1
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Yakovlev AG, Taisova AS. Downhill excitation energy flow in reaction centers of purple bacteria Rhodospirillum rubrum G9. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2024; 1865:149499. [PMID: 39069149 DOI: 10.1016/j.bbabio.2024.149499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Revised: 07/24/2024] [Accepted: 07/24/2024] [Indexed: 07/30/2024]
Abstract
Using femtosecond differential spectroscopy, excitation energy transfer in reaction centers (RCs) of the carotenoidless strain of purple bacteria Rhodospirillum rubrum G9 was studied at room temperature. Excitation and probing of the Qy, Qx and Soret absorption bands of the RCs were carried out by pulses with duration of 25-30 fs. Modeling of ΔA (light - dark) kinetics made it possible to estimate the characteristic time of various stages of excitation energy transformation. It is shown that the dynamics of the downhill energy flow in the RCs is determined both by the internal energy conversion Soret→ Qx → Qy in each cofactor and by the energy transfer H* → B* → P* (H - bacteriopheophytin, B - bacteriochlorophyll a, P - bacteriochlorophyll a dimer) between cofactors. The transfer of energy between the upper excited levels (Soret and Qx) of the cofactors accelerates its arrival to the lower exciton level of the P, from where charge separation begins. It turned out that all conversion and energy transfer processes occur within 40-160 fs: the conversion Soret → Qx occurs in 40-50 fs, the conversion Qx → Qy occurs in 100-140 fs, the transfer H* → B* has a time constant of 80-120 fs, and the transfer B* → P* has a time constant of 130-160 fs. The rate of energy transfer between the upper excited levels is close to the rate of transfer between Qy levels.
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Affiliation(s)
- Andrei G Yakovlev
- Lomonosov Moscow State University, Belozersky Institute of Physico-Chemical Biology, Leninskie Gory, 119991 Moscow, Russian Federation.
| | - Alexandra S Taisova
- Lomonosov Moscow State University, Belozersky Institute of Physico-Chemical Biology, Leninskie Gory, 119991 Moscow, Russian Federation
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2
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Faries KM, Hanson DK, Buhrmaster JC, Hippleheuser S, Tira GA, Wyllie RM, Kohout CE, Magdaong NCM, Holten D, Laible PD, Kirmaier C. Two pathways to understanding electron transfer in reaction centers from photosynthetic bacteria: A comparison of Rhodobacter sphaeroides and Rhodobacter capsulatus mutants. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2024; 1865:149047. [PMID: 38692451 DOI: 10.1016/j.bbabio.2024.149047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 04/23/2024] [Accepted: 04/24/2024] [Indexed: 05/03/2024]
Abstract
The rates, yields, mechanisms and directionality of electron transfer (ET) are explored in twelve pairs of Rhodobacter (R.) sphaeroides and R. capsulatus mutant RCs designed to defeat ET from the excited primary donor (P*) to the A-side cofactors and re-direct ET to the normally inactive mirror-image B-side cofactors. In general, the R. sphaeroides variants have larger P+HB- yields (up to ∼90%) than their R. capsulatus analogs (up to ∼60%), where HB is the B-side bacteriopheophytin. Substitution of Tyr for Phe at L-polypeptide position L181 near BB primarily increases the contribution of fast P* → P+BB- → P+HB- two-step ET, where BB is the "bridging" B-side bacteriochlorophyll. The second step (∼6-8 ps) is slower than the first (∼3-4 ps), unlike A-side two-step ET (P* → P+BA- → P+HA-) where the second step (∼1 ps) is faster than the first (∼3-4 ps) in the native RC. Substitutions near HB, at L185 (Leu, Trp or Arg) and at M-polypeptide site M133/131 (Thr, Val or Glu), strongly affect the contribution of slower (20-50 ps) P* → P+HB- one-step superexchange ET. Both ET mechanisms are effective in directing electrons "the wrong way" to HB and both compete with internal conversion of P* to the ground state (∼200 ps) and ET to the A-side cofactors. Collectively, the work demonstrates cooperative amino-acid control of rates, yields and mechanisms of ET in bacterial RCs and how A- vs. B-side charge separation can be tuned in both species.
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Affiliation(s)
- Kaitlyn M Faries
- Department of Chemistry, Washington University, St. Louis, MO 63130, United States of America
| | - Deborah K Hanson
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439, United States of America
| | - James C Buhrmaster
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439, United States of America
| | - Stephen Hippleheuser
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439, United States of America
| | - Gregory A Tira
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439, United States of America
| | - Ryan M Wyllie
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439, United States of America
| | - Claire E Kohout
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439, United States of America
| | - Nikki Cecil M Magdaong
- Department of Chemistry, Washington University, St. Louis, MO 63130, United States of America
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, MO 63130, United States of America
| | - Philip D Laible
- Biosciences Division, Argonne National Laboratory, Lemont, IL 60439, United States of America
| | - Christine Kirmaier
- Department of Chemistry, Washington University, St. Louis, MO 63130, United States of America.
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3
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Begam K, Aksu H, Dunietz BD. Antioxidative Triplet Excitation Energy Transfer in Bacterial Reaction Center Using a Screened Range Separated Hybrid Functional. J Phys Chem B 2024. [PMID: 38687467 DOI: 10.1021/acs.jpcb.3c08501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2024]
Abstract
Excess energy absorbed by photosystems (PSs) can result in photoinduced oxidative damage. Transfer of such energy within the core pigments of the reaction center in the form of triplet excitation is important in regulating and preserving the functionality of PSs. In the bacterial reaction center (BRC), the special pair (P) is understood to act as the electron donor in a photoinduced charge transfer process, triggering the charge separation process through the photoactive branch A pigments that experience a higher polarizing environment. At this work, triplet excitation energy transfer (TEET) in BRC is studied using a computational perspective to gain insights into the roles of the dielectric environment and interpigment orientations. We find in agreement with experimental observations that TEET proceeds through branch B. The TEET process toward branch B pigment is found to be significantly faster than the hypothetical process proceeding through branch A pigments with ps and ms time scales, respectively. Our calculations find that conformational differences play a major role in this branch asymmetry in TEET, where the dielectric environment asymmetry plays only a secondary role in directing the TEET to proceed through branch B. We also address TEET processes asserting the role of carotenoid as the final triplet energy acceptor and in a mutant form, where the branch pigments adjacent to P are replaced by bacteriopheophytins. The necessary electronic excitation energies and electronic state couplings are calculated by the recently developed polarization-consistent framework combining a screened range-separated hybrid functional and a polarizable continuum mode. The polarization-consistent potential energy surfaces are used to parametrize the quantum mechanical approach, implementing Fermi's golden rule expression of the TEET rate calculations.
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Affiliation(s)
- Khadiza Begam
- Department of Physics, Kent State University, Kent, Ohio 44242, United States
| | - Huseyin Aksu
- Department of Physics, Faculty of Science at Canakkale Onsekiz Mart University, Canakkale 17100, Turkey
| | - Barry D Dunietz
- Department of Chemistry and Biochemistry, Kent State University, Kent, Ohio 44242, United States
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4
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Bin T, Venturoli G, Ghelli AM, Francia F. Use of bacterial photosynthetic vesicles to evaluate the effect of ionic liquids on the permeability of biological membranes. BIOCHIMICA ET BIOPHYSICA ACTA. BIOMEMBRANES 2024; 1866:184291. [PMID: 38296218 DOI: 10.1016/j.bbamem.2024.184291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 01/22/2024] [Accepted: 01/24/2024] [Indexed: 02/09/2024]
Abstract
Ionic liquids (ILs) are salts composed of a combination of organic or inorganic cations and anions characterized by a low melting point, often below 100 °C. This property, together with an extremely low vapor pressure, low flammability and high thermal stability, makes them suitable for replacing canonical organic solvents, with a reduction of industrial activities impact on the environment. Although in the last decades the eco-compatibility of ILs has been extensively verified through toxicological tests performed on model organisms, a detailed understanding of the interaction of these compounds with biological membranes is far from being exhaustive. In this context, we have chosen to evaluate the effect of some ILs on native membranes by using chromatophores, photosynthetic vesicles that can be isolated from Rhodobacter capsulatus, a member of the purple non‑sulfur bacteria. Here, carotenoids associated with the light-harvesting complex II, act as endogenous spectral probes of the transmembrane electrical potential (ΔΨ). By measuring through time-resolved absorption spectroscopy the evolution of the carotenoid band shift induced by a single excitation of the photosynthetic reaction center, information on the ΔΨ dissipation due to ionic currents across the membrane can be obtained. We found that some ILs cause a rather fast dissipation of the transmembrane ΔΨ even at low concentrations, and that this behavior is dose-dependent. By using two different models to analyze the decay of the carotenoid signals, we attempted to interpret at a mechanistic level the marked increase of ionic permeability caused by specific ILs.
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Affiliation(s)
- Tancredi Bin
- Department of Pharmacy and Biotechnology, University of Bologna, Via Irnerio 42, 40126 Bologna, Italy
| | - Giovanni Venturoli
- Department of Pharmacy and Biotechnology, University of Bologna, Via Irnerio 42, 40126 Bologna, Italy; Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia (CNISM), c/o Dipartimento di Fisica e Astronomia (DIFA), via Irnerio 46, Università di Bologna, I-40126 Bologna, Italy
| | - Anna Maria Ghelli
- Department of Pharmacy and Biotechnology, University of Bologna, Via Irnerio 42, 40126 Bologna, Italy
| | - Francesco Francia
- Department of Pharmacy and Biotechnology, University of Bologna, Via Irnerio 42, 40126 Bologna, Italy.
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5
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Tani K, Kanno R, Ji XC, Satoh I, Kobayashi Y, Hall M, Yu LJ, Kimura Y, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY. Rhodobacter capsulatus forms a compact crescent-shaped LH1-RC photocomplex. Nat Commun 2023; 14:846. [PMID: 36792596 PMCID: PMC9932092 DOI: 10.1038/s41467-023-36460-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2022] [Accepted: 02/01/2023] [Indexed: 02/17/2023] Open
Abstract
Rhodobacter (Rba.) capsulatus has been a favored model for studies of all aspects of bacterial photosynthesis. This purple phototroph contains PufX, a polypeptide crucial for dimerization of the light-harvesting 1-reaction center (LH1-RC) complex, but lacks protein-U, a U-shaped polypeptide in the LH1-RC of its close relative Rba. sphaeroides. Here we present a cryo-EM structure of the Rba. capsulatus LH1-RC purified by DEAE chromatography. The crescent-shaped LH1-RC exhibits a compact structure containing only 10 LH1 αβ-subunits. Four αβ-subunits corresponding to those adjacent to protein-U in Rba. sphaeroides were absent. PufX in Rba. capsulatus exhibits a unique conformation in its N-terminus that self-associates with amino acids in its own transmembrane domain and interacts with nearby polypeptides, preventing it from interacting with proteins in other complexes and forming dimeric structures. These features are discussed in relation to the minimal requirements for the formation of LH1-RC monomers and dimers, the spectroscopic behavior of both the LH1 and RC, and the bioenergetics of energy transfer from LH1 to the RC.
