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For: Scholl D, Nixon BT. Cooperative binding of DctD to the dctA upstream activation sequence of Rhizobium meliloti is enhanced in a constitutively active truncated mutant. J Biol Chem 1996;271:26435-42. [PMID: 8824302 DOI: 10.1074/jbc.271.42.26435] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
Number Cited by Other Article(s)
1
Xu X, Liu L, Xu L, Zhang Y, Hafeez R, Ijaz M, Ali HM, Shahid MS, Ahmed T, Ondrasek G, Li B. Regulatory mechanism of C4-dicarboxylates in cyclo (Phe-Pro) production. Microb Cell Fact 2024;23:255. [PMID: 39342283 PMCID: PMC11437626 DOI: 10.1186/s12934-024-02527-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Accepted: 09/11/2024] [Indexed: 10/01/2024]  Open
2
Kang S, Jang BR, Lee KH. Characterization of the transcriptionally active form of dephosphorylated DctD complexed with dephospho-IIAGlc. mBio 2024;15:e0033024. [PMID: 38564689 PMCID: PMC11077940 DOI: 10.1128/mbio.00330-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Accepted: 02/26/2024] [Indexed: 04/04/2024]  Open
3
Surrett ED, Guckes KR, Cousins S, Ruskoski TB, Cecere AG, Ludvik DA, Okafor CD, Mandel MJ, Miyashiro TI. Two enhancer binding proteins activate σ54-dependent transcription of a quorum regulatory RNA in a bacterial symbiont. eLife 2023;12:e78544. [PMID: 37145113 PMCID: PMC10162802 DOI: 10.7554/elife.78544] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Accepted: 04/20/2023] [Indexed: 05/06/2023]  Open
4
Transition of Dephospho-DctD to the Transcriptionally Active State via Interaction with Dephospho-IIA Glc. mBio 2022;13:e0383921. [PMID: 35311533 PMCID: PMC9040800 DOI: 10.1128/mbio.03839-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
5
Fernández I, Cornaciu I, Carrica MDC, Uchikawa E, Hoffmann G, Sieira R, Márquez JA, Goldbaum FA. Three-Dimensional Structure of Full-Length NtrX, an Unusual Member of the NtrC Family of Response Regulators. J Mol Biol 2017;429:1192-1212. [PMID: 28088479 DOI: 10.1016/j.jmb.2016.12.022] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2016] [Revised: 12/21/2016] [Accepted: 12/29/2016] [Indexed: 12/15/2022]
6
Vidangos N, Maris AE, Young A, Hong E, Pelton JG, Batchelor JD, Wemmer DE. Structure, function, and tethering of DNA-binding domains in σ⁵⁴ transcriptional activators. Biopolymers 2013;99:1082-96. [PMID: 23818155 PMCID: PMC3932985 DOI: 10.1002/bip.22333] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2013] [Accepted: 06/18/2013] [Indexed: 11/07/2022]
7
Salavati A, Bushehri AAS, Taleei A, Hiraga S, Komatsu S. A comparative proteomic analysis of the early response to compatible symbiotic bacteria in the roots of a supernodulating soybean variety. J Proteomics 2012;75:819-32. [PMID: 22005398 DOI: 10.1016/j.jprot.2011.09.022] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2011] [Revised: 09/04/2011] [Accepted: 09/26/2011] [Indexed: 02/03/2023]
8
Karunakaran R, Ramachandran VK, Seaman JC, East AK, Mouhsine B, Mauchline TH, Prell J, Skeffington A, Poole PS. Transcriptomic analysis of Rhizobium leguminosarum biovar viciae in symbiosis with host plants Pisum sativum and Vicia cracca. J Bacteriol 2009;191:4002-14. [PMID: 19376875 PMCID: PMC2698398 DOI: 10.1128/jb.00165-09] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2009] [Accepted: 04/03/2009] [Indexed: 01/20/2023]  Open
9
Zhou YF, Nan B, Nan J, Ma Q, Panjikar S, Liang YH, Wang Y, Su XD. C4-dicarboxylates sensing mechanism revealed by the crystal structures of DctB sensor domain. J Mol Biol 2008;383:49-61. [PMID: 18725229 DOI: 10.1016/j.jmb.2008.08.010] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2008] [Revised: 08/02/2008] [Accepted: 08/06/2008] [Indexed: 11/19/2022]
10
Nan B, Zhou Y, Liang YH, Wen J, Ma Q, Zhang S, Wang Y, Su XD. Purification and preliminary X-ray crystallographic analysis of the ligand-binding domain of Sinorhizobium meliloti DctB. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2006;1764:839-41. [PMID: 16332458 DOI: 10.1016/j.bbapap.2005.10.023] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2005] [Revised: 10/06/2005] [Accepted: 10/06/2005] [Indexed: 11/21/2022]
