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Kosch TA, Torres-Sánchez M, Liedtke HC, Summers K, Yun MH, Crawford AJ, Maddock ST, Ahammed MS, Araújo VLN, Bertola LV, Bucciarelli G, Carné A, Carneiro CM, Chan KO, Chen Y, Crottini A, da Silva JM, Denton RD, Dittrich C, Themudo GE, Farquharson KA, Forsdick NJ, Gilbert E, Jing C, Katzenback BA, Kotharambath R, Levis NA, Márquez R, Mazepa G, Mulder KP, Müller H, O’Connell MJ, Orozco-terWengel P, Palomar G, Petzold A, Pfennig DW, Pfennig KS, Reichert MS, Robert J, Scherz MD, Siu-Ting K, Snead AA, Stöck M, Stuckert AMM, Stynoski JL, Tarvin RD, Valero KCW. The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.06.27.601086. [PMID: 39005434 PMCID: PMC11244923 DOI: 10.1101/2024.06.27.601086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
Amphibians represent a diverse group of tetrapods, marked by deep divergence times between their three systematic orders and families. Studying amphibian biology through the genomics lens increases our understanding of the features of this animal class and that of other terrestrial vertebrates. The need for amphibian genomics resources is more urgent than ever due to the increasing threats to this group. Amphibians are one of the most imperiled taxonomic groups, with approximately 41% of species threatened with extinction due to habitat loss, changes in land use patterns, disease, climate change, and their synergistic effects. Amphibian genomics resources have provided a better understanding of ontogenetic diversity, tissue regeneration, diverse life history and reproductive modes, antipredator strategies, and resilience and adaptive responses. They also serve as critical models for understanding widespread genomic characteristics, including evolutionary genome expansions and contractions given they have the largest range in genome sizes of any animal taxon and multiple mechanisms of genetic sex determination. Despite these features, genome sequencing of amphibians has significantly lagged behind that of other vertebrates, primarily due to the challenges of assembling their large, repeat-rich genomes and the relative lack of societal support. The advent of long-read sequencing technologies, along with computational techniques that enhance scaffolding capabilities and streamline computational workload is now enabling the ability to overcome some of these challenges. To promote and accelerate the production and use of amphibian genomics research through international coordination and collaboration, we launched the Amphibian Genomics Consortium (AGC) in early 2023. This burgeoning community already has more than 282 members from 41 countries (6 in Africa, 131 in the Americas, 27 in Asia, 29 in Australasia, and 89 in Europe). The AGC aims to leverage the diverse capabilities of its members to advance genomic resources for amphibians and bridge the implementation gap between biologists, bioinformaticians, and conservation practitioners. Here we evaluate the state of the field of amphibian genomics, highlight previous studies, present challenges to overcome, and outline how the AGC can enable amphibian genomics research to "leap" to the next level.
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Affiliation(s)
- Tiffany A. Kosch
- One Health Research Group, Melbourne Veterinary School, Faculty of Science, University of Melbourne, Werribee, Victoria, Australia
| | - María Torres-Sánchez
- Department of Biodiversity, Ecology, and Evolution, Complutense University of Madrid, 28040 Madrid, Spain
| | | | - Kyle Summers
- Biology Department, East Carolina University, Greenville, NC, USA 27858
| | - Maximina H. Yun
- Technische Universität Dresden, CRTD/Center for Regenerative Therapies Dresden, Dresden, Germany
- Max Planck Institute for Molecular Cell Biology and Genetics, Dresden, Germany
| | - Andrew J. Crawford
- Department of Biological Sciences, Universidad de los Andes, Bogotá, 111711, Colombia
- Museo de Historia Natural C.J. Marinkelle, Universidad de los Andes, Bogotá, 111711, Colombia
| | - Simon T. Maddock
- School of Natural and Environmental Sciences, Newcastle University, UK
- Island Biodiversity and Conservation Centre, University of Seychelles, Seychelles
| | | | - Victor L. N. Araújo
- Department of Biological Sciences, Universidad de los Andes, Bogotá, 111711, Colombia
| | - Lorenzo V. Bertola
- Centre for Tropical Bioinformatics and Molecular Biology, James Cook University, QLD 4810, Australia
| | - Gary Bucciarelli
- Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, USA
| | - Albert Carné
- Museo Nacional de Ciencias Naturales-CSIC, Madrid, Spain
| | - Céline M. Carneiro
- Department of Integrative Biology, The University of Texas at Austin, Austin, TX, USA
| | - Kin O. Chan
- University of Kansas Biodiversity Institute and Natural History Museum, Lawrence, Kansas 66045, USA
| | - Ying Chen
- Biology Department, Queen’s University, Ontario, Canada
| | - Angelica Crottini
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, 4485-661 Vairão, Portugal
- Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, rua do Campo Alegre s/n, 4169– 007 Porto, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, 4485-661 Vairão, Portugal
| | - Jessica M. da Silva
- Evolutionary Genomics and Wildlife Management, Foundatonal Biodiversity Science, Kirstenbosch Research Centre, South African National Biodiversity Institute, Newlands 7735, Cape Town, South Africa
- Centre for Evolutionary Genomics and Wildlife Conservation, Department of Zoology, University of Johannesburg, Auckland Park 2006, Johannesburg, South Africa
| | - Robert D. Denton
- Department of Biology, Marian University, Indianapolis, IN 46222, USA
| | - Carolin Dittrich
- Rojas Lab, Konrad-Lorenz-Institute of Ethology, Department of Life Science, University of Veterinary Medicine, Vienna, Austria
| | - Gonçalo Espregueira Themudo
- CIIMAR Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos, Portugal
| | - Katherine A. Farquharson
- School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, New South Wales, Australia
| | | | - Edward Gilbert
- School of Natural Sciences, The University of Hull, Hull, HU6 7RX, United Kingdom
- Energy and Environment Institute, The University of Hull, Hull, HU6 7RX, United Kingdom
| | - Che Jing
- Key Laboratory of Genetic Evolution and Animal Models, and Yunnan Key Laboratory of Biodiversity and Ecological Conservation of Gaoligong Mountain, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China
- Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences, Yezin, Nay Pyi Taw 05282, Myanmar
| | | | - Ramachandran Kotharambath
- Herpetology Lab, Dept. of Zoology, Central University of Kerala, Tejaswini Hills, Kasaragod, Kerala, 671320, India
| | - Nicholas A. Levis
- Department of Biology, Indiana University, Bloomington, IN 47405, USA
| | - Roberto Márquez
- Department of Biological Sciences, Virginia Tech. Blacksburg, VA 24060, USA
| | - Glib Mazepa
- Department of Ecology and Evolution, University of Lausanne, Biophore, 1015, Switzerland
- Department of Ecology and Genetics, Evolutionary Biology, Norbyvägen 18D, 75236 Uppsala, Sweden
| | - Kevin P. Mulder
- Wildlife Health Ghent, Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium
| | - Hendrik Müller
- Central Natural Science Collections, Martin Luther University Halle-Wittenberg, D-06108 Halle (Saale), Germany
| | - Mary J. O’Connell
- School of Life Sciences, Faculty of Medicine and Health Sciences, University of Nottingham, UK
| | - Pablo Orozco-terWengel
- School of Biosciences, Cardiff University, Museum Avenue, CF10 3AX Cardiff, United Kingdom
| | - Gemma Palomar
- Department of Genetics, Physiology, and Microbiology; Faculty of Biological Sciences; Complutense University of Madrid, Madrid, Spain
- Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Kraków, Poland
| | - Alice Petzold
- Institute of Biochemistry and Biology, University of Potsdam, Karl-Liebknecht Str.24-25, 14476 Potsdam, Germany
| | - David W. Pfennig
- Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA
| | - Karin S. Pfennig
- Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA
| | - Michael S. Reichert
- Department of Integrative Biology, Oklahoma State University, Stillwater OK, USA
| | - Jacques Robert
- Department of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, 14642, USA
| | - Mark D. Scherz
- Natural History Museum of Denmark, University of Copenhagen, Universitetsparken 15, 2100, Copenhagen Ø, Denmark
| | - Karen Siu-Ting
- School of Biological Sciences, Queen’s University Belfast, Belfast, BT7 1NN, Northern Ireland, United Kingdom
- Instituto Peruano de Herpetología, Ca. Augusto Salazar Bondy 136, Surco, Lima, Peru
- Herpetology Lab, The Natural History Museum, London, United Kingdom
| | - Anthony A Snead
- Department of Biology, New York University, New York, NY, USA
| | - Matthias Stöck
- Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Müggelseedamm 301, D-12587 Berlin, Germany