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Affiliation(s)
- Kazutoshi Tani
- Graduate School of Medicine, Mie University, Tsu, Japan.
| | - Ryo Kanno
- Scientific Imaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-Son, Kunigami-Gun, Okinawa, Japan.,Quantum wave microscopy unit, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-Son, Kunigami-Gun, Okinawa, Japan
| | | | | | | | - Malgorzata Hall
- Scientific Imaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-Son, Kunigami-Gun, Okinawa, Japan
| | - Long-Jiang Yu
- Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Yukihiro Kimura
- Department of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, Japan
| | | | - Bruno M Humbel
- Scientific Imaging Section, Research Support Division, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1, Tancha, Onna-Son, Kunigami-Gun, Okinawa, Japan.,Department of Cell Biology and Neuroscience, Juntendo University, Graduate School of Medicine, Tokyo, Japan
| | - Michael T Madigan
- School of Biological Sciences, Department of Microbiology, Southern Illinois University, Carbondale, IL, USA
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6
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Fufina TY, Selikhanov GK, Gabdulkhakov AG, Vasilieva LG. Properties and Crystal Structure of the Cereibacter sphaeroides Photosynthetic Reaction Center with Double Amino Acid Substitution I(L177)H + F(M197)H. MEMBRANES 2023; 13:157. [PMID: 36837660 PMCID: PMC9964780 DOI: 10.3390/membranes13020157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 01/19/2023] [Accepted: 01/21/2023] [Indexed: 06/18/2023]
Abstract
The photosynthetic reaction center of the purple bacterium Cereibacter sphaeroides with two site-directed mutations Ile-L177-His and M197 Phe-His is of double interest. The substitution I(L177)H results in strong binding of a bacteriochlorophyll molecule with L-subunit. The second mutation F(M197)H introduces a new H-bond between the C2-acetyl carbonyl group of the bacteriochlorophyll PB and His-M197, which is known to enhance the stability of the complex. Due to this H-bond, π -electron system of P finds itself connected to an extensive H-bonding network on the periplasmic surface of the complex. The crystal structure of the double mutant reaction center obtained with 2.6 Å resolution allows clarifying consequences of the Ile L177 - His substitution. The value of the P/P+ midpoint potential in the double mutant RC was found to be ~20 mV less than the sum of potentials measured in the two RCs with single mutations I(L177)H and F(M197)H. The protein environment of the BChls PA and BB were found to be similar to that in the RC with single substitution I(L177)H, whereas an altered pattern of the H-bonding networks was found in the vicinity of bacteriochlorophyll PB. The data obtained are consistent with our previous assumption on a correlation between the bulk of the H-bonding network connected with the π-electron system of the primary electron donor P and the value of its oxidation potential.
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Affiliation(s)
- Tatiana Yu. Fufina
- Federal Research Center Pushchino Scientific Center for Biological Research PSCBR, Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya Street 2, 142290 Pushchino, Russia
| | - Georgii K. Selikhanov
- Federal Research Center Pushchino Scientific Center for Biological Research PSCBR, Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya Street 2, 142290 Pushchino, Russia
- Institute of Protein Research, Russian Academy of Sciences, Institutskaya Street 4, 142290 Pushchino, Russia
| | - Azat G. Gabdulkhakov
- Institute of Protein Research, Russian Academy of Sciences, Institutskaya Street 4, 142290 Pushchino, Russia
| | - Lyudmila G. Vasilieva
- Federal Research Center Pushchino Scientific Center for Biological Research PSCBR, Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya Street 2, 142290 Pushchino, Russia
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7
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Selikhanov G, Atamas A, Yukhimchuk D, Fufina T, Vasilieva L, Gabdulkhakov A. Stabilization of Cereibacter sphaeroides Photosynthetic Reaction Center by the Introduction of Disulfide Bonds. MEMBRANES 2023; 13:154. [PMID: 36837657 PMCID: PMC9967408 DOI: 10.3390/membranes13020154] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 01/19/2023] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
The photosynthetic reaction center of the purple nonsulfur bacterium Cereibacter sphaeroides is a useful model for the study of mechanisms of photoinduced electron transfer and a promising component for photo-bio-electrocatalytic systems. The basic research and technological applications of this membrane pigment-protein complex require effective approaches to increase its structural stability. In this work, a rational design approach to genetically modify the reaction centers by introducing disulfide bonds is used. This resulted in significantly increasing the thermal stability of some of the mutant pigment-protein complexes. The formation of the S-S bonds was confirmed by X-ray crystallography as well as SDS-PAGE, and the optical properties of the reaction centers were studied. The genetically modified reaction centers presented here preserved their ability for photochemical charge separation and could be of interest for basic science and biotechnology.
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Affiliation(s)
- Georgii Selikhanov
- Institute of Protein Research, Russian Academy of Sciences, Institutskaya 4, 142290 Pushchino, Moscow Region, Russia
- Federal Research Center Pushchino Scientific Center for Biological Research PSCBR, Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya 2, 142290 Pushchino, Moscow Region, Russia
| | - Anastasia Atamas
- Institute of Protein Research, Russian Academy of Sciences, Institutskaya 4, 142290 Pushchino, Moscow Region, Russia
| | - Diana Yukhimchuk
- Institute of Protein Research, Russian Academy of Sciences, Institutskaya 4, 142290 Pushchino, Moscow Region, Russia
| | - Tatiana Fufina
- Federal Research Center Pushchino Scientific Center for Biological Research PSCBR, Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya 2, 142290 Pushchino, Moscow Region, Russia
| | - Lyudmila Vasilieva
- Federal Research Center Pushchino Scientific Center for Biological Research PSCBR, Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya 2, 142290 Pushchino, Moscow Region, Russia
| | - Azat Gabdulkhakov
- Institute of Protein Research, Russian Academy of Sciences, Institutskaya 4, 142290 Pushchino, Moscow Region, Russia
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8
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Samaei A, Deshmukh SS, Protheroe C, Nyéki S, Tremblay-Ethier RA, Kálmán L. Photoactivation and conformational gating for manganese binding and oxidation in bacterial reaction centers. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2023; 1864:148928. [PMID: 36216075 DOI: 10.1016/j.bbabio.2022.148928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 09/26/2022] [Accepted: 10/03/2022] [Indexed: 11/05/2022]
Abstract
The influence of illumination history of native bacterial reaction centers (BRCs) on the ability of binding and photo-induced oxidation of manganous ions was investigated in the pH range between 8.0 and 9.4. Binding of manganous ions to a buried site required 6 to 11-fold longer incubation periods, depending on the pH, in dark-adapted BRCs than in BRCs that were previously illuminated prior to manganese binding. The intrinsic electron transfer from the bound manganese ion to the photo-oxidized primary electron donor was found to be limited by a 2 to 5-fold slower precursor conformational step in the dark-adapted samples for the same pH range. The conformational gating could be eliminated by photoactivation, namely if the BRCs were illuminated prior to binding. Unlike in Photosystem II, photoactivation in BRCs did not involve cluster assembly. Photoactivation with manganese already bound was only possible at elevated detergent concentration. In addition, also exclusively in dark-adapted BRCs, a marked breaking point in the Arrhenius-plot was discovered around 15 °C at pH 9.4 indicating a change in the reaction mechanism, most likely caused by the change of orientation of the 2-acetyl group of the inactive bacteriochlorophyll monomer located near the manganese binding site.
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Affiliation(s)
- Ali Samaei
- Department of Physics, Concordia University, Montreal, QC, Canada
| | | | | | - Sarah Nyéki
- Department of Physics, Concordia University, Montreal, QC, Canada
| | | | - László Kálmán
- Department of Physics, Concordia University, Montreal, QC, Canada.
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9
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Magdaong NCM, Faries KM, Buhrmaster JC, Tira GA, Wyllie RM, Kohout CE, Hanson DK, Laible PD, Holten D, Kirmaier C. High Yield of B-Side Electron Transfer at 77 K in the Photosynthetic Reaction Center Protein from Rhodobacter sphaeroides. J Phys Chem B 2022; 126:8940-8956. [PMID: 36315401 DOI: 10.1021/acs.jpcb.2c05905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The primary electron transfer (ET) processes at 295 and 77 K are compared for the Rhodobacter sphaeroides reaction center (RC) pigment-protein complex from 13 mutants including a wild-type control. The engineered RCs bear mutations in the L and M polypeptides that largely inhibit ET from the excited state P* of the primary electron donor (P, a bacteriochlorophyll dimer) to the normally photoactive A-side cofactors and enhance ET to the C2-symmetry related, and normally photoinactive, B-side cofactors. P* decay is multiexponential at both temperatures and modeled as arising from subpopulations that differ in contributions of two-step ET (e.g., P* → P+BB- → P+HB-), one-step superexchange ET (e.g., P* → P+HB-), and P* → ground state. [HB and BB are monomeric bacteriopheophytin and bacteriochlorophyll, respectively.] The relative abundances of the subpopulations and the inherent rate constants of the P* decay routes vary with temperature. Regardless, ET to produce P+HB- is generally faster at 77 K than at 295 K by about a factor of 2. A key finding is that the yield of P+HB-, which ranges from ∼5% to ∼90% among the mutant RCs, is essentially the same at 77 K as at 295 K in each case. Overall, the results show that ET from P* to the B-side cofactors in these mutants does not require thermal activation and involves combinations of ET mechanisms analogous to those operative on the A side in the native RC.
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Affiliation(s)
- Nikki Cecil M Magdaong
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Kaitlyn M Faries
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - James C Buhrmaster
- Biosciences Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Gregory A Tira
- Biosciences Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Ryan M Wyllie
- Biosciences Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Claire E Kohout
- Biosciences Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Deborah K Hanson
- Biosciences Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Philip D Laible
- Biosciences Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Christine Kirmaier
- Department of Chemistry, Washington University, St. Louis, Missouri 63130, United States
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10
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Roy A, Diers JR, Niedzwiedzki DM, Meares A, Yu Z, Bhagavathy GV, Satraitis A, Kirmaier C, Ptaszek M, Bocian DF, Holten D. Photophysical Properties and Electronic Structure of Hydroporphyrin Dyads Exhibiting Strong Through-Space and Through-Bond Electronic Interactions. J Phys Chem A 2022; 126:5107-5125. [PMID: 35901315 DOI: 10.1021/acs.jpca.2c03114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Electronic interactions between tetrapyrroles are utilized in natural photosynthetic systems to tune the light-harvesting and energy-/charge-transfer processes in these assemblies. Such interactions also can be employed to tailor the electronic properties of tetrapyrrolic dyads and larger arrays for use in materials science and biomedical research. Here, we have utilized static and time-resolved optical spectroscopy to characterize the optical absorption and emission properties of a set of chlorin and bacteriochlorin dyads with varying degrees of through-bond (TB) and through-space (TS) interactions between the constituent macrocycles. The dyads consist of two chlorins or two bacteriochlorins joined by a linker that utilizes a triple-double-triple-bond (enediyne) motif in which the double-bond portion is an ester-substituted ethylene or o-phenylene unit. The photophysical studies are coupled with density functional theory (DFT) calculations to probe the ground-state molecular orbital (MO) characteristics of the dyads and time-dependent DFT calculations (TDDFT) to elucidate excited-state properties. The latter include electronic characteristics of the singlet excited-state manifold and the absorption transitions to these states from the electronic ground state. A comparison of the MO and calculated spectral properties of each dyad with the linker present versus disrupted (by eliminating the double-bond portion) gives insight into the relative contributions of TB versus TS interactions to the electronic properties of the dyads. The results show that the TB and TS contributions are additive (constructively interfere), which is not always the case for molecular dyads. Most of the dyads have shorter lifetimes of the lowest singlet excited state compared to the parent monomer, which derives from increased S1 → S0 internal conversion. The enhancement is greater for the dyads in benzonitrile than in toluene. The studies provide insights into the nature of the electronic interactions between the constituents in the tetrapyrrole arrays and how these interactions dictate the spectral properties and excited-state decay characteristics.
