Effect of forage: concentrate ratio on ruminal metabolism and duodenal flow of fatty acids in beef steers

Predicting ruminally undegraded and microbial protein flows from the rumen

The objectives of the present work were (1) to identify the cause of the linear bias in predictions of rumen-undegradable protein (RUP) content of feeds, and devise methods to remove the bias from prediction equations, and (2) to further explore the impact of rumen-degradable protein (RDP) on microbial N (MiN) outflow from the rumen. The kinetic model used by NRC (2001), which is based on protein fractionation and rates of degradation (Kd) and passage (Kp), displays considerable slope bias (-0.30 kg/kg), indicating parameter or structural problems. Regressing Kp by feed class and a static adjustment factor for the in situ-derived Kd on observed RUP flows completely resolved the slope bias problem, and the model performed significantly better than models using unadjusted Kd and marker-based Kp. The Kd adjustment was 3.82%/h, which represents approximately a 50% increase in rates of degradation over the in situ values, indicating that in situ analyses severely underestimate true rates of protein degradation. The Kp for concentrate-derived protein was 5.83%/h, which was slightly less than the marker-predicted rate of 6.69%/h. However, the derived forage protein rate was 0.49%/h, which was considerably less than the marker-based rate of 5.07%/h. Compartmental analysis of data from a single study corroborated the regression analysis, indicating that a 25% reduction in the overall passage rate and an 87% increase in the rate of degradation were required to align ruminal N pool sizes and the extent of protein degradation with the observed data. Therefore, one must conclude that both the in situ-derived degradation rates and the marker-based particle passage rates are biased relative to protein passage and cannot be used directly to predict RUP outflow from the rumen. The effects of RDP supply on microbial nitrogen (MiN) flow were apparent when intakes of individual nutrients were offered but not when DM intake and individual nutrient concentrations were offered, due to collinearity problems. Microbial N flow from the rumen was found to be linearly related to ruminally degraded starch, ruminally degraded neutral detergent fiber (NDF), RDP, and forage NDF intakes; and quadratically related to residual OM intake. More complicated models containing 2- and 3-way interactions among nutrients were also supported by the data. Independent MiN responses to RDP, ruminally degraded starch, and ruminally degraded NDF aligned with the expected responses to each of those nutrients. Nonlinear representations of MiN were found to be inferior to the linear models. Despite using unbiased predictions of RUP and MiN as drivers of AA flows, predictions of Arg, His, Ile, and Lys flow exhibited linear slope bias relative to the observed data, indicating that representations of the AA composition of the proteins may be biased or the observed data are biased. This is an improvement over the NRC (2001) predictions, where bias adjustments were required for all of the essential AA. Despite the bias for 4 AA flows, the revised prediction system was a substantial improvement over the prior work.

Detecting selection signatures in three Iranian sheep breeds

The objective of genome mapping is to achieve valuable insight into the connection between gene variants (genotype) and observed traits (phenotype). Part of that objective is to understand the selective forces that have operated on a population. Finding links between genotype-phenotype changes makes it possible to identify selective sweeps by patterns of genetic variation and linkage disequilibrium. Based on Illumina 50KSNP chip data, two approaches, XP-EHH (cross-population extend haplotype homozygosity) and F_ST (fixation index), were carried out in this research to identify selective sweeps in the genome of three Iranian local sheep breeds: Baluchi (n = 86), Lori-Bakhtiari (n = 45) and Zel (n = 45). Using both methods, 93 candidate genomic regions were identified as harboring putative selective sweeps. Bioinformatics analysis of the genomic regions showed that signatures of selection related to multiple candidate genes, such as HOXB9, HOXB13, ACAN, NPR2, TRIL, AOX1, CSF2, GHR, TNS2, SPAG8, HINT2, ALS2, AAAS, RARG, SYCP2, CAV1, PPP1R3D, PLA2G7, TTLL7 and C20orf10, that play a role in skeletal system and tail, sugar and energy metabolisms, growth, reproduction, immune and nervous system traits. Our findings indicated diverse genomic selection during the domestication of Iranian sheep breeds.

Effect of banana flower powder on rumen fermentation, synthesis of microbial protein and nutrient digestibility in swamp buffaloes

Replacement of chemical compounds by dietary sources as rumen enhancers have been of great interest and concern by researchers. Four, rumen-fistulated swamp buffalo bulls with average liveweight of 365 ± 15.0 kg were randomly assigned to treatments, to investigate the impact of banana flower powder (BAFLOP) as a rumen modifier on pH, rumen fermentation, nutrient digestibility, microbial protein synthesis and volatile fatty acids. All buffaloes were allotted according to a 4 × 4 Latin square design. Dietary supplementation treatments were as follows: 2 g concentrate/kg bodyweight (BW; T1), 15 g concentrate/kg BW (T2), 15 g concentrate/kg BW plus BAFLOP 300 g/head.day (T3) and 15 g concentrate/kg BW plus BAFLOP 600 g/head.day (T4). Untreated rice straw was fed ad libitum. The findings showed that total feed intake was increased in buffaloes fed a diet supplemented with concentrate at 2 g/kg BW, while rice straw intake was reduced. Nutrient digestibility was increased by BAFLOP supplementation at both levels (T3 and T4; P < 0.05). Ruminal pH dropped (5.9) in buffaloes fed with concentrate at 15 g/kg BW, while buffaloes with BAFLOP supplementation could maintain ruminal pH when fed with high-concentrate diet. Ruminal ammonia-nitrogen increased in the buffaloes fed concentrate at 15 g/kg BW, especially with BAFLOP supplementation. Feeding high-concentrate diet increased the concentrations of ruminal total volatile fatty acids and propionic acid (C3), while the concentration of acetic acid and the acetic acid:C3 ratio and methane production were subsequently reduced (P < 0.05). In addition, efficiency of microbial protein synthesis was increased by the BAFLOP feeding (P < 0.05). In the present study, using BAFLOP as a dietary rumen enhancer at 300–600 g/head.day resulted in an increased rumen pH, C3 concentration, nutrient digestibility and microbial protein synthesis, while mitigating ruminal methane production. Higher nutrient digestibility and lower ruminal methane production, more dietary energy and production efficiency are expected.