| | - Adam M. M. Stuckert
- Department of Biology and Biochemistry, University of Houston, Houston, Texas, 77204, USA
| | | | - Rebecca D. Tarvin
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA 94720, USA
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Sánchez Herrera M, Forero D, Calor AR, Romero GQ, Riyaz M, Callisto M, de Oliveira Roque F, Elme-Tumpay A, Khan MK, Justino de Faria AP, Pires MM, Silva de Azevêdo CA, Juen L, Zakka U, Samaila AE, Hussaini S, Kemabonta K, Guillermo-Ferreira R, Ríos-Touma B, Maharaj G. Systematic challenges and opportunities in insect monitoring: a Global South perspective. Philos Trans R Soc Lond B Biol Sci 2024; 379:20230102. [PMID: 38705182 PMCID: PMC11070269 DOI: 10.1098/rstb.2023.0102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2023] [Accepted: 03/21/2024] [Indexed: 05/07/2024] Open
Abstract
Insect monitoring is pivotal for assessing biodiversity and informing conservation strategies. This study delves into the complex realm of insect monitoring in the Global South-world developing and least-developed countries as identified by the United Nations Conference on Trade and Development-highlighting challenges and proposing strategic solutions. An analysis of publications from 1990 to 2024 reveals an imbalance in research contributions between the Global North and South, highlighting disparities in entomological research and the scarcity of taxonomic expertise in the Global South. We discuss the socio-economic factors that exacerbate the issues, including funding disparities, challenges in collaboration, infrastructure deficits, information technology obstacles and the impact of local currency devaluation. In addition, we emphasize the crucial role of environmental factors in shaping insect diversity, particularly in tropical regions facing multiple challenges including climate change, urbanization, pollution and various anthropogenic activities. We also stress the need for entomologists to advocate for ecosystem services provided by insects in addressing environmental issues. To enhance monitoring capacity, we propose strategies such as community engagement, outreach programmes and cultural activities to instill biodiversity appreciation. Further, language inclusivity and social media use are emphasized for effective communication. More collaborations with Global North counterparts, particularly in areas of molecular biology and remote sensing, are suggested for technological advancements. In conclusion, advocating for these strategies-global collaborations, a diverse entomological community and the integration of transverse disciplines-aims to address challenges and foster inclusive, sustainable insect monitoring in the Global South, contributing significantly to biodiversity conservation and overall ecosystem health. This article is part of the theme issue 'Towards a toolkit for global insect biodiversity monitoring'.
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Affiliation(s)
- Melissa Sánchez Herrera
- Department of Museum Research and Collections, University of Alabama Museums, Tuscaloosa, AL 35487, USA
- Division of Invertebrate Zoology, American Museum of Natural History, New York, NY 10024, USA
- Laboratorio de Zoología y Ecología Acuática (LAZOEA), Biological Sciences Department, Universidad de los Andes, Bogotá, 111711, Colombia
| | - Dimitri Forero
- Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogotá, 11132, Colombia
| | - Adolfo Ricardo Calor
- Instituto de Biologia, Laboratório de Entomologia Aquática, Universidade Federal da Bahia, Salvador, 40000-000, Brazil
| | - Gustavo Q. Romero
- Laboratório de Interações Multitróficas e Biodiversidade, Departamento de Biologia Animal, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), CP 6109, Campinas-SP, CEP 13083-970, Brazil
| | - Muzafar Riyaz
- St Xavier's College, Palayamkottai, Tirunelveli, Tamil Nadu, CEP: 40170-115 7 – 627002, India
| | - Marcos Callisto
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Genética, Ecologia e Evolução, Pampulha, Belo Horizonte - MG, 31270-901, Brazil
| | - Fabio de Oliveira Roque
- Departamento de Biología, Universidade Federal de Mato Grosso do Sul, Ciudade Universitaria, Pioneiros, Campo Grande, MS, 79070-900, Brazil
- Centre for Tropical Environmental and Sustainability Science and College of Science and Engineering, James Cook University, Douglas, Cairns, 4811, Queensland, Australia
| | - Araseli Elme-Tumpay