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Affiliation(s)
- Arpita Roy
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, United States
| | - James R Diers
- Department of Chemistry, University of California, Riverside, California 92521-0403, United States
| | - Dariusz M Niedzwiedzki
- Center for Solar Energy and Energy Storage, and Department of Energy, Environmental & Chemical Engineering, Washington University, St. Louis, Missouri 63130-4889, United States
| | - Adam Meares
- Department of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore County, 1000 Hilltop Circle, Baltimore, Maryland 21250-0001, United States
| | - Zhanqian Yu
- Department of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore County, 1000 Hilltop Circle, Baltimore, Maryland 21250-0001, United States
| | - Ganga Viswanathan Bhagavathy
- Department of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore County, 1000 Hilltop Circle, Baltimore, Maryland 21250-0001, United States
| | - Andrius Satraitis
- Department of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore County, 1000 Hilltop Circle, Baltimore, Maryland 21250-0001, United States
| | - Christine Kirmaier
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, United States
| | - Marcin Ptaszek
- Department of Chemistry and Biochemistry, University of Maryland, Baltimore County, Baltimore County, 1000 Hilltop Circle, Baltimore, Maryland 21250-0001, United States
| | - David F Bocian
- Department of Chemistry, University of California, Riverside, California 92521-0403, United States
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, Missouri 63130-4889, United States
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11
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Selikhanov G, Fufina T, Guenther S, Meents A, Gabdulkhakov A, Vasilieva L. X-ray structure of the Rhodobacter sphaeroides reaction center with an M197 Phe→His substitution clarifies the properties of the mutant complex. IUCRJ 2022; 9:261-271. [PMID: 35371503 PMCID: PMC8895020 DOI: 10.1107/s2052252521013178] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 12/11/2021] [Indexed: 06/14/2023]
Abstract
The first steps of the global process of photosynthesis take place in specialized membrane pigment-protein complexes called photosynthetic reaction centers (RCs). The RC of the photosynthetic purple bacterium Rhodobacter sphaeroides, a relatively simple analog of the more complexly organized photosystem II in plants, algae and cyanobacteria, serves as a convenient model for studying pigment-protein interactions that affect photochemical processes. In bacterial RCs the bacteriochlorophyll (BChl) dimer P serves as the primary electron donor, and its redox potential is a critical factor in the efficient functioning of the RC. It has previously been shown that the replacement of Phe M197 by His strongly affects the oxidation potential of P (E m P/P+), increasing its value by 125 mV, as well as increasing the thermal stability of RC and its stability in response to external pressure. The crystal structures of F(M197)H RC at high resolution obtained using various techniques presented in this report clarify the optical and electrochemical properties of the primary electron donor and the increased resistance of the mutant complex to denaturation. The electron-density maps are consistent with the donation of a hydrogen bond from the imidazole group of His M197 to the C2-acetyl carbonyl group of BChl PB. The formation of this hydrogen bond leads to a considerable out-of-plane rotation of the acetyl carbonyl group and results in a 1.2 Å shift of the O atom of this group relative to the wild-type structure. Besides, the distance between BChl PA and PB in the area of pyrrole ring I was found to be increased by up to 0.17 Å. These structural changes are discussed in association with the spectral properties of BChl dimer P. The electron-density maps strongly suggest that the imidazole group of His M197 accepts another hydrogen bond from the nearest water molecule, which in turn appears to form two more hydrogen bonds to Asn M195 and Asp L155. As a result of the F(M197)H mutation, BChl PB finds itself connected to the extensive hydrogen-bonding network that pre-existed in wild-type RC. Dissimilarities in the two hydrogen-bonding networks near the M197 and L168 sites may account for the different changes of the E m P/P+ in F(M197)H and H(L168)F RCs. The involvement of His M197 in the hydrogen-bonding network also appears to be related to stabilization of the F(M197)H RC structure. Analysis of the experimental data presented here and of the data available in the literature points to the fact that the hydrogen-bonding networks in the vicinity of BChl dimer P may play an important role in fine-tuning the redox properties of the primary electron donor.
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Affiliation(s)
- Georgii Selikhanov
- Group of Structural Studies of Macromolecular Complexes, Institute of Protein Research, Russian Academy of Sciences, Institutskaya 4, Pushchino 142290, Moscow Region, Russian Federation
- Federal Research Center Pushchino Scientific Center for Biological Research PSCBR, Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya 2, Pushchino 142290, Moscow Region, Russian Federation
| | - Tatiana Fufina
- Federal Research Center Pushchino Scientific Center for Biological Research PSCBR, Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya 2, Pushchino 142290, Moscow Region, Russian Federation
| | - Sebastian Guenther
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - Alke Meents
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - Azat Gabdulkhakov
- Group of Structural Studies of Macromolecular Complexes, Institute of Protein Research, Russian Academy of Sciences, Institutskaya 4, Pushchino 142290, Moscow Region, Russian Federation
| | - Lyudmila Vasilieva
- Federal Research Center Pushchino Scientific Center for Biological Research PSCBR, Institute of Basic Biological Problems, Russian Academy of Sciences, Institutskaya 2, Pushchino 142290, Moscow Region, Russian Federation
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12
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Wang C, O'Hagan MP, Willner B, Willner I. Bioinspired Artificial Photosynthetic Systems. Chemistry 2021; 28:e202103595. [PMID: 34854505 DOI: 10.1002/chem.202103595] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Indexed: 12/18/2022]
Abstract
Mimicking photosynthesis using artificial systems, as a means for solar energy conversion and green fuel generation, is one of the holy grails of modern science. This perspective presents recent advances towards developing artificial photosynthetic systems. In one approach, native photosystems are interfaced with electrodes to yield photobioelectrochemical cells that transform light energy into electrical power. This is exemplified by interfacing photosystem I (PSI) and photosystem II (PSII) as an electrically contacted assembly mimicking the native Z-scheme, and by the assembly of an electrically wired PSI/glucose oxidase biocatalytic conjugate on an electrode support. Illumination of the functionalized electrodes led to light-induced generation of electrical power, or to the generation of photocurrents using glucose as the fuel. The second approach introduces supramolecular photosensitizer nucleic acid/electron acceptor complexes as functional modules for effective photoinduced electron transfer stimulating the subsequent biocatalyzed generation of NADPH or the Pt-nanoparticle-catalyzed evolution of molecular hydrogen. Application of the DNA machineries for scaling-up the photosystems is demonstrated. A third approach presents the integration of artificial photosynthetic modules into dynamic nucleic acid networks undergoing reversible reconfiguration or dissipative transient operation in the presence of auxiliary triggers. Control over photoinduced electron transfer reactions and photosynthetic transformations by means of the dynamic networks is demonstrated.
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Affiliation(s)
- Chen Wang
- Institute of Chemistry, The Minerva Centre for Bio-Hybrid Complex Systems, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Michael P O'Hagan
- Institute of Chemistry, The Minerva Centre for Bio-Hybrid Complex Systems, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Bilha Willner
- Institute of Chemistry, The Minerva Centre for Bio-Hybrid Complex Systems, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Itamar Willner
- Institute of Chemistry, The Minerva Centre for Bio-Hybrid Complex Systems, The Hebrew University of Jerusalem, Jerusalem, Israel
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13
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A previously unrecognized membrane protein in the Rhodobacter sphaeroides LH1-RC photocomplex. Nat Commun 2021; 12:6300. [PMID: 34728609 PMCID: PMC8564508 DOI: 10.1038/s41467-021-26561-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 10/01/2021] [Indexed: 11/27/2022] Open
Abstract
Rhodobacter (Rba.) sphaeroides is the most widely used model organism in bacterial photosynthesis. The light-harvesting-reaction center (LH1-RC) core complex of this purple phototroph is characterized by the co-existence of monomeric and dimeric forms, the presence of the protein PufX, and approximately two carotenoids per LH1 αβ-polypeptides. Despite many efforts, structures of the Rba. sphaeroides LH1-RC have not been obtained at high resolutions. Here we report a cryo-EM structure of the monomeric LH1-RC from Rba. sphaeroides strain IL106 at 2.9 Å resolution. The LH1 complex forms a C-shaped structure composed of 14 αβ-polypeptides around the RC with a large ring opening. From the cryo-EM density map, a previously unrecognized integral membrane protein, referred to as protein-U, was identified. Protein-U has a U-shaped conformation near the LH1-ring opening and was annotated as a hypothetical protein in the Rba. sphaeroides genome. Deletion of protein-U resulted in a mutant strain that expressed a much-reduced amount of the dimeric LH1-RC, indicating an important role for protein-U in dimerization of the LH1-RC complex. PufX was located opposite protein-U on the LH1-ring opening, and both its position and conformation differed from that of previous reports of dimeric LH1-RC structures obtained at low-resolution. Twenty-six molecules of the carotenoid spheroidene arranged in two distinct configurations were resolved in the Rba. sphaeroides LH1 and were positioned within the complex to block its channels. Our findings offer an exciting new view of the core photocomplex of Rba. sphaeroides and the connections between structure and function in bacterial photocomplexes in general. Rhodobacter (Rba.) sphaeroides is a model organism for studying bacterial photosynthesis. Here, the authors present the 2.9 Å cryo-EM structure of the monomeric light-harvesting-reaction center core complex from Rba. sphaeroides strain IL106, which revealed the position and conformation of PufX and the presence of an additional component protein-U, an integral membrane protein.
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14
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Dubas K, Szewczyk S, Białek R, Burdziński G, Jones MR, Gibasiewicz K. Antagonistic Effects of Point Mutations on Charge Recombination and a New View of Primary Charge Separation in Photosynthetic Proteins. J Phys Chem B 2021; 125:8742-8756. [PMID: 34328746 PMCID: PMC8389993 DOI: 10.1021/acs.jpcb.1c03978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
Light-induced electron-transfer
reactions were investigated in
wild-type and three mutant Rhodobacter sphaeroides reaction centers with the secondary electron acceptor (ubiquinone
QA) either removed or permanently reduced. Under such conditions,
charge separation between the primary electron donor (bacteriochlorophyll
dimer, P) and the electron acceptor (bacteriopheophytin, HA) was followed by P+HA– →
PHA charge recombination. Two reaction centers were used
that had different single amino-acid mutations that brought about
either a 3-fold acceleration in charge recombination compared to that
in the wild-type protein, or a 3-fold deceleration. In a third mutant
in which the two single amino-acid mutations were combined, charge
recombination was similar to that in the wild type. In all cases,
data from transient absorption measurements were analyzed using similar
models. The modeling included the energetic relaxation of the charge-separated
states caused by protein dynamics and evidenced the appearance of
an intermediate charge-separated state, P+BA–, with BA being the bacteriochlorophyll
located between P and HA. In all cases, mixing of the states
P+BA– and P+HA– was observed and explained in terms of
electron delocalization over BA and HA. This
delocalization, together with picosecond protein relaxation, underlies
a new view of primary charge separation in photosynthesis.
