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For: Phadnis SH, Berg DE. Identification of base pairs in the outside end of insertion sequence IS50 that are needed for IS50 and Tn5 transposition. Proc Natl Acad Sci U S A 1987;84:9118-22. [PMID: 2827168 PMCID: PMC299703 DOI: 10.1073/pnas.84.24.9118] [Citation(s) in RCA: 34] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
Number Cited by Other Article(s)
1
Golaz D, Papenfuhs CK, Bellés-Sancho P, Eberl L, Egli M, Pessi G. RNA-seq analysis in simulated microgravity unveils down-regulation of the beta-rhizobial siderophore phymabactin. NPJ Microgravity 2024;10:44. [PMID: 38570513 PMCID: PMC10991261 DOI: 10.1038/s41526-024-00391-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Accepted: 03/25/2024] [Indexed: 04/05/2024]  Open
2
Identification of Key Factors for Anoxic Survival of B. cenocepacia H111. Int J Mol Sci 2022;23:ijms23094560. [PMID: 35562951 PMCID: PMC9104464 DOI: 10.3390/ijms23094560] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 04/11/2022] [Accepted: 04/15/2022] [Indexed: 11/21/2022]  Open
3
Bellés-Sancho P, Lardi M, Liu Y, Eberl L, Zamboni N, Bailly A, Pessi G. Metabolomics and Dual RNA-Sequencing on Root Nodules Revealed New Cellular Functions Controlled by Paraburkholderia phymatum NifA. Metabolites 2021;11:metabo11070455. [PMID: 34357349 PMCID: PMC8305402 DOI: 10.3390/metabo11070455] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 07/02/2021] [Accepted: 07/12/2021] [Indexed: 01/25/2023]  Open
4
Vitale A, Pessi G, Urfer M, Locher HH, Zerbe K, Obrecht D, Robinson JA, Eberl L. Identification of Genes Required for Resistance to Peptidomimetic Antibiotics by Transposon Sequencing. Front Microbiol 2020;11:1681. [PMID: 32793157 PMCID: PMC7390954 DOI: 10.3389/fmicb.2020.01681] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Accepted: 06/26/2020] [Indexed: 12/27/2022]  Open
5
Naorem SS, Han J, Zhang SY, Zhang J, Graham LB, Song A, Smith CV, Rashid F, Guo H. Efficient transposon mutagenesis mediated by an IPTG-controlled conditional suicide plasmid. BMC Microbiol 2018;18:158. [PMID: 30355324 PMCID: PMC6201506 DOI: 10.1186/s12866-018-1319-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 10/16/2018] [Indexed: 11/17/2022]  Open
6
Chung CH, Walter MH, Yang L, Chen SCG, Winston V, Thomas MA. Predicting genome terminus sequences of Bacillus cereus-group bacteriophage using next generation sequencing data. BMC Genomics 2017;18:350. [PMID: 28472946 PMCID: PMC5418689 DOI: 10.1186/s12864-017-3744-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Accepted: 04/28/2017] [Indexed: 11/10/2022]  Open
7
Wagner A. Cooperation is fleeting in the world of transposable elements. PLoS Comput Biol 2007;2:e162. [PMID: 17140282 PMCID: PMC1676026 DOI: 10.1371/journal.pcbi.0020162] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2006] [Accepted: 10/13/2006] [Indexed: 11/29/2022]  Open
8
Goyer C, Ullrich MS. Identification of low-temperature-regulated genes in the fire blight pathogen Erwinia amylovora. Can J Microbiol 2006;52:468-75. [PMID: 16699572 DOI: 10.1139/w05-153] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
9
Ullrich MS, Schergaut M, Boch J, Ullrich B. Temperature-responsive genetic loci in the plant pathogen Pseudomonas syringae pv. glycinea. MICROBIOLOGY (READING, ENGLAND) 2000;146 ( Pt 10):2457-2468. [PMID: 11021922 DOI: 10.1099/00221287-146-10-2457] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
10
Bhasin A, Goryshin IY, Steiniger-White M, York D, Reznikoff WS. Characterization of a Tn5 pre-cleavage synaptic complex. J Mol Biol 2000;302:49-63. [PMID: 10964560 DOI: 10.1006/jmbi.2000.4048] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
11
Zhou M, Bhasin A, Reznikoff WS. Molecular genetic analysis of transposase-end DNA sequence recognition: cooperativity of three adjacent base-pairs in specific interaction with a mutant Tn5 transposase. J Mol Biol 1998;276:913-25. [PMID: 9566196 DOI: 10.1006/jmbi.1997.1579] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
12
Jilk RA, York D, Reznikoff WS. The organization of the outside end of transposon Tn5. J Bacteriol 1996;178:1671-9. [PMID: 8626296 PMCID: PMC177853 DOI: 10.1128/jb.178.6.1671-1679.1996] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]  Open
13
Jilk RA, Makris JC, Borchardt L, Reznikoff WS. Implications of Tn5-associated adjacent deletions. J Bacteriol 1993;175:1264-71. [PMID: 8383110 PMCID: PMC193210 DOI: 10.1128/jb.175.5.1264-1271.1993] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]  Open