11
Doucleff M, Chen B, Maris AE, Wemmer DE, Kondrashkina E, Nixon BT. Negative Regulation of AAA+ ATPase Assembly by Two Component Receiver Domains: A Transcription Activation Mechanism that is Conserved in Mesophilic and Extremely Hyperthermophilic Bacteria. J Mol Biol 2005;353:242-55. [PMID: 16169010 DOI: 10.1016/j.jmb.2005.08.003] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2005] [Revised: 08/01/2005] [Accepted: 08/03/2005] [Indexed: 10/25/2022]
12
Yurgel SN, Kahn ML. Dicarboxylate transport by rhizobia. FEMS Microbiol Rev 2004;28:489-501. [PMID: 15374663 DOI: 10.1016/j.femsre.2004.04.002] [Citation(s) in RCA: 95] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2003] [Revised: 01/03/2004] [Accepted: 04/04/2004] [Indexed: 11/27/2022]  Open
13
Wang YK, Park S, Nixon BT, Hoover TR. Nucleotide-dependent conformational changes in the sigma54-dependent activator DctD. J Bacteriol 2003;185:6215-9. [PMID: 14526036 PMCID: PMC225027 DOI: 10.1128/jb.185.20.6215-6219.2003] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
14
Park S, Meyer M, Jones AD, Yennawar HP, Yennawar NH, Nixon BT. Two-component signaling in the AAA + ATPase DctD: binding Mg2+ and BeF3- selects between alternate dimeric states of the receiver domain. FASEB J 2002;16:1964-6. [PMID: 12368235 DOI: 10.1096/fj.02-0395fje] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
15
Park S, Zhang H, Jones AD, Nixon BT. Biochemical evidence for multiple dimeric states of the Sinorhizobium meliloti DctD receiver domain. Biochemistry 2002;41:10934-41. [PMID: 12206664 DOI: 10.1021/bi0260031] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
16
Tropel D, van der Meer JR. Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters. J Bacteriol 2002;184:2914-24. [PMID: 12003931 PMCID: PMC135056 DOI: 10.1128/jb.184.11.2914-2924.2002] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
17
Xu H, Hoover TR. Transcriptional regulation at a distance in bacteria. Curr Opin Microbiol 2001;4:138-44. [PMID: 11282468 DOI: 10.1016/s1369-5274(00)00179-x] [Citation(s) in RCA: 95] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
18
Poole P, Allaway D. Carbon and nitrogen metabolism in Rhizobium. Adv Microb Physiol 2001;43:117-63. [PMID: 10907556 DOI: 10.1016/s0065-2911(00)43004-3] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
19
Sojda J, Gu B, Lee J, Hoover TR, Nixon BT. A rhizobial homolog of IHF stimulates transcription of dctA in Rhizobium leguminosarum but not in Sinorhizobium meliloti. Gene 1999;238:489-500. [PMID: 10570977 DOI: 10.1016/s0378-1119(99)00366-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
20
Reid CJ, Poole PS. Roles of DctA and DctB in signal detection by the dicarboxylic acid transport system of Rhizobium leguminosarum. J Bacteriol 1998;180:2660-9. [PMID: 9573150 PMCID: PMC107217 DOI: 10.1128/jb.180.10.2660-2669.1998] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
21
Gao Y, Wang YK, Hoover TR. Mutational analysis of the phosphate-binding loop of Rhizobium meliloti DctD, a sigma54-dependent activator. J Bacteriol 1998;180:2792-5. [PMID: 9573172 PMCID: PMC107239 DOI: 10.1128/jb.180.10.2792-2795.1998] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
22
Wang YP, Kolb A, Buck M, Wen J, O'Gara F, Buc H. CRP interacts with promoter-bound sigma54 RNA polymerase and blocks transcriptional activation of the dctA promoter. EMBO J 1998;17:786-96. [PMID: 9451003 PMCID: PMC1170427 DOI: 10.1093/emboj/17.3.786] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
23
Wang YK, Hoover TR. Alterations within the activation domain of the sigma 54-dependent activator DctD that prevent transcriptional activation. J Bacteriol 1997;179:5812-9. [PMID: 9294439 PMCID: PMC179471 DOI: 10.1128/jb.179.18.5812-5819.1997] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
24
Petri V, Brenowitz M. Quantitative nucleic acids footprinting: thermodynamic and kinetic approaches. Curr Opin Biotechnol 1997;8:36-44. [PMID: 9013649 DOI: 10.1016/s0958-1669(97)80155-3] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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