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Affiliation(s)
- K Dubas
- Faculty of Physics, Adam Mickiewicz University, ul. Uniwersytetu Poznanskiego 2, 61-614 Poznań, Poland.,Department of Optometry, Poznan University of Medical Sciences, ul. Rokietnicka 5d, 60-806 Poznań, Poland
| | - S Szewczyk
- Faculty of Physics, Adam Mickiewicz University, ul. Uniwersytetu Poznanskiego 2, 61-614 Poznań, Poland
| | - R Białek
- Faculty of Physics, Adam Mickiewicz University, ul. Uniwersytetu Poznanskiego 2, 61-614 Poznań, Poland
| | - G Burdziński
- Faculty of Physics, Adam Mickiewicz University, ul. Uniwersytetu Poznanskiego 2, 61-614 Poznań, Poland
| | - M R Jones
- School of Biochemistry, Medical Sciences Building, University of Bristol, University Walk, Bristol, BS8 1TD, U.K
| | - K Gibasiewicz
- Faculty of Physics, Adam Mickiewicz University, ul. Uniwersytetu Poznanskiego 2, 61-614 Poznań, Poland
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15
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Fufina TY, Vasilieva LG. Effect of Detergents and Osmolytes on Thermal Stability of Native and Mutant Rhodobacter sphaeroides Reaction Centers. BIOCHEMISTRY (MOSCOW) 2021; 86:517-524. [PMID: 33941072 DOI: 10.1134/s000629792104012x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Photosynthetic reaction center (RC) of the purple bacterium Rhodobacter sphaeroides is one of the most well-studied transmembrane pigment-protein complexes. It is a relatively stable protein with established conditions for its isolation from membranes, purification, and storage. However, it has been shown that some amino acid substitutions can affect stability of the RC, which results in a decrease of the RCs yield during its isolation and purification, disturbs spectral properties of the RCs during storage, and can lead to sample heterogeneity. To optimize conditions for studying mutant RCs, the effect of various detergents and osmolytes on thermal stability of the complex was examined. It was shown that trehalose and, to a lesser extent, sucrose, maltose, and hydroxyectoin at 1 M concentration slow down thermal denaturation of RCs. Sodium cholate was found to have significant stabilizing effect on the structure of native and genetically modified RCs. The use of sodium cholate as a detergent has several advantages and can be recommended for the storage and investigation of the unstable mutant membrane complexes of purple bacteria in long-term experiments.
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Affiliation(s)
- Tatiana Yu Fufina
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia.
| | - Lyudmila G Vasilieva
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia
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16
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Gibasiewicz K, Pajzderska M, Białek R, Jones MR. Temperature dependence of nanosecond charge recombination in mutant Rhodobacter sphaeroides reaction centers: modelling of the protein dynamics. Photochem Photobiol Sci 2021; 20:913-922. [PMID: 34213754 DOI: 10.1007/s43630-021-00069-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 06/18/2021] [Indexed: 10/20/2022]
Abstract
We investigated the influence of a range of factors-temperature, redox midpoint potential of an electron carrier, and protein dynamics-on nanosecond electron transfer within a protein. The model reaction was back electron transfer from a bacteriopheophytin anion, HA-, to an oxidized primary electron donor, P+, in a wild type Rhodobacter sphaeroides reaction center (RC) with a permanently reduced secondary electron acceptor (quinone, QA-). Also used were two modified RCs with single amino acid mutations near the monomeric bacteriochlorophyll, BA, located between P and HA. Both mutant RCs showed significant slowing down of this back electron transfer reaction with decreasing temperature, similar to that observed with the wild type RC, but contrasting with a number of single point mutant RCs studied previously. The observed similarities and differences are explained in the framework of a (P+BA- ↔ P+HA-) equilibrium model with an important role played by protein relaxation. The major cause of the observed temperature dependence, both in the wild type RC and in the mutant proteins, is a limitation in access to the thermally activated pathway of charge recombination via the state P+BA- at low temperatures. The data indicate that in all RCs both charge recombination pathways, the thermally activated one and a direct one without involvement of the P+BA- state, are controlled by the protein dynamics. It is concluded that the modifications of the protein environment affect the overall back electron transfer kinetics primarily by changing the redox potential of BA and not by changing the protein relaxation dynamics.
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Affiliation(s)
- Krzysztof Gibasiewicz
- Faculty of Physics, Adam Mickiewicz University, ul. Uniwersytetu Poznańskiego 2, 61-614, Poznań, Poland.
| | - Maria Pajzderska
- Faculty of Physics, Adam Mickiewicz University, ul. Uniwersytetu Poznańskiego 2, 61-614, Poznań, Poland
| | - Rafał Białek
- Faculty of Physics, Adam Mickiewicz University, ul. Uniwersytetu Poznańskiego 2, 61-614, Poznań, Poland
| | - Michael R Jones
- School of Biochemistry, University of Bristol, Medical Sciences BuildingUniversity Walk, Bristol, BS8 1TD, UK
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17
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Sharma VK, Mahammed A, Mizrahi A, Morales M, Fridman N, Gray HB, Gross Z. Dimeric Corrole Analogs of Chlorophyll Special Pairs. J Am Chem Soc 2021; 143:9450-9460. [PMID: 34014656 PMCID: PMC8249354 DOI: 10.1021/jacs.1c02362] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Chlorophyll special pairs in photosynthetic reaction centers function as both exciton acceptors and primary electron donors. Although the macrocyclic natural pigments contain Mg(II), the central metal in most synthetic analogs is Zn(II). Here we report that insertion of either Al(III) or Ga(III) into an imidazole-substituted corrole affords an exceptionally robust photoactive dimer. Notably, attractive electronic interactions between dimer subunits are relatively strong, as documented by signature changes in NMR and electronic absorption spectra, as well as by cyclic voltammetry, where two well-separated reversible redox couples were observed. EPR spectra of one-electron oxidized dimers closely mimic those of native special pairs, and strong through-space interactions between corrole subunits inferred from spectroscopic and electrochemical data are further supported by crystal structure analyses (3 Å interplanar distances, 5 Å lateral shifts, and 6 Å metal to metal distances).
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Affiliation(s)
- Vinay K. Sharma
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa 32000, Israel
| | - Atif Mahammed
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa 32000, Israel
| | - Amir Mizrahi
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa 32000, Israel
- Department of Chemistry, Nuclear Research Center Negev, Beer Sheva, 9001, Israel
| | - Maryann Morales
- Beckman Institute, California Institute of Technology, Pasadena, California 91125, United States
| | - Natalia Fridman
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa 32000, Israel
| | - Harry B. Gray
- Beckman Institute, California Institute of Technology, Pasadena, California 91125, United States
| | - Zeev Gross
- Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa 32000, Israel
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18
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Kimura Y, Yamashita T, Seto R, Imanishi M, Honda M, Nakagawa S, Saga Y, Takenaka S, Yu LJ, Madigan MT, Wang-Otomo ZY. Circular dichroism and resonance Raman spectroscopies of bacteriochlorophyll b-containing LH1-RC complexes. PHOTOSYNTHESIS RESEARCH 2021; 148:77-86. [PMID: 33834357 DOI: 10.1007/s11120-021-00831-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 03/19/2021] [Indexed: 06/12/2023]
Abstract
The core light-harvesting complexes (LH1) in bacteriochlorophyll (BChl) b-containing purple phototrophic bacteria are characterized by a near-infrared absorption maximum around 1010 nm. The determinative cause for this ultra-redshift remains unclear. Here, we present results of circular dichroism (CD) and resonance Raman measurements on the purified LH1 complexes in a reaction center-associated form from a mesophilic and a thermophilic Blastochloris species. Both the LH1 complexes displayed purely positive CD signals for their Qy transitions, in contrast to those of BChl a-containing LH1 complexes. This may reflect differences in the conjugation system of the bacteriochlorin between BChl b and BChl a and/or the differences in the pigment organization between the BChl b- and BChl a-containing LH1 complexes. Resonance Raman spectroscopy revealed remarkably large redshifts of the Raman bands for the BChl b C3-acetyl group, indicating unusually strong hydrogen bonds formed with LH1 polypeptides, results that were verified by a published structure. A linear correlation was found between the redshift of the Raman band for the BChl C3-acetyl group and the change in LH1-Qy transition for all native BChl a- and BChl b-containing LH1 complexes examined. The strong hydrogen bonding and π-π interactions between BChl b and nearby aromatic residues in the LH1 polypeptides, along with the CD results, provide crucial insights into the spectral and structural origins for the ultra-redshift of the long-wavelength absorption maximum of BChl b-containing phototrophs.
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Affiliation(s)
- Y Kimura
- Department of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, 657-8501, Japan.
| | - T Yamashita
- Faculty of Science, Ibaraki University, Mito, 310-8512, Japan
| | - R Seto
- Department of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, 657-8501, Japan
| | - M Imanishi
- Department of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, 657-8501, Japan
| | - M Honda
- Faculty of Science, Ibaraki University, Mito, 310-8512, Japan
| | - S Nakagawa
- Department of Chemistry, Kindai University, Higashi-Osaka, 577-8502, Japan
| | - Y Saga
- Department of Chemistry, Kindai University, Higashi-Osaka, 577-8502, Japan
| | - S Takenaka
- Department of Agrobioscience, Graduate School of Agriculture, Kobe University, Nada, Kobe, 657-8501, Japan
| | - L-J Yu
- Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - M T Madigan
- Department of Microbiology, Southern Illinois University, Carbondale, IL, 62901, USA
| | - Z-Y Wang-Otomo
- Faculty of Science, Ibaraki University, Mito, 310-8512, Japan.
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19
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Białek R, Thakur K, Ruff A, Jones MR, Schuhmann W, Ramanan C, Gibasiewicz K. Insight into Electron Transfer from a Redox Polymer to a Photoactive Protein. J Phys Chem B 2020; 124:11123-11132. [PMID: 33236901 PMCID: PMC7735723 DOI: 10.1021/acs.jpcb.0c08714] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Revised: 11/10/2020] [Indexed: 11/29/2022]
Abstract
Biohybrid photoelectrochemical systems in photovoltaic or biosensor applications have gained considerable attention in recent years. While the photoactive proteins engaged in such systems usually maintain an internal charge separation quantum yield of nearly 100%, the subsequent steps of electron and hole transfer beyond the protein often limit the overall system efficiency and their kinetics remain largely uncharacterized. To reveal the dynamics of one of such charge-transfer reactions, we report on the reduction of Rhodobacter sphaeroides reaction centers (RCs) by Os-complex-modified redox polymers (P-Os) characterized using transient absorption spectroscopy. RCs and P-Os were mixed in buffered solution in different molar ratios in the presence of a water-soluble quinone as an electron acceptor. Electron transfer from P-Os to the photoexcited RCs could be described by a three-exponential function, the fastest lifetime of which was on the order of a few microseconds, which is a few orders of magnitude faster than the internal charge recombination of RCs with fully separated charge. This was similar to the lifetime for the reduction of RCs by their natural electron donor, cytochrome c2. The rate of electron donation increased with increasing ratio of polymer to protein concentrations. It is proposed that P-Os and RCs engage in electrostatic interactions to form complexes, the sizes of which depend on the polymer-to-protein ratio. Our findings throw light on the processes within hydrogel-based biophotovoltaic devices and will inform the future design of materials optimally suited for this application.