Characterization of genes for beef marbling based on applying gene coexpression network

Marbling is an important trait in characterization beef quality and a major factor for determining the price of beef in the Korean beef market. In particular, marbling is a complex trait and needs a system-level approach for identifying candidate genes related to the trait. To find the candidate gene associated with marbling, we used a weighted gene coexpression network analysis from the expression value of bovine genes. Hub genes were identified; they were topologically centered with large degree and BC values in the global network. We performed gene expression analysis to detect candidate genes in M. longissimus with divergent marbling phenotype (marbling scores 2 to 7) using qRT-PCR. The results demonstrate that transmembrane protein 60 (TMEM60) and dihydropyrimidine dehydrogenase (DPYD) are associated with increasing marbling fat. We suggest that the network-based approach in livestock may be an important method for analyzing the complex effects of candidate genes associated with complex traits like marbling or tenderness.

Association of an ACSL1 gene variant with polyunsaturated fatty acids in bovine skeletal muscle

Background

The intramuscular fat deposition and the fatty acid profiles of beef affect meat quality. High proportions of unsaturated fatty acids are related to beef flavor and are beneficial for the nutritional value of meat. Moreover, a variety of clinical and epidemiologic studies showed that particularly long-chain omega-3 fatty acids from animal sources have a positive impact on human health and disease.

Results

To screen for genetic factors affecting fatty acid profiles in beef, we initially performed a microsatellite-based genome scan in a F₂ Charolais × German Holstein resource population and identified a quantitative trait locus (QTL) for fatty acid composition in a region on bovine chromosome 27 where previously QTL affecting marbling score had been detected in beef cattle populations. The long-chain acyl-CoA synthetase 1 (ACSL1) gene was identified as the most plausible functional and positional candidate gene in the QTL interval due to its direct impact on fatty acid metabolism and its position in the QTL interval. ACSL1 is necessary for synthesis of long-chain acyl-CoA esters, fatty acid degradation and phospholipid remodeling. We validated the genomic annotation of the bovine ACSL1 gene by in silico comparative sequence analysis and experimental verification. Re-sequencing of the complete coding, exon-flanking intronic sequences, 3' untranslated region (3'UTR) and partial promoter region of the ACSL1 gene revealed three synonymous mutations in exons 6, 7, and 20, six noncoding intronic gene variants, six polymorphisms in the promoter region, and four variants in the 3' UTR region. The association analysis identified the gene variant in intron 5 of the ACSL1 gene (c.481-233A>G) to be significantly associated with the relative content of distinct fractions and ratios of fatty acids (e.g., n-3 fatty acids, polyunsaturated, n-3 long-chain polyunsaturated fatty acids, trans vaccenic acid) in skeletal muscle. A tentative association of the ACSL1 gene variant with intramuscular fat content indicated that an indirect effect on fatty acid composition via modulation of total fat content of skeletal muscle cannot be excluded.

Conclusions

The initial QTL analysis suggested the ACSL1 gene as a positional and functional candidate gene for fatty acid composition in bovine skeletal muscle. The findings of subsequent association analyses indicate that ACSL1 or a separate gene in close proximity might play a functional role in mediating the lipid composition of beef.

Inclusion of flaxseed in hay- and barley silage diets increases alpha-linolenic acid in cow plasma independent of forage type

Feeding flaxseed to cattle may be a means of increasing omega-3 fatty acid levels in ruminant products, but possible interactions with conserved forages have not been investigated. Twelve Holstein cows were used in a replicated 4 × 4 Latin Square experiment. Cows were fed one of four 50:50 forage:concentrate diets (DM basis): hay (hay control, HC), hay plus 15% ground flaxseed (hay-flaxseed, HF), barley silage (silage control, SC), and barley silage plus 15% ground flaxseed (silage-flaxseed, SF). Plasma concentrations of alpha-linolenic acid (ALA) did not differ between SC and HC diets. Flaxseed increased ALA (P < 0.05), but levels were not influenced by forage type. Flaxseed slightly increased 18:2n-6 (P < 0.05) and some n-6 and n-3 elongation and desaturation products, particularly arachidonic acid (ARA) and eicosapentaenoic acid (EPA). Flaxseed also increased C18:0 (P < 0.05) with this increase being greater (P < 0.01) for cows fed SF than HF. Feeding flaxseed also increased plasma C18:1-trans isomers (P < 0.01), predominantly vaccenic acid (VAA, 18:1-t11), with this increase being greater (P < 0.05) in cows fed HF than SF. Although conjugated linoleic acid (CLA) was increased (P < 0.001) with flaxseed it was not influenced by forage type (P = 0.06). Overall, feeding flaxseed increased plasma ALA, EPA, ARA and CLA independently of forage type. Feeding flaxseed with silage, however, resulted in more 18:0, while feeding flaxseed with hay resulted in greater accumulations of plasma 18:1-trans isomers mainly in the form of VAA.