- Laboratorio de Biodiversidad y Genética Ambiental (BioGeA), Universidad Nacional de Avellaneda, Mario Bravo 1460, CP1870 Piñeyro, Avellaneda, Buenos Aires, Argentina
- Colección Entomológica, Universidad Nacional de San Antonio Abad del Cusco, Gabinete C-338, Pabellón C, Ciudad Universitaria de Perayoc, Cusco, 08003, Peru
| | - M. Kawsar Khan
- Department of Biology, Chemistry and Pharmacy, Freie Universität Berlin, Berlin, 14195, Germany
| | - Ana Paula Justino de Faria
- Instituto de Ciências Biológicas, Universidade Estadual do Piauí, Rua João Cabral - Matinha, Teresina - PI, 64018-030, Brazil
| | - Mateus Marques Pires
- Laboratory of Ecology and Conservation of Aquatic Ecosystems, Universidade do Vale do Taquari - UNIVATES, Lajeado, RS, 95914-014 Brazil
| | - Carlos Augusto Silva de Azevêdo
- Departamento de Biología, Universidade Estadual do Maranhão, Programa em Biodiversidade, Ambiente e Saúde, 65.055-310, Brazil
| | - Leandro Juen
- Instituto de Ciências Biológicas, Universidade Federal do Pará, UFPA, Belém - PA, 66077-830, Brazil
| | - Usman Zakka
- Department of Crop & Soil Science, University of Port Harcourt, Port Harcourt 500272, Nigeria
| | - Akeweta Emmanuel Samaila
- Department of Agronomy, Federal University of Kashere: Kashere, P.M.B. 0182, Gombe State, Nigeria
| | - Suwaiba Hussaini
- Department of Biological Sciences, Abubakar Tafawa Balewa University, Bauchi, 740272, Nigeria
| | - Kehinde Kemabonta
- Department of Zoology, University of Lagos: Akoka, Lagos, 100213, Nigeria
| | - Rhainer Guillermo-Ferreira
- Centro de Pesquisas em Entomologia e Biologia Experimental, Universidade Federal do Triangulo Mineiro (UFTM), Uberaba - MG, 38061-500, Brazil
| | - Blanca Ríos-Touma
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud (BIOMAS), Universidad de Las Américas, Campus UDLAPARK, Quito, Ecuador 170513
| | - Gyanpriya Maharaj
- University of Guyana, Centre for the Study of Biological Diversity, Georgetown, Guyana
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3
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Perry LR, Kelble RL, Brewer VN, Christensen CE, Kerstens ME, Owens TM, Sampognaro MA, Zahor DL, Zitomer RA, Austin SH, Cornelius JM, Dinkins JB, Frey SJK, Frisinger CE, LeQuier SM, Lundblad CG, Oskowski J, Perlman HR, Price WJ, Rich R, Ruth KA, Schroeder VM, Szabo SB, Rivers JW. Ten simple rules for implementing a successful field season. PLoS Comput Biol 2024; 20:e1012189. [PMID: 38900760 PMCID: PMC11189235 DOI: 10.1371/journal.pcbi.1012189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/22/2024] Open
Affiliation(s)
- Lindsey R. Perry
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Rebecca L. Kelble
- Department of Fisheries, Wildlife, and Conservation Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Valerie N. Brewer
- Department of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America
| | - Cara E. Christensen
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Mark E. Kerstens
- Department of Forest Engineering, Resources, and Management, Oregon State University, Corvallis, Oregon, United States of America
| | - Terrah M. Owens
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Megan A. Sampognaro
- Department of Forest Engineering, Resources, and Management, Oregon State University, Corvallis, Oregon, United States of America
| | - Dorothy L. Zahor
- Department of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America
| | - Rachel A. Zitomer
- Department of Forest Ecosystems & Society, Oregon State University, Corvallis, Oregon, United States of America
| | - Suzanne H. Austin
- Department of Fisheries, Wildlife, and Conservation Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Jamie M. Cornelius
- Department of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America
| | - Jonathan B. Dinkins
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Sarah J. K. Frey
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Cecelia E. Frisinger
- Department of Forest Engineering, Resources, and Management, Oregon State University, Corvallis, Oregon, United States of America
| | - Stephanie M. LeQuier
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Carl G. Lundblad
- Department of Fisheries, Wildlife, and Conservation Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Jamie Oskowski
- Department of Fisheries, Wildlife, and Conservation Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Hallie R. Perlman