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Affiliation(s)
- Rafał Białek
- Faculty
of Physics, Adam Mickiewicz University, Poznań, ul. Uniwersytetu
Poznańskiego 2, 61-614 Poznań, Poland
| | - Kalyani Thakur
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Adrian Ruff
- Analytical
Chemistry—Center for Electrochemical Sciences, Faculty of Biochemistry
and Chemistry, Faculty of Biochemistry and Chemistry, Ruhr-University Bochum, Universitätsstrasse 150, D-44780 Bochum, Germany
| | - Michael R. Jones
- School
of Biochemistry, Biomedical Sciences Building, University of Bristol, University Walk, Bristol BS8 1TD, U.K.
| | - Wolfgang Schuhmann
- Analytical
Chemistry—Center for Electrochemical Sciences, Faculty of Biochemistry
and Chemistry, Faculty of Biochemistry and Chemistry, Ruhr-University Bochum, Universitätsstrasse 150, D-44780 Bochum, Germany
| | - Charusheela Ramanan
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Krzysztof Gibasiewicz
- Faculty
of Physics, Adam Mickiewicz University, Poznań, ul. Uniwersytetu
Poznańskiego 2, 61-614 Poznań, Poland
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20
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Deshmukh SS, Kálmán L. Tuning the redox potential of the primary electron donor in bacterial reaction centers by manganese binding and light-induced structural changes. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2020; 1861:148285. [PMID: 32777306 DOI: 10.1016/j.bbabio.2020.148285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 08/02/2020] [Accepted: 08/04/2020] [Indexed: 11/26/2022]
Abstract
The influence of transition metal binding on the charge storage ability of native bacterial reaction centers (BRCs) was investigated. Binding of manganous ions uniquely prevented the light-induced conformational changes that would yield to long lifetimes of the charge separated state and the drop of the redox potential of the primary electron donor (P). The lifetimes of the stable charge pair in the terminal conformations were shortened by 50-fold and 7-fold upon manganous and cupric ion binding, respectively. Nickel and zinc binding had only marginal effects. Binding of manganese not only prevented the drop of the potential of P/P+ but also elevated it by up to 117 mV depending on where the metal was binding. With variable conditions, facilitating either manganese binding or light-induced structural changes a controlled tuning of the potential of P/P+ in multiple steps was demonstrated in a range of ~200 mV without the need of a mutation or synthesis. Under the selected conditions, manganese binding was achieved without its photochemical oxidation thus, the energized but still native BRCs can be utilized in photochemistry that is not reachable with regular BRCs. A 42 Å long hydrophobic tunnel was identified that became obstructed upon manganese binding and its likely role is to deliver protons from the hydrophobic core to the surface during conformational changes.
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Affiliation(s)
| | - László Kálmán
- Department of Physics, Concordia University, Montreal, QC, Canada.
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21
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22
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Espiritu E, Chamberlain KD, Williams JC, Allen JP. Bound manganese oxides capable of reducing the bacteriochlorophyll dimer of modified reaction centers from Rhodobacter sphaeroides. PHOTOSYNTHESIS RESEARCH 2020; 143:129-141. [PMID: 31641987 DOI: 10.1007/s11120-019-00680-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 10/09/2019] [Indexed: 06/10/2023]
Abstract
A biohybrid model system is described that interfaces synthetic Mn-oxides with bacterial reaction centers to gain knowledge concerning redox reactions by metal clusters in proteins, in particular the Mn4CaO5 cluster of photosystem II. The ability of Mn-oxides to bind to modified bacterial reaction centers and transfer an electron to the light-induced oxidized bacteriochlorophyll dimer, P+, was characterized using optical spectroscopy. The environment of P was altered to obtain a high P/P+ midpoint potential. In addition, different metal-binding sites were introduced by substitution of amino acid residues as well as extension of the C-terminus of the M subunit with the C-terminal region of the D1 subunit of photosystem II. The Mn-compounds MnO2, αMn2O3, Mn3O4, CaMn2O4, and Mn3(PO4)2 were tested and compared to MnCl2. In general, addition of the Mn-compounds resulted in a decrease in the amount of P+ while the reduced quinone was still present, demonstrating that the Mn-compounds can serve as secondary electron donors. The extent of P+ reduction for the Mn-oxides was largest for αMn2O3 and CaMn2O4 and smallest for Mn3O4 and MnO2. The addition of Mn3(PO4)2 resulted in nearly complete P+ reduction, similar to MnCl2. Overall, the activity was correlated with the initial oxidation state of the Mn-compound. Transient optical measurements showed a fast kinetic component, assigned to reduction of P+ by the Mn-oxide, in addition to a slow component due to charge recombination. The results support the conjecture that the incorporation of Mn-oxides by ancient anoxygenic phototrophs was a step in the evolution of oxygenic photosynthesis.
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Affiliation(s)
- Eduardo Espiritu
- School of Molecular Sciences, Arizona State University, Tempe, AZ, 85287-1604, USA
| | - Kori D Chamberlain
- School of Molecular Sciences, Arizona State University, Tempe, AZ, 85287-1604, USA
| | - JoAnn C Williams
- School of Molecular Sciences, Arizona State University, Tempe, AZ, 85287-1604, USA
| | - James P Allen
- School of Molecular Sciences, Arizona State University, Tempe, AZ, 85287-1604, USA.
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Khmelnitskiy A, Williams JC, Allen JP, Jankowiak R. Influence of Hydrogen Bonds on the Electron-Phonon Coupling Strength/Marker Mode Structure and Charge Separation Rates in Reaction Centers from Rhodobacter sphaeroides. J Phys Chem B 2019; 123:8717-8726. [PMID: 31539255 DOI: 10.1021/acs.jpcb.9b08388] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Low-temperature persistent and transient hole-burning (HB) spectra are presented for the triple hydrogen-bonded L131LH + M160LH + M197FH mutant of Rhodobacter sphaeroides. These spectra expose the heterogeneous nature of the P-, B-, and H-bands, consistent with a distribution of electron transfer (ET) times and excitation energy transfer (EET) rates. Transient P+QA- holes are observed for fast (tens of picoseconds or faster) ET times and reveal strong coupling to phonons and marker mode(s), while the persistent holes are bleached in a fraction of reaction centers with long-lived excited states characterized by much weaker electron-phonon coupling. Exposed differences in electron-phonon coupling strength, as well as a different coupling to the marker mode(s), appear to affect the ET times. Both resonantly and nonresonantly burned persistent HB spectra show weak blue- (∼150 cm-1) and large, red-shifted (∼300 cm-1) antiholes of the P band. Slower EET times from the H- and B-bands to the special pair dimer provide new insight on the influence of hydrogen bonds on mutation-induced heterogeneity.
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Affiliation(s)
| | - JoAnn C Williams
- School of Molecular Sciences , Arizona State University , Tempe , Arizona 85287 , United States
| | - James P Allen
- School of Molecular Sciences , Arizona State University , Tempe , Arizona 85287 , United States
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24
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Faries KM, Kohout CE, Wang GX, Hanson DK, Holten D, Laible PD, Kirmaier C. Consequences of saturation mutagenesis of the protein ligand to the B-side monomeric bacteriochlorophyll in reaction centers from Rhodobacter capsulatus. PHOTOSYNTHESIS RESEARCH 2019; 141:273-290. [PMID: 30859455 DOI: 10.1007/s11120-019-00626-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2018] [Accepted: 02/07/2019] [Indexed: 06/09/2023]
Abstract
In bacterial reaction centers (RCs), photon-induced initial charge separation uses an A-side bacteriochlorophyll (BChl, BA) and bacteriopheophytin (BPh, HA), while the near-mirror image B-side BB and HB cofactors are inactive. Two new sets of Rhodobacter capsulatus RC mutants were designed, both bearing substitution of all amino acids for the native histidine M180 (M-polypeptide residue 180) ligand to the core Mg ion of BB. Residues are identified that largely result in retention of a BChl in the BB site (Asp, Ser, Pro, Gln, Asn, Gly, Cys, Lys, and Thr), ones that largely harbor the Mg-free BPh in the BB site (Leu and Ile), and ones for which isolated RCs are comprised of a substantial mixture of these two RC types (Ala, Glu, Val, Met and, in one set, Arg). No protein was isolated when M180 is Trp, Tyr, Phe, or (in one set) Arg. These findings are corroborated by ground state spectra, pigment extractions, ultrafast transient absorption studies, and the yields of B-side transmembrane charge separation. The changes in coordination chemistries did not reveal an RC with sufficiently precise poising of the redox properties of the BB-site cofactor to result in a high yield of B-side electron transfer to HB. Insights are gleaned into the amino acid properties that support BChl in the BB site and into the widely observed multi-exponential decay of the excited state of the primary electron donor. The results also have direct implications for tuning free energies of the charge-separated intermediates in RCs and mimetic systems.
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Affiliation(s)
- Kaitlyn M Faries
- Department of Chemistry, Washington University, St. Louis, MO, 63130, USA
| | - Claire E Kohout
- Biosciences Division, Argonne National Laboratory, Lemont, IL, 60439, USA
| | - Grace Xiyu Wang
- Biosciences Division, Argonne National Laboratory, Lemont, IL, 60439, USA
| | - Deborah K Hanson
- Biosciences Division, Argonne National Laboratory, Lemont, IL, 60439, USA
| | - Dewey Holten
- Department of Chemistry, Washington University, St. Louis, MO, 63130, USA
| | - Philip D Laible
- Biosciences Division, Argonne National Laboratory, Lemont, IL, 60439, USA
| | - Christine Kirmaier
- Department of Chemistry, Washington University, St. Louis, MO, 63130, USA.
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25
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Fufina TY, Selikhanov GK, Proskuryakov II, Shuvalov VA, Vasilieva LG. Properties of Rhodobacter sphaeroides Reaction Centers with the Ile→Tyr Substitution at Positions L177 and M206. BIOCHEMISTRY (MOSCOW) 2019; 84:570-574. [PMID: 31234771 DOI: 10.1134/s0006297919050110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Studying pigment-protein interactions in the photosynthetic reaction centers (RCs) is important for the understanding of detailed mechanisms of the photochemical process. This paper describes spectral and photochemical characteristics, pigment composition, and stability of the Rhodobacter sphaeroides RCs with the I(L177)Y and I(M206)Y amino acid substitutions. The obtained data are compared with the properties of I(L177)H, I(L177)D, and I(M206)H RCs reported previously. It is shown that the I(L177)Y and I(M206)Y mutations cause a similar shift of the QYP band in the absorption spectra of the mutant RCs and do not affect the distribution of the electron spin density within the photo-oxidized P+ dimer. The differences in the position and amplitude of the QYB band in the I(L177)Y and I(M206)Y RCs were determined. The results indicate the possibility of new pigment-protein interactions in the vicinity of monomeric bacteriochlorophylls in the A and B chains, which might be of interest for future research.