14
Woodworth DL, Kreuzer KN. A system of transposon mutagenesis for bacteriophage T4. Mol Microbiol 1992;6:1289-96. [PMID: 1322484 DOI: 10.1111/j.1365-2958.1992.tb00850.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
15
Zhao ZY, Sundaresan V. Binding sites for maize nuclear proteins in the terminal inverted repeats of the Mu1 transposable element. MOLECULAR & GENERAL GENETICS : MGG 1991;229:17-26. [PMID: 1654508 DOI: 10.1007/bf00264208] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
16
Lodge JK, Weston-Hafer K, Berg DE. Tn5 insertion specificity is not influenced by IS50 end sequences in target DNA. MOLECULAR & GENERAL GENETICS : MGG 1991;228:312-5. [PMID: 1653404 DOI: 10.1007/bf00282482] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
17
Zhou JH, Myers A, Atherly AG. Functional analysis of the 3'-terminal sequence of the maize controlling element (Ac) by internal replacement and deletion mutagenesis. Genetica 1991;84:13-21. [PMID: 1651880 DOI: 10.1007/bf00123980] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
18
Herrero M, de Lorenzo V, Timmis KN. Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol 1990;172:6557-67. [PMID: 2172216 PMCID: PMC526845 DOI: 10.1128/jb.172.11.6557-6567.1990] [Citation(s) in RCA: 1223] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
19
Tomcsanyi T, Berg CM, Phadnis SH, Berg DE. Intramolecular transposition by a synthetic IS50 (Tn5) derivative. J Bacteriol 1990;172:6348-54. [PMID: 2172212 PMCID: PMC526819 DOI: 10.1128/jb.172.11.6348-6354.1990] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
20
Lodge JK, Berg DE. Mutations that affect Tn5 insertion into pBR322: importance of local DNA supercoiling. J Bacteriol 1990;172:5956-60. [PMID: 2170333 PMCID: PMC526917 DOI: 10.1128/jb.172.10.5956-5960.1990] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
21
Wiater LA, Grindley ND. Integration host factor increases the transpositional immunity conferred by gamma delta ends. J Bacteriol 1990;172:4951-8. [PMID: 2168370 PMCID: PMC213150 DOI: 10.1128/jb.172.9.4951-4958.1990] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
22
Tenzen T, Matsutani S, Ohtsubo E. Site-specific transposition of insertion sequence IS630. J Bacteriol 1990;172:3830-6. [PMID: 2163390 PMCID: PMC213363 DOI: 10.1128/jb.172.7.3830-3836.1990] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
23
Makris JC, Nordmann PL, Reznikoff WS. Integration host factor plays a role in IS50 and Tn5 transposition. J Bacteriol 1990;172:1368-73. [PMID: 2155200 PMCID: PMC208607 DOI: 10.1128/jb.172.3.1368-1373.1990] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
24
Phadnis SH, Huang HV, Berg DE. Tn5supF, a 264-base-pair transposon derived from Tn5 for insertion mutagenesis and sequencing DNAs cloned in phage lambda. Proc Natl Acad Sci U S A 1989;86:5908-12. [PMID: 2548192 PMCID: PMC297740 DOI: 10.1073/pnas.86.15.5908] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
25
Martin C, Grinsted J, de la Cruz F. Effects of variation of inverted-repeat sequences on reactions mediated by the transposase of Tn21. J Bacteriol 1989;171:3996-4001. [PMID: 2544566 PMCID: PMC210153 DOI: 10.1128/jb.171.7.3996-4001.1989] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
26
Mullins MC, Rio DC, Rubin GM. cis-acting DNA sequence requirements for P-element transposition. Genes Dev 1989;3:729-38. [PMID: 2545527 DOI: 10.1101/gad.3.5.729] [Citation(s) in RCA: 93] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
27
Rio DC, Rubin GM. Identification and purification of a Drosophila protein that binds to the terminal 31-base-pair inverted repeats of the P transposable element. Proc Natl Acad Sci U S A 1988;85:8929-33. [PMID: 2848246 PMCID: PMC282620 DOI: 10.1073/pnas.85.23.8929] [Citation(s) in RCA: 72] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
28
Chow WY, Berg DE. Tn5tac1, a derivative of transposon Tn5 that generates conditional mutations. Proc Natl Acad Sci U S A 1988;85:6468-72. [PMID: 2842773 PMCID: PMC281994 DOI: 10.1073/pnas.85.17.6468] [Citation(s) in RCA: 72] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
29
Makris JC, Nordmann PL, Reznikoff WS. Mutational analysis of insertion sequence 50 (IS50) and transposon 5 (Tn5) ends. Proc Natl Acad Sci U S A 1988;85:2224-8. [PMID: 2832849 PMCID: PMC279962 DOI: 10.1073/pnas.85.7.2224] [Citation(s) in RCA: 52] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
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