- Department of Integrative Biology, Oregon State University, Corvallis, Oregon, United States of America
| | - William J. Price
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Richard Rich
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Kayla A. Ruth
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Vanessa M. Schroeder
- Department of Animal and Rangeland Sciences, Oregon State University and Eastern Oregon Agricultural Research Center-Burns, Burns, Oregon, United States of America
| | - Shawn B. Szabo
- Department of Animal and Rangeland Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - James W. Rivers
- Department of Forest Engineering, Resources, and Management, Oregon State University, Corvallis, Oregon, United States of America
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Savage AM, Willmott MJ, Moreno‐García P, Jagiello Z, Li D, Malesis A, Miles LS, Román‐Palacios C, Salazar‐Valenzuela D, Verrelli BC, Winchell KM, Alberti M, Bonilla‐Bedoya S, Carlen E, Falvey C, Johnson L, Martin E, Kuzyo H, Marzluff J, Munshi‐South J, Phifer‐Rixey M, Stadnicki I, Szulkin M, Zhou Y, Gotanda KM. Online toolkits for collaborative and inclusive global research in urban evolutionary ecology. Ecol Evol 2024; 14:e11633. [PMID: 38919647 PMCID: PMC11197044 DOI: 10.1002/ece3.11633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 06/05/2024] [Accepted: 06/12/2024] [Indexed: 06/27/2024] Open
Abstract
Urban evolutionary ecology is inherently interdisciplinary. Moreover, it is a field with global significance. However, bringing researchers and resources together across fields and countries is challenging. Therefore, an online collaborative research hub, where common methods and best practices are shared among scientists from diverse geographic, ethnic, and career backgrounds would make research focused on urban evolutionary ecology more inclusive. Here, we describe a freely available online research hub for toolkits that facilitate global research in urban evolutionary ecology. We provide rationales and descriptions of toolkits for: (1) decolonizing urban evolutionary ecology; (2) identifying and fostering international collaborative partnerships; (3) common methods and freely-available datasets for trait mapping across cities; (4) common methods and freely-available datasets for cross-city evolutionary ecology experiments; and (5) best practices and freely available resources for public outreach and communication of research findings in urban evolutionary ecology. We outline how the toolkits can be accessed, archived, and modified over time in order to sustain long-term global research that will advance our understanding of urban evolutionary ecology.
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Affiliation(s)
- Amy M. Savage
- Department of Biology & Center for Computational and Integrative BiologyRutgers University – CamdenCamdenNew JerseyUSA
| | - Meredith J. Willmott
- Department of Biology & Center for Computational and Integrative BiologyRutgers University – CamdenCamdenNew JerseyUSA
| | - Pablo Moreno‐García
- Department of Biological Sciences, Center for Computation & TechnologyLouisiana State UniversityBaton RougeLouisianaUSA
| | - Zuzanna Jagiello
- Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research CentreUniversity of WarsawWarsawPoland
| | - Daijiang Li
- Department of Biological Sciences, Center for Computation & TechnologyLouisiana State UniversityBaton RougeLouisianaUSA
| | - Anna Malesis
- Department of Urban Design and PlanningUniversity of WashingtonSeattleWashingtonUSA
| | - Lindsay S. Miles
- Virginia Polytechnic and State UniversityEntomology DepartmentBlacksburgVirginiaUSA
| | | | - David Salazar‐Valenzuela
- Centro de Investigación de la Biodiversidad y Cambio Climático & Facultad de Ciencias de Medio AmbienteUniversidad IndoaméricaQuitoEcuador
| | - Brian C. Verrelli
- Center for Biological Data ScienceVirginia Commonwealth UniversityRichmondVirginiaUSA
| | | | - Marina Alberti
- Department of Urban Design and PlanningUniversity of WashingtonSeattleWashingtonUSA
| | | | - Elizabeth Carlen
- Department of BiologyWashington University of St. LouisSt. LouisMissouriUSA
| | - Cleo Falvey
- Department of Biology & Center for Computational and Integrative BiologyRutgers University – CamdenCamdenNew JerseyUSA
| | - Lauren Johnson
- Department of BiologyWashington University of St. LouisSt. LouisMissouriUSA
| | - Ella Martin
- Ecology and Evolutionary BiologyUniversity of TorontoTorontoOntarioCanada
| | - Hanna Kuzyo