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Affiliation(s)
- T Yu Fufina
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia.
| | - G K Selikhanov
- Institute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia
| | - I I Proskuryakov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia
| | - V A Shuvalov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia
| | - L G Vasilieva
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia
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26
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Meares A, Yu Z, Viswanathan Bhagavathy G, Satraitis A, Ptaszek M. Photoisomerization of Enediynyl Linker Leads to Slipped Cofacial Hydroporphyrin Dyads with Strong Through-Bond and Through-Space Electronic Interactions. J Org Chem 2019; 84:7851-7862. [PMID: 31117562 DOI: 10.1021/acs.joc.9b00731] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Photoisomerization of 3,4-di(methoxycarbonyl)-enediyne linker in hydroporphyrin (chlorin or bacteriochlorin) dyads leads to thermally stable cis isomers, where macrocycles adopt a slipped cofacial mutual geometry with an edge-to-edge distance of ∼3.6 Å (determined by density functional theory (DFT) calculations). Absorption spectra exhibit a significant splitting of the long-wavelength Qy band, which indicates a strong electronic coupling with a strength of V = ∼477 cm-1 that increases to 725 cm-1 upon metalation of hydroporphyrins. Each dyad features a broad, structureless emission band, with large Stokes shift, which is indicative of excimer formation. DFT calculations for dyads show both strong through-bond electronic coupling and through-space electronic interactions, due to the overlap of π-orbitals. Overall, geometry, electronic structure, strength of electronic interactions, and optical properties of reported dyads closely resemble those observed for photosynthetic special pairs. Dyads reported here represent a novel type of photoactive arrays with various modes of electronic interactions between chromophores. Combining through-bond and through-space coupling appears to be a viable strategy to engineer novel optical and photochemical properties in organic conjugated materials.
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Affiliation(s)
- Adam Meares
- Department of Chemistry and Biochemistry , University of Maryland, Baltimore County , 1000 Hilltop Circle , Baltimore , Maryland 21250 , United States
| | - Zhanqian Yu
- Department of Chemistry and Biochemistry , University of Maryland, Baltimore County , 1000 Hilltop Circle , Baltimore , Maryland 21250 , United States
| | - Ganga Viswanathan Bhagavathy
- Department of Chemistry and Biochemistry , University of Maryland, Baltimore County , 1000 Hilltop Circle , Baltimore , Maryland 21250 , United States
| | - Andrius Satraitis
- Department of Chemistry and Biochemistry , University of Maryland, Baltimore County , 1000 Hilltop Circle , Baltimore , Maryland 21250 , United States
| | - Marcin Ptaszek
- Department of Chemistry and Biochemistry , University of Maryland, Baltimore County , 1000 Hilltop Circle , Baltimore , Maryland 21250 , United States
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27
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Jun D, Beatty JT, Bizzotto D. Highly Sensitive Method to Isolate Photocurrent Signals from Large Background Redox Currents on Protein‐Modified Electrodes. ChemElectroChem 2019. [DOI: 10.1002/celc.201900249] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Daniel Jun
- Department of Microbiology and ImmunologyUniversity of British Columbia Vancouver BC V6T 1Z3 Canada
| | - J. Thomas Beatty
- Department of Microbiology and ImmunologyUniversity of British Columbia Vancouver BC V6T 1Z3 Canada
| | - Dan Bizzotto
- Department of Chemistry Advanced Materials and Process Engineering LaboratoryUniversity of British Columbia Vancouver BC V6T 1Z4 Canada
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28
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Khmelnitskiy A, Reinot T, Jankowiak R. Mixed Upper Exciton State of the Special Pair in Bacterial Reaction Centers. J Phys Chem B 2019; 123:852-859. [PMID: 30624937 DOI: 10.1021/acs.jpcb.8b12542] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Excitonic interactions between two closely separated bacteriochlorophyll a molecules (BChls) in the special pair of the reaction center (RC) of purple bacteria determine the positions and relative oscillator strengths of its two excitonic components. While the absorption of the lower excitonic band is well-defined, the position and the intensity of the upper excitonic band ( PY+) are still under debate. Recent 77 K two-dimensional electronic spectroscopy data on Rba. capsulatus suggested that the PY+ component absorbs at ∼840 nm, i.e., at a significantly lower energy than previously suggested. In the present work, we argue that the PY+ state is mixed with the excited states of the accessory BChls ( B*/ P Y+) leading to excitons contributing to the 785-825 nm spectral region which is consistent with previously published data. This conclusion is based on hole-burning/linear dichroism data and modeling studies of the excitonic structure of the RC using a non-Markovian reduced density matrix approach.
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29
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Ragni R, Leone G, la Gatta S, Rizzo G, Lo Presti M, De Leo V, Milano F, Trotta M, Farinola GM. A heptamethine cyanine dye suitable as antenna in biohybrids based on bacterial photosynthetic reaction center. ACTA ACUST UNITED AC 2018. [DOI: 10.1557/adv.2018.640] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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30
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Mandal S, Espiritu E, Akram N, Lin S, Williams JC, Allen JP, Woodbury NW. Influence of the Electrochemical Properties of the Bacteriochlorophyll Dimer on Triplet Energy-Transfer Dynamics in Bacterial Reaction Centers. J Phys Chem B 2018; 122:10097-10107. [PMID: 30351114 DOI: 10.1021/acs.jpcb.8b07985] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Energetics, protein dynamics, and electronic coupling are the key factors in controlling both electron and energy transfer in photosynthetic bacterial reaction centers (RCs). Here, we examine the rates and mechanistic pathways of the P+HA- radical-pair charge recombination, triplet state formation, and subsequent triplet energy transfer from the triplet state of the bacteriochlorophyll dimer (P) to the carotenoid in a series of mutant RCs (L131LH + M160LH (D1), L131LH + M197FH (D2), and L131LH + M160LH + M197FH (T1)) of Rhodobacter sphaeroides. In these mutants, the electronic structure of P is perturbed and the P/P+ midpoint potential is systematically increased due to addition of hydrogen bonds between P and the introduced residues. High-resolution, broad-band, transient absorption spectroscopy on the femtosecond to microsecond timescale shows that the charge recombination rate increases and the triplet energy transfer rate decreases in these mutants relative to the wild type (WT). The increase of the charge recombination rate is correlated to the increase in the energy level of P+HA- and the increase in the P/P+ midpoint potential. On the other hand, the decrease in rate of triplet energy transfer in the mutants can be explained in terms of a lower energy of 3P and a shift in the electron spin density distribution in the bacteriochlorophylls of P. The triplet energy-transfer rate follows the order of WT > L131LH + M197FH > L131LH + M160LH > L131LH + M160LH + M197FH, both at room temperature and at 77 K. A pronounced temperature dependence of the rate is observed for all of the RC samples. The activation energy associated to this process is increased in the mutants relative to WT, consistent with a lower 3P energy due to the addition of hydrogen bonds between P and the introduced residues.
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31
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Mimicry and functions of photosynthetic reaction centers. Biochem Soc Trans 2018; 46:1279-1288. [DOI: 10.1042/bst20170298] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Revised: 06/24/2018] [Accepted: 07/02/2018] [Indexed: 12/18/2022]
Abstract
The structure and function of photosynthetic reaction centers (PRCs) have been modeled by designing and synthesizing electron donor–acceptor ensembles including electron mediators, which can mimic multi-step photoinduced charge separation occurring in PRCs to obtain long-lived charge-separated states. PRCs in photosystem I (PSI) or/and photosystem II (PSII) have been utilized as components of solar cells to convert solar energy to electric energy. Biohybrid photoelectrochemical cells composed of PSII have also been developed for solar-driven water splitting into H2 and O2. Such a strategy to bridge natural photosynthesis with artificial photosynthesis is discussed in this minireview.
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32
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Biohybrid solar cells: Fundamentals, progress, and challenges. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C-PHOTOCHEMISTRY REVIEWS 2018. [DOI: 10.1016/j.jphotochemrev.2018.04.001] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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33
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Kangur L, Jones MR, Freiberg A. Hydrogen bonds in the vicinity of the special pair of the bacterial reaction center probed by hydrostatic high-pressure absorption spectroscopy. Biophys Chem 2017; 231:27-33. [PMID: 28438349 DOI: 10.1016/j.bpc.2017.04.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Revised: 04/06/2017] [Accepted: 04/06/2017] [Indexed: 10/19/2022]
Abstract
Using the native bacteriochlorophyll a pigment cofactors as local probes, we investigated the response to external hydrostatic high pressure of reaction center membrane protein complexes from the photosynthetic bacterium Rhodobacter sphaeroides. Wild-type and engineered complexes were used with a varied number (0, 1 or 2) of hydrogen bonds that bind the reaction center primary donor bacteriochlorophyll cofactors to the surrounding protein scaffold. A pressure-induced breakage of hydrogen bonds was established for both detergent-purified and membrane-embedded reaction centers, but at rather different pressures: between 0.2 and 0.3GPa and at about 0.55GPa, respectively. The free energy change associated with the rupture of the single hydrogen bond present in wild-type reaction centers was estimated to be equal to 13-14kJ/mol. In the mutant with two symmetrical hydrogen bonds (FM197H) a single cooperative rupture of the two bonds was observed corresponding to an about twice stronger bond, rather than a sequential rupture of two individual bonds.
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Affiliation(s)
- Liina Kangur
- Institute of Physics, University of Tartu, W. Ostwald Str. 1, 50411 Tartu, Estonia
| | - Michael R Jones
- School of Biochemistry, University of Bristol, Biomedical Sciences Building, University Walk, Bristol, BS8 1TD, United Kingdom
| | - Arvi Freiberg
- Institute of Physics, University of Tartu, W. Ostwald Str. 1, 50411 Tartu, Estonia; Institute of Molecular and Cell Biology, University of Tartu, Riia 23, 51010 Tartu, Estonia.
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34
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Möbius K, Lubitz W, Savitsky A. Jim Hyde and the ENDOR Connection: A Personal Account. APPLIED MAGNETIC RESONANCE 2017; 48:1149-1183. [PMID: 29151676 PMCID: PMC5668355 DOI: 10.1007/s00723-017-0959-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Indexed: 06/07/2023]
Abstract
In this minireview, we report on our year-long EPR work, such as electron-nuclear double resonance (ENDOR), pulse electron double resonance (PELDOR) and ELDOR-detected NMR (EDNMR) at X-band and W-band microwave frequencies and magnetic fields. This report is dedicated to James S. Hyde and honors his pioneering contributions to the measurement of spin interactions in large (bio)molecules. From these interactions, detailed information is revealed on structure and dynamics of macromolecules embedded in liquid-solution or solid-state environments. New developments in pulsed microwave and sweepable cryomagnet technology as well as ultra-fast electronics for signal data handling and processing have pushed the limits of EPR spectroscopy and its multi-frequency extensions to new horizons concerning sensitivity of detection, selectivity of molecular interactions and time resolution. Among the most important advances is the upgrading of EPR to high magnetic fields, very much in analogy to what happened in NMR. The ongoing progress in EPR spectroscopy is exemplified by reviewing various multi-frequency electron-nuclear double-resonance experiments on organic radicals, light-generated donor-acceptor radical pairs in photosynthesis, and site-specifically nitroxide spin-labeled bacteriorhodopsin, the light-driven proton pump, as well as EDNMR and ENDOR on nitroxides. Signal and resolution enhancements are particularly spectacular for ENDOR, EDNMR and PELDOR on frozen-solution samples at high Zeeman fields. They provide orientation selection for disordered samples approaching single-crystal resolution at canonical g-tensor orientations-even for molecules with small g-anisotropies. Dramatic improvements of EPR detection sensitivity could be achieved, even for short-lived paramagnetic reaction intermediates. Thus, unique structural and dynamic information is revealed that can hardly be obtained by other analytical techniques. Micromolar concentrations of sample molecules have become sufficient to characterize stable and transient reaction intermediates of complex molecular systems-offering exciting applications for physicists, chemists, biochemists and molecular biologists.
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Affiliation(s)
- Klaus Möbius
- Department of Physics, Free University Berlin, Arnimallee 14, 14195 Berlin, Germany
- Max-Planck-Institute for Chemical Energy Conversion, 45470 Mülheim an der Ruhr, Germany
| | - Wolfgang Lubitz
- Max-Planck-Institute for Chemical Energy Conversion, 45470 Mülheim an der Ruhr, Germany
| | - Anton Savitsky
- Max-Planck-Institute for Chemical Energy Conversion, 45470 Mülheim an der Ruhr, Germany
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35
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Faries KM, Dylla NP, Hanson DK, Holten D, Laible PD, Kirmaier C. Manipulating the Energetics and Rates of Electron Transfer in Rhodobacter capsulatus Reaction Centers with Asymmetric Pigment Content. J Phys Chem B 2017; 121:6989-7004. [DOI: 10.1021/acs.jpcb.7b01389] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kaitlyn M. Faries
- Department
of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Nicholas P. Dylla
- Biosciences Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Deborah K. Hanson
- Biosciences Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Dewey Holten
- Department
of Chemistry, Washington University, St. Louis, Missouri 63130, United States
| | - Philip D. Laible
- Biosciences Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Christine Kirmaier
- Department
of Chemistry, Washington University, St. Louis, Missouri 63130, United States
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36
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Mandal S, Carey AM, Locsin J, Gao BR, Williams JC, Allen JP, Lin S, Woodbury NW. Mechanism of Triplet Energy Transfer in Photosynthetic Bacterial Reaction Centers. J Phys Chem B 2017; 121:6499-6510. [DOI: 10.1021/acs.jpcb.7b03373] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Sarthak Mandal
- Center
for Innovations in Medicine, The Biodesign Institute at ASU, Arizona State University, Tempe, Arizona 85287, United States
| | - Anne-Marie Carey
- Center
for Innovations in Medicine, The Biodesign Institute at ASU, Arizona State University, Tempe, Arizona 85287, United States
| | - Joshua Locsin
- Center
for Innovations in Medicine, The Biodesign Institute at ASU, Arizona State University, Tempe, Arizona 85287, United States
| | | | - JoAnn C. Williams
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287−1604, United States
| | - James P. Allen
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287−1604, United States
| | - Su Lin
- Center
for Innovations in Medicine, The Biodesign Institute at ASU, Arizona State University, Tempe, Arizona 85287, United States
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287−1604, United States
| | - Neal W. Woodbury
- Center
for Innovations in Medicine, The Biodesign Institute at ASU, Arizona State University, Tempe, Arizona 85287, United States
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287−1604, United States
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37
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Khatypov RA, Khristin AM, Fufina TY, Shuvalov VA. An Alternative Pathway of Light-Induced Transmembrane Electron Transfer in Photosynthetic Reaction Centers of Rhodobacter sphaeroides. BIOCHEMISTRY (MOSCOW) 2017; 82:692-697. [PMID: 28601078 DOI: 10.1134/s0006297917060050] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
In the absorption spectrum of Rhodobacter sphaeroides reaction centers, a minor absorption band was found with a maximum at 1053 nm. The amplitude of this band is ~10,000 times less and its half-width is comparable to that of the long-wavelength absorption band of the primary electron donor P870. When the primary electron donor is excited by femtosecond light pulses at 870 nm, the absorption band at 1053 nm is increased manifold during the earliest stages of charge separation. The growth of this absorption band in difference absorption spectra precedes the appearance of stimulated emission at 935 nm and the appearance of the absorption band of anion-radical BA- at 1020 nm, reported earlier by several researchers. When reaction centers are illuminated with 1064 nm light, the absorption spectrum undergoes changes indicating reduction of the primary electron acceptor QA, with the primary electron donor P870 remaining neutral. These photoinduced absorption changes reflect the formation of the long-lived radical state PBAHAQA-.
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Affiliation(s)
- R A Khatypov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia.
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38
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Watanabe H, Kamatani Y, Tamiaki H. Coordination-Driven Dimerization of Zinc Chlorophyll Derivatives Possessing a Dialkylamino Group. Chem Asian J 2017; 12:759-767. [PMID: 28176492 DOI: 10.1002/asia.201700015] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Revised: 02/04/2017] [Indexed: 11/08/2022]
Abstract
Zinc chlorophyll derivatives Zn-1-3 possessing a tertiary amino group at the C31 position have been synthesized through reductive amination of methyl pyropheophorbide-d obtained from naturally occurring chlorophyll-a. In a dilute CH2 Cl2 solution as well as in a dilute 10 %(v/v) CH2 Cl2 /hexane solution, Zn-1 possessing a dimethylamino group at the C31 position showed red-shifted UV/Vis absorption and intensified exciton-coupling circular dichroism (CD) spectra at room temperature owing to its dimer formation via coordination to the central zinc by the 31 -N atom of the dimethylamino group. However, Zn-2/3 bearing 31 -ethylmethylamino/diethylamino groups did not. The difference was dependent on the steric factor of the substituents in the tertiary amino group, where an increase of the carbon numbers on the N atom reduced the intermolecular N⋅⋅⋅Zn coordination. UV/Vis, CD, and 1 H NMR spectroscopic analyses including DOSY measurements revealed that Zn-1 formed closed-type dimers via an opened dimer by single-to-double axial coordination with an increase in concentration and a temperature decrease in CH2 Cl2 , while Zn-2/3 gave open and flexible dimers in a concentrated CH2 Cl2 solution at low temperature. The supramolecular closed dimer structures of Zn-1 were estimated by molecular modelling calculations, which showed these structures were promising models for the chlorophyll dimer in a photosynthetic reaction center.
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Affiliation(s)
- Hiroaki Watanabe
- Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, 525-8577, Japan
| | - Yusuke Kamatani
- Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, 525-8577, Japan
| | - Hitoshi Tamiaki
- Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, 525-8577, Japan
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39
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Nalepa A, Malferrari M, Lubitz W, Venturoli G, Möbius K, Savitsky A. Local water sensing: water exchange in bacterial photosynthetic reaction centers embedded in a trehalose glass studied using multiresonance EPR. Phys Chem Chem Phys 2017; 19:28388-28400. [DOI: 10.1039/c7cp03942e] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Pulsed EPR spectroscopies and isotope labeled water are applied to detect and quantify the local water in a bacterial reaction center embedded into a trehalose glass.
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Affiliation(s)
- Anna Nalepa
- Max-Planck-Institut für Chemische Energiekonversion
- D-45470 Mülheim an der Ruhr
- Germany
| | - Marco Malferrari
- Laboratorio di Biochimica e Biofisica
- Dipartimento di Farmacia e Biotecnologie
- FaBiT
- Università di Bologna
- I-40126 Bologna
| | - Wolfgang Lubitz
- Max-Planck-Institut für Chemische Energiekonversion
- D-45470 Mülheim an der Ruhr
- Germany
| | - Giovanni Venturoli
- Laboratorio di Biochimica e Biofisica
- Dipartimento di Farmacia e Biotecnologie
- FaBiT
- Università di Bologna
- I-40126 Bologna
| | - Klaus Möbius
- Max-Planck-Institut für Chemische Energiekonversion
- D-45470 Mülheim an der Ruhr
- Germany
- Department of Physics
- Free University Berlin
| | - Anton Savitsky
- Max-Planck-Institut für Chemische Energiekonversion
- D-45470 Mülheim an der Ruhr
- Germany
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Zhang H, Harrington LB, Lu Y, Prado M, Saer R, Rempel D, Blankenship RE, Gross ML. Native Mass Spectrometry Characterizes the Photosynthetic Reaction Center Complex from the Purple Bacterium Rhodobacter sphaeroides. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2017; 28:87-95. [PMID: 27506206 PMCID: PMC5613939 DOI: 10.1007/s13361-016-1451-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Revised: 07/07/2016] [Accepted: 07/10/2016] [Indexed: 06/06/2023]
Abstract
Native mass spectrometry (MS) is an emerging approach to study protein complexes in their near-native states and to elucidate their stoichiometry and topology. Here, we report a native MS study of the membrane-embedded reaction center (RC) protein complex from the purple photosynthetic bacterium Rhodobacter sphaeroides. The membrane-embedded RC protein complex is stabilized by detergent micelles in aqueous solution, directly introduced into a mass spectrometer by nano-electrospray (nESI), and freed of detergents and dissociated in the gas phase by collisional activation. As the collision energy is increased, the chlorophyll pigments are gradually released from the RC complex, suggesting that native MS introduces a near-native structure that continues to bind pigments. Two bacteriochlorophyll a pigments remain tightly bound to the RC protein at the highest collision energy. The order of pigment release and their resistance to release by gas-phase activation indicates the strength of pigment interaction in the RC complex. This investigation sets the stage for future native MS studies of membrane-embedded photosynthetic pigment-protein and related complexes.Graphical Abstract.
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Affiliation(s)
- Hao Zhang
- Department of Chemistry, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA
- Photosynthetic Antenna Research Center, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA
| | - Lucas B Harrington
- Department of Chemistry, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA
| | - Yue Lu
- Department of Chemistry, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA
- Photosynthetic Antenna Research Center, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA
| | - Mindy Prado
- Department of Biology, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA
- Photosynthetic Antenna Research Center, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA
| | - Rafael Saer
- Department of Biology, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA
- Photosynthetic Antenna Research Center, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA
| | - Don Rempel
- Department of Chemistry, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA
| | - Robert E Blankenship
- Department of Chemistry, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA.
- Department of Biology, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA.
- Photosynthetic Antenna Research Center, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA.
| | - Michael L Gross
- Department of Chemistry, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA.
- Photosynthetic Antenna Research Center, Washington University in St. Louis, One Brookings Dr., St. Louis, MO, 63130, USA.
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Saegusa Y, Ishizuka T, Shiota Y, Yoshizawa K, Kojima T. Acid–Base Properties of a Freebase Form of a Quadruply Ring-Fused Porphyrin—Stepwise Protonation Induced by Rigid Ring-Fused Structure. J Org Chem 2016; 82:322-330. [DOI: 10.1021/acs.joc.6b02419] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Yuta Saegusa
- Department
of Chemistry, Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8571, Japan
| | - Tomoya Ishizuka
- Department
of Chemistry, Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8571, Japan
| | - Yoshihito Shiota
- Institute
for Materials Chemistry and Engineering, Kyushu University, Motooka, Nishi-Ku,
Fukuoka 819-0395, Japan
| | - Kazunari Yoshizawa
- Institute
for Materials Chemistry and Engineering, Kyushu University, Motooka, Nishi-Ku,
Fukuoka 819-0395, Japan
| | - Takahiko Kojima
- Department
of Chemistry, Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8571, Japan
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42
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Yu LJ, Kawakami T, Kimura Y, Wang-Otomo ZY. Structural Basis for the Unusual Q y Red-Shift and Enhanced Thermostability of the LH1 Complex from Thermochromatium tepidum. Biochemistry 2016; 55:6495-6504. [PMID: 27933779 DOI: 10.1021/acs.biochem.6b00742] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
While the majority of the core light-harvesting complexes (LH1) in purple photosynthetic bacteria exhibit a Qy absorption band in the range of 870-890 nm, LH1 from the thermophilic bacterium Thermochromatium tepidum displays the Qy band at 915 nm with an enhanced thermostability. These properties are regulated by Ca2+ ions. Substitution of the Ca2+ with other divalent metal ions results in a complex with the Qy band blue-shifted to 880-890 nm and a reduced thermostability. Following the recent publication of the structure of the Ca-bound LH1-reaction center (RC) complex [Niwa, S., et al. (2014) Nature 508, 228], we have determined the crystal structures of the Sr- and Ba-substituted LH1-RC complexes with the LH1 Qy band at 888 nm. Sixteen Sr2+ and Ba2+ ions are identified in the LH1 complexes. Both Sr2+ and Ba2+ are located at the same positions, and these are clearly different from, though close to, the Ca2+-binding sites. Conformational rearrangement induced by the substitution is limited to the metal-binding sites. Unlike the Ca-LH1-RC complex, only the α-polypeptides are involved in the Sr and Ba coordinations in LH1. The difference in the thermostability between these complexes can be attributed to the different patterns of the network formed by metal binding. The Sr- and Ba-LH1-RC complexes form a single-ring network by the LH1 α-polypeptides only, in contrast to the double-ring network composed of both α- and β-polypeptides in the Ca-LH1-RC complex. On the basis of the structural information, a combined effect of hydrogen bonding, structural integrity, and charge distribution is considered to influence the spectral properties of the core antenna complex.