- Frankfurt Zoological SocietyFrankfurtGermany
| | - John Marzluff
- Department of Urban Design and PlanningUniversity of WashingtonSeattleWashingtonUSA
| | - Jason Munshi‐South
- Louis Calder Center & Department of Biological SciencesFordham UniversityArmonkNew YorkUSA
| | | | - Ignacy Stadnicki
- Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research CentreUniversity of WarsawWarsawPoland
| | - Marta Szulkin
- Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research CentreUniversity of WarsawWarsawPoland
| | - Yuyu Zhou
- Department of Geological and Atmospheric SciencesIowa State UniversityAmesIowaUSA
| | - Kiyoko M. Gotanda
- Department of Biological SciencesBrock UniversitySt. CatharinesOntarioCanada
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Forero D, Castro-Huertas V, Morales-Devia H, Barão KR, Bianchi FM, Campos LA, Dellapé PM, Melo MC, Schwertner CF. Heteroptera research in Latin America and the Caribbean (Insecta, Hemiptera): status and perspectives in the 21st century. AN ACAD BRAS CIENC 2024; 96:e20230218. [PMID: 38808812 DOI: 10.1590/0001-3765202420230218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Accepted: 06/11/2023] [Indexed: 05/30/2024] Open
Abstract
Latin American and the Caribbean regions (LAC) harbor one of the most biodiverse areas of the world, the Neotropics. True bugs (Hemiptera: Heteroptera) are a diverse lineage of insects, with more than 45,000 species, particularly speciose in the Neotropical region. True bugs are fundamental in the dynamics of natural and modified ecosystems, with several species critical to agriculture and public health. We compiled Heteroptera research in LAC from 1998-2022 using bibliographic databases. Productivity, collaborative networks, and the main topics studied were analyzed. A total of 1,651 Heteroptera studies from LAC were found, with continuous growth being 2021 the most prolific. Four categories (Taxonomy of extant species, Faunistic inventories and new records, Pest species biology, and Community ecology) represent most of the published research. About 60 percent of the records evaluated correspond to five families (Pentatomidae, Reduviidae, Coreidae, Miridae, and Rhyparochromidae). We emphasize the need to keep working on Heteroptera taxonomy because it will allow further advances in other areas such as phylogenetic analyses, biogeography, ecology, and natural history, among others. The results of our analyses characterize the current state of heteropterology in the region, establishing a baseline for future studies and efforts to broaden the knowledge of the group.
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Affiliation(s)
- Dimitri Forero
- Universidad Nacional de Colombia, Instituto de Ciencias Naturales, Carrera 30 No. 45-03, Bogotá, Colombia
| | - Valentina Castro-Huertas
- UNLP, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) División Entomología, Museo de La Plata, Paseo del Bosque, s/n, B1900FWA, La Plata, Buenos Aires, Argentina
| | - Hernán Morales-Devia
- Pontificia Universidad Javeriana, Biblioteca General Alfonso Borrero Cabal, S.J., Carrera 7 No. 40-62, Bogotá, Colombia
| | - Kim R Barão
- Universidade Federal de Alagoas, Laboratório de Sistemática e Diversidade de Artrópodes, Unidade Educacional Penedo, Campus Arapiraca, Avenida Beira Rio, s/n, 57200-000 Penedo, AL, Brazil
| | - Filipe Michels Bianchi
- Universidade Federal do Rio Grande do Sul, Laboratório de Entomologia Sistemática, Departamento de Zoologia, Av. Bento Gonçalves 9500, 91501-970 Porto Alegre, RS, Brazil
| | - Luiz Alexandre Campos
- Universidade Federal do Rio Grande do Sul, Laboratório de Entomologia Sistemática, Departamento de Zoologia, Av. Bento Gonçalves 9500, 91501-970 Porto Alegre, RS, Brazil
| | - Pablo M Dellapé
- UNLP, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) División Entomología, Museo de La Plata, Paseo del Bosque, s/n, B1900FWA, La Plata, Buenos Aires, Argentina
| | - María Cecilia Melo
- UNLP, Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) División Entomología, Museo de La Plata, Paseo del Bosque, s/n, B1900FWA, La Plata, Buenos Aires, Argentina
| | - Cristiano F Schwertner
- Universidade Federal de São Paulo, Departamento de Ecologia e Biologia Evolutiva, Rua do Matão, nº 277, Cidade Universitária, 05508-090 São Paulo, SP, Brazil
- Universidade de São Paulo, Museu de Zoologia, Avenida Nazaré, 481, Ipiranga, 04263-000 São Paulo, SP, Brazil