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Affiliation(s)
- Long-Jiang Yu
- Faculty of Science, Ibaraki University , Mito 310-8512, Japan
| | | | - Yukihiro Kimura
- Department of Agrobioscience, Graduate School of Agriculture, Kobe University , Nada, Kobe 657-8501, Japan
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Lee SH, Blake IM, Larsen AG, McDonald JA, Ohkubo K, Fukuzumi S, Reimers JR, Crossley MJ. Synthetically tuneable biomimetic artificial photosynthetic reaction centres that closely resemble the natural system in purple bacteria. Chem Sci 2016; 7:6534-6550. [PMID: 27928494 PMCID: PMC5125414 DOI: 10.1039/c6sc01076h] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Accepted: 06/16/2016] [Indexed: 12/18/2022] Open
Abstract
Porphyrin-based photosynthetic reaction centre (PRC) mimics, ZnPQ-Q2HP-C60 and MP2Q-Q2HP-C60 (M = Zn or 2H), designed to have a similar special-pair electron donor and similar charge-separation distances, redox processes and photochemical reaction rates to those in the natural PRC from purple bacteria, have been synthesised and extensive photochemical studies performed. Mechanisms of electron-transfer reactions are fully investigated using femtosecond and nanosecond transient absorption spectroscopy. In benzonitrile, all models show picosecond-timescale charge-separations and the final singlet charge-separations with the microsecond-timescale. The established lifetimes are long compared to other processes in organic solar cells or other organic light harvesting systems. These rigid, synthetically flexible molecules provide the closest mimics to the natural PRC so far synthesised and present a future direction for the design of light harvesters with controllable absorption, redox, and kinetics properties.
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Affiliation(s)
- Sai-Ho Lee
- School of Chemistry F11 , The University of Sydney , 2006 , NSW , Australia .
| | - Iain M Blake
- School of Chemistry F11 , The University of Sydney , 2006 , NSW , Australia .
| | - Allan G Larsen
- School of Chemistry F11 , The University of Sydney , 2006 , NSW , Australia .
| | - James A McDonald
- School of Chemistry F11 , The University of Sydney , 2006 , NSW , Australia .
| | - Kei Ohkubo
- Department of Material and Life Science , Graduate School of Engineering , Osaka University , Suita , Osaka 565-0871 , Japan .
| | - Shunichi Fukuzumi
- Department of Chemistry and Nano Science , Ewha Womans University , Seoul 120-750 , Korea ; Faculty of Science and Engineering , Meijo University , Nagoya , Aichi 468-0073 , Japan
| | - Jeffrey R Reimers
- School of Chemistry F11 , The University of Sydney , 2006 , NSW , Australia . ; International Centre for Quantum and Molecular Structure , Shanghai University , 200444 , Shanghai , China . ; School of Mathematical and Physical Sciences , The University of Technology Sydney , 2007 , NSW , Australia .
| | - Maxwell J Crossley
- School of Chemistry F11 , The University of Sydney , 2006 , NSW , Australia .
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Zheng F, Jin M, Mančal T, Zhao Y. Study of Electronic Structures and Pigment–Protein Interactions in the Reaction Center of Thermochromatium tepidum with a Dynamic Environment. J Phys Chem B 2016; 120:10046-10058. [DOI: 10.1021/acs.jpcb.6b06628] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Fulu Zheng
- Division
of Materials Science, Nanyang Technological University, Singapore 639798, Singapore
| | - Mengting Jin
- Division
of Materials Science, Nanyang Technological University, Singapore 639798, Singapore
| | - Tomáš Mančal
- Faculty
of Mathematics and Physics, Charles University in Prague, Ke Karlovu
5, 121 16 Prague
2, Czech Republic
| | - Yang Zhao
- Division
of Materials Science, Nanyang Technological University, Singapore 639798, Singapore
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Białek R, Burdziński G, Jones MR, Gibasiewicz K. Bacteriopheophytin triplet state in Rhodobacter sphaeroides reaction centers. PHOTOSYNTHESIS RESEARCH 2016; 129:205-216. [PMID: 27368166 PMCID: PMC4935742 DOI: 10.1007/s11120-016-0290-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2015] [Accepted: 06/21/2016] [Indexed: 06/06/2023]
Abstract
It is well established that photoexcitation of Rhodobacter sphaeroides reaction centers (RC) with reduced quinone acceptors results in the formation of a triplet state localized on the primary electron donor P with a significant yield. The energy of this long-lived and therefore potentially damaging excited state is then efficiently quenched by energy transfer to the RC spheroidenone carotenoid, with its subsequent decay to the ground state by intersystem crossing. In this contribution, we present a detailed transient absorption study of triplet states in a set of mutated RCs characterized by different efficiencies of triplet formation that correlate with lifetimes of the initial charge-separated state P(+)H A (-) . On a microsecond time scale, two types of triplet state were detected: in addition to the well-known spheroidenone triplet state with a lifetime of ~4 μs, in some RCs we discovered a bacteriopheophytin triplet state with a lifetime of ~40 μs. As expected, the yield of the carotenoid triplet increased approximately linearly with the lifetime of P(+)H A (-) , reaching the value of 42 % for one of the mutants. However, surprisingly, the yield of the bacteriopheophytin triplet was the highest in RCs with the shortest P(+)H A (-) lifetime and the smallest yield of carotenoid triplet. For these the estimated yield of bacteriopheophytin triplet was comparable with the yield of the carotenoid triplet, reaching a value of ~7 %. Possible mechanisms of formation of the bacteriopheophytin triplet state are discussed.
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Affiliation(s)
- Rafał Białek
- Faculty of Physics, Adam Mickiewicz University in Poznań, ul. Umultowska 85, 61-614, Poznan, Poland.
| | - Gotard Burdziński
- Faculty of Physics, Adam Mickiewicz University in Poznań, ul. Umultowska 85, 61-614, Poznan, Poland
| | - Michael R Jones
- School of Biochemistry, Medical Sciences Building, University of Bristol, University Walk, Bristol, BS8 1TD, UK
| | - Krzysztof Gibasiewicz
- Faculty of Physics, Adam Mickiewicz University in Poznań, ul. Umultowska 85, 61-614, Poznan, Poland
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Dylla NP, Faries KM, Wyllie RM, Swenson AM, Hanson DK, Holten D, Kirmaier C, Laible PD. Species differences in unlocking B‐side electron transfer in bacterial reaction centers. FEBS Lett 2016; 590:2515-26. [DOI: 10.1002/1873-3468.12264] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2016] [Accepted: 06/13/2016] [Indexed: 11/09/2022]
Affiliation(s)
| | | | - Ryan M. Wyllie
- Biosciences Division Argonne National Laboratory Lemont IL USA
| | | | | | - Dewey Holten
- Department of Chemistry Washington University St. Louis MO USA
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47
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Faries KM, Kressel LL, Dylla NP, Wander MJ, Hanson DK, Holten D, Laible PD, Kirmaier C. Optimizing multi-step B-side charge separation in photosynthetic reaction centers from Rhodobacter capsulatus. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2016; 1857:150-159. [DOI: 10.1016/j.bbabio.2015.11.013] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Revised: 11/20/2015] [Accepted: 11/30/2015] [Indexed: 11/16/2022]
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49
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Zwoliński KM, Eilmes J. New developments in porphyrin-like macrocyclic chemistry: a novel family of dibenzotetraaza[14]annulene-based cofacial dimers. Chem Commun (Camb) 2016; 52:4084-7. [DOI: 10.1039/c6cc00019c] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The first known cofacial dimers, based on covalently linked dibenzotetraaza[14]annulenes, were synthesized in reasonable 35–40% yields, without recourse to high-dilution techniques.
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Affiliation(s)
- K. M. Zwoliński
- Faculty of Chemistry
- Biological and Chemical Research Centre
- University of Warsaw
- 02-089 Warszawa
- Poland
| | - J. Eilmes
- Faculty of Chemistry
- Jagiellonian University
- 30-060 Kraków
- Poland
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50
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Niederman RA. Development and dynamics of the photosynthetic apparatus in purple phototrophic bacteria. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2015; 1857:232-46. [PMID: 26519773 DOI: 10.1016/j.bbabio.2015.10.014] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2015] [Revised: 10/22/2015] [Accepted: 10/25/2015] [Indexed: 11/30/2022]
Abstract
The purple bacterium Rhodobacter sphaeroides provides a useful model system for studies of the assembly and dynamics of bacterial photosynthetic membranes. For the nascent developing membrane, proteomic analyses showed an ~2-fold enrichment in general membrane assembly factors, compared to chromatophores. When the protonophore carbonyl-cyanide m-chlorophenyl-hydrazone (CCCP) was added to an ICM inducing culture, an ~2-fold elevation in spectral counts vs. the control was seen for the SecA translocation ATPase, the preprotein translocase SecY, SecD and SecF insertion components, and chaperonins DnaJ and DnaK, which act early in the assembly process. It is suggested that these factors accumulated with their nascent polypeptides, as putative assembly intermediates in a functionally arrested state. Since in Synechocystis PCC 6803, a link has been established between Chl delivery involving the high-light HilD protein and the SecY/YidC-requiring cotranslational insertion of nascent polypeptides, such a connection between BChl biosynthesis and insertion and folding of nascent Rba. sphaeroides BChl binding proteins is likely to also occur. AFM imaging studies of the formation of the reaction center (RC)-light harvesting 1 (LH1) complex suggested a cooperative assembly mechanism in which, following the association between the RC template and the initial LH1 unit, addition of successive LH1 units to the RC drives the assembly process to completion. Alterations in membrane dynamics as the developing membrane becomes filled with LH2-rings were assessed by fluorescence induction/relaxation kinetics, which showed a slowing in RC electron transfer rate thought to mainly reflect alterations in donor side electron transfer. This was attributed to an increased distance for electron flow in cytochrome c2 between the RC and cytochrome bc1 complexes, as suggested in the current structural models. This article is part of a Special Issue entitled Organization and dynamics of bioenergetic systems in bacteria, edited by Prof Conrad Mullineaux.
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Affiliation(s)
- Robert A Niederman
- Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, 604 Allison Road, Piscataway, New Jersey 08854-8082, United States.
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