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Meneses CG, Pitogo KME, Supsup CE, Brown RM. Philippine herpetology (Amphibia, Reptilia), 20 years on: two decades of progress towards an increasingly collaborative, equitable, and inclusive approach to the study of the archipelago's amphibians and reptiles. Zookeys 2024; 1190:213-257. [PMID: 38327266 PMCID: PMC10848817 DOI: 10.3897/zookeys.1190.109586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2023] [Accepted: 01/04/2024] [Indexed: 02/09/2024] Open
Abstract
A first review of the history, status, and prospects for Philippine herpetology conducted more than two decades ago (2002) summarized the diverse topics studied and highlighted the development and achievements in research up to the year 2000. This study revisits and re-assesses what Philippine herpetology has accomplished, both as a discipline and a community, during the last two decades (2002-2022). A total of 423 herpetological publications was collated, revealing a substantial increase in annual publications, rising from approximately four per year during 2002-2008 to around 28 per year in 2009-2022. Half of the published studies focused on squamate reptiles (lizards 30.5%, snakes 21%) and 28.4% on amphibians, 5.9% on turtles, and 2.6% on crocodiles. The remaining 11.6% of studies focused simultaneously on multiple taxa (i.e., faunal inventories). Diversity and distribution (35.2%) and ecological (26.5%) studies remained popular, while studies on taxonomy (14.9%), phylogenetics and biogeography (11.8%), and conservation (11.6%) all increased. However, geographical gaps persist urging immediate surveys in many understudied regions of the country. Finally, we found a balanced representation between Filipino and foreign first authors (1.0:1.1), yet a substantial gender gap exists between male and female first authors (7.1:1.0). Nonetheless, the steep increase in publications and the diversity of people engaged in Philippine herpetology is a remarkable positive finding compared to the 20 years preceding the last review (1980-2000). Our hope is that the next decades will bring increasingly equitable, internationally collaborative, and broadly inclusive engagement in the study of amphibians and reptiles in the Philippines.
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Affiliation(s)
- Camila G. Meneses
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, Kansas 66045, USAUniversity of KansasLawrenceUnited States of America
| | - Kier Mitchel E. Pitogo
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, Kansas 66045, USAUniversity of KansasLawrenceUnited States of America
| | - Christian E. Supsup
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, Kansas 66045, USAUniversity of KansasLawrenceUnited States of America
| | - Rafe M. Brown
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, Kansas 66045, USAUniversity of KansasLawrenceUnited States of America
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Copete JC, Kik A, Novotny V, Cámara-Leret R. The importance of Indigenous and local people for cataloging biodiversity. Trends Ecol Evol 2023; 38:1112-1114. [PMID: 37723016 DOI: 10.1016/j.tree.2023.08.017] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 08/29/2023] [Accepted: 08/30/2023] [Indexed: 09/20/2023]
Abstract
Indigenous and local peoples' (ILPs) role in cataloging life on Earth has been significant but underappreciated. ILPs knowledge faces growing cultural and biological threats. Greater participation by ILPs in research would make science more efficient, conservation more sustainable, and traditional knowledge stronger, but formidable obstacles remain.
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Affiliation(s)
- Juan C Copete
- Department of Systematic and Evolutionary Botany, Zollikerstrasse 107, 8008 Zurich, Switzerland.
| | - Alfred Kik
- University of South Bohemia, Branisovska 31a, Ceske Budejovice, Czech Republic; Biology Centre, Institute of Entomology, Czech Academy of Sciences, Branisovska 31, Ceske Budejovice, Czech Republic; New Guinea Binatang Research Center, Madang, Papua New Guinea
| | - Vojtech Novotny
- University of South Bohemia, Branisovska 31a, Ceske Budejovice, Czech Republic; Biology Centre, Institute of Entomology, Czech Academy of Sciences, Branisovska 31, Ceske Budejovice, Czech Republic; New Guinea Binatang Research Center, Madang, Papua New Guinea
| | - Rodrigo Cámara-Leret
- Department of Systematic and Evolutionary Botany, Zollikerstrasse 107, 8008 Zurich, Switzerland.
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Salomon AK, Okamoto DK, Wilson ḴBJ, Tommy Happynook H, Mack WA, Allan Davidson SH, Guujaaw G, L Humchitt WWH, Happynook TM, Cox WC, Gillette HF, Christiansen NS, Dragon D, Kobluk HM, Lee LC, Tinker MT, Silver JJ, Armitage D, McKechnie I, MacNeil A, Hillis D, Muhl EK, Gregr EJ, Commander CJC, Augustine A. Disrupting and diversifying the values, voices and governance principles that shape biodiversity science and management. Philos Trans R Soc Lond B Biol Sci 2023; 378:20220196. [PMID: 37246378 DOI: 10.1098/rstb.2022.0196] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2022] [Accepted: 03/01/2023] [Indexed: 05/30/2023] Open
Abstract
With climate, biodiversity and inequity crises squarely upon us, never has there been a more pressing time to rethink how we conceptualize, understand and manage our relationship with Earth's biodiversity. Here, we describe governance principles of 17 Indigenous Nations from the Northwest Coast of North America used to understand and steward relationships among all components of nature, including humans. We then chart the colonial origins of biodiversity science and use the complex case of sea otter recovery to illuminate how ancestral governance principles can be mobilized to characterize, manage and restore biodiversity in more inclusive, integrative and equitable ways. To enhance environmental sustainability, resilience and social justice amid today's crises, we need to broaden who benefits from and participates in the sciences of biodiversity by expanding the values and methodologies that shape such initiatives. In practice, biodiversity conservation and natural resource management need to shift from centralized, siloed approaches to those that can accommodate plurality in values, objectives, governance systems, legal traditions and ways of knowing. In doing so, developing solutions to our planetary crises becomes a shared responsibility. This article is part of the theme issue 'Detecting and attributing the causes of biodiversity change: needs, gaps and solutions'.
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Affiliation(s)
- Anne K Salomon
- School of Resource and Environmental Management, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, Canada V5A 1S6
| | - Daniel K Okamoto
- Department of Biological Science, Florida State University, 319 Stadium Drive, Tallahassee, FL 32303, USA
| | | | - Hiininaasim Tommy Happynook
- Department of Anthropology, University of Victoria, PO Box 1700 STN CSC, Victoria, British Columbia, Canada V8W 2Y2
| | | | | | - Gidansda Guujaaw
- Haida Nation, Skidegate, Haida Gwaii, British Columbia, Canada V0T 1S1
| | | | | | | | | | | | - Dianna Dragon
- Che:k:tles7et'h' Nation, Kyuquot, British Columbia, Canada VOP 1J0
| | - Hannah M Kobluk
- School of Resource and Environmental Management, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia, Canada V5A 1S6
| | - Lynn C Lee
- Gwaii Haanas National Park Reserve, National Marine Conservation Area Reserve, and Haida Heritage Site, 60 Second Beach Road, Skidegate, British Columbia, Canada V0T 1S1
| | - M Tim Tinker
- Nhydra Ecological Consulting, 11 Parklea Drive, Head of St Margarets Bay, Nova Scotia, Canada B3Z 2G6
| | - Jennifer J Silver
- Geography, Environment and Geomatics, University of Guelph, 50 Stone Road East, Guelph, Ontario, Canada N1G 2W1
| | - Derek Armitage
- School of Environment, Resources and Sustainability, University of Waterloo, 200 University Ave W, Waterloo, Ontario, Canada N2L 3G1
| | - Iain McKechnie
- Department of Anthropology, University of Victoria, PO Box 1700 STN CSC, Victoria, British Columbia, Canada V8W 2Y2
| | - Aaron MacNeil
- Ocean Frontier Institute, Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4R2
- Department of Mathematics and Statistics, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4R2
| | - Dylan Hillis
- Department of Anthropology, University of Victoria, PO Box 1700 STN CSC, Victoria, British Columbia, Canada V8W 2Y2
| | - Ella-Kari Muhl
- School of Environment, Resources and Sustainability, University of Waterloo, 200 University Ave W, Waterloo, Ontario, Canada N2L 3G1
| | - Edward J Gregr
- Institute for Resources Environment, and Sustainability, University of British Columbia, 2202 Main Mall, Vancouver, British Columbia, Canada V6T 1Z4
- Scitech Environmental Consulting 2136 Napier St., Vancouver, British Columbia, Canada V5L 2N9
| | - Christian J C Commander
- Department of Biological Science, Florida State University, 319 Stadium Drive, Tallahassee, FL 32303, USA
| | - Arianna Augustine
- Stz'uminus Nation, 1041-B Trunk Rd, Duncan, British Columbia, Canada V9L 2S4
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Ocampo-Ariza C, Toledo-Hernández M, Librán-Embid F, Armenteras D, Vansynghel J, Raveloaritiana E, Arimond I, Angulo-Rubiano A, Tscharntke T, Ramírez-Castañeda V, Wurz A, Marcacci G, Anders M, Urbina-Cardona JN, de Vos A, Devy S, Westphal C, Toomey A, Sheherazade, Chirango Y, Maas B. Global South leadership towards inclusive tropical ecology and conservation. Perspect Ecol Conserv 2023. [DOI: 10.1016/j.pecon.2023.01.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
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