1
|
Bernstein JGW, Jensen KK, Stakhovskaya OA, Noble JH, Hoa M, Kim HJ, Shih R, Kolberg E, Cleary M, Goupell MJ. Interaural Place-of-Stimulation Mismatch Estimates Using CT Scans and Binaural Perception, But Not Pitch, Are Consistent in Cochlear-Implant Users. J Neurosci 2021; 41:10161-10178. [PMID: 34725189 PMCID: PMC8660045 DOI: 10.1523/jneurosci.0359-21.2021] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 08/23/2021] [Accepted: 10/01/2021] [Indexed: 11/21/2022] Open
Abstract
Bilateral cochlear implants (BI-CIs) or a CI for single-sided deafness (SSD-CI; one normally functioning acoustic ear) can partially restore spatial-hearing abilities, including sound localization and speech understanding in noise. For these populations, however, interaural place-of-stimulation mismatch can occur and thus diminish binaural sensitivity that relies on interaurally frequency-matched neurons. This study examined whether plasticity-reorganization of central neural pathways over time-can compensate for peripheral interaural place mismatch. We hypothesized differential plasticity across two systems: none for binaural processing but adaptation for pitch perception toward frequencies delivered by the specific electrodes. Interaural place mismatch was evaluated in 19 BI-CI and 23 SSD-CI human subjects (both sexes) using binaural processing (interaural-time-difference discrimination with simultaneous bilateral stimulation), pitch perception (pitch ranking for single electrodes or acoustic tones with sequential bilateral stimulation), and physical electrode-location estimates from computed-tomography (CT) scans. On average, CT scans revealed relatively little BI-CI interaural place mismatch (26° insertion-angle mismatch) but a relatively large SSD-CI mismatch, particularly at low frequencies (166° for an electrode tuned to 300 Hz, decreasing to 14° at 7000 Hz). For BI-CI subjects, the three metrics were in agreement because there was little mismatch. For SSD-CI subjects, binaural and CT measurements were in agreement, suggesting little binaural-system plasticity induced by mismatch. The pitch measurements disagreed with binaural and CT measurements, suggesting place-pitch plasticity or a procedural bias. These results suggest that reducing interaural place mismatch and potentially improving binaural processing by reprogramming the CI frequency allocation would be better done using CT-scan than pitch information.SIGNIFICANCE STATEMENT Electrode-array placement for cochlear implants (bionic prostheses that partially restore hearing) does not explicitly align neural representations of frequency information. The resulting interaural place-of-stimulation mismatch can diminish spatial-hearing abilities. In this study, adults with two cochlear implants showed reasonable interaural alignment, whereas those with one cochlear implant but normal hearing in the other ear often showed mismatch. In cases of mismatch, binaural sensitivity was best when the same cochlear locations were stimulated in both ears, suggesting that binaural brainstem pathways do not experience plasticity to compensate for mismatch. In contrast, interaurally pitch-matched electrodes deviated from cochlear-location estimates and did not optimize binaural sensitivity. Clinical correction of interaural place mismatch using binaural or computed-tomography (but not pitch) information may improve spatial-hearing benefits.
Collapse
Affiliation(s)
- Joshua G W Bernstein
- National Military Audiology and Speech Pathology Center, Walter Reed National Military Medical Center, Bethesda, Maryland 20889
| | - Kenneth K Jensen
- National Military Audiology and Speech Pathology Center, Walter Reed National Military Medical Center, Bethesda, Maryland 20889
| | - Olga A Stakhovskaya
- Department of Hearing and Speech Sciences, University of Maryland, College Park, Maryland 20742
| | - Jack H Noble
- Department of Electrical Engineering and Computer Science, Vanderbilt University, Nashville, Tennessee 37232
| | - Michael Hoa
- Department of Otolaryngology Head and Neck Surgery, Georgetown University Medical Center, Washington, DC 20057
| | - H Jeffery Kim
- Department of Otolaryngology Head and Neck Surgery, Georgetown University Medical Center, Washington, DC 20057
| | - Robert Shih
- Department of Radiology, Walter Reed National Military Medical Center, Bethesda, Maryland 20889
| | - Elizabeth Kolberg
- Department of Hearing and Speech Sciences, University of Maryland, College Park, Maryland 20742
| | - Miranda Cleary
- Department of Hearing and Speech Sciences, University of Maryland, College Park, Maryland 20742
| | - Matthew J Goupell
- Department of Hearing and Speech Sciences, University of Maryland, College Park, Maryland 20742
| |
Collapse
|
2
|
Banko A, Miljanovic D, Lazarevic I, Cirkovic A. A Systematic Review of Epstein-Barr Virus Latent Membrane Protein 1 (LMP1) Gene Variants in Nasopharyngeal Carcinoma. Pathogens 2021; 10:1057. [PMID: 34451521 PMCID: PMC8401687 DOI: 10.3390/pathogens10081057] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Revised: 07/21/2021] [Accepted: 07/26/2021] [Indexed: 01/14/2023] Open
Abstract
Nasopharyngeal carcinoma (NPC) is an aggressive tumor with a complex etiology. Although Epstein-Barr virus (EBV) infection is known environmental factor for NPC development, the degree to which EBV naturally infects nasopharyngeal epithelium and the moment when and why the virus actively begins to affect cell transformation remains questionable. The aim of this study was to explore the association between LMP1 gene variability and potential contribution to NPC development. A systematic review was performed through searches of PubMed, Web of Science (WoS) and SCOPUS electronic databases. Additionally, meta-analysis of the difference in the frequency of seven LMP1 gene variants in NPC and control individuals was accomplished. The results from this study give a proof of concept for the association between 30 bp deletion (OR = 3.53, 95% CI = 1.48-8.43) and Xhol loss (OR = 14.17, 95% CI = 4.99-40.20) and NPC susceptibility when comparing biopsies from NPC and healthy individuals. Otherwise, 30 bp deletion from NPC biopsies could not distinguish NPC from EBV-associated non-NPC tumors (OR = 1.74, 95% CI = 0.81-3.75). However, B95-8, China1 and North Carolina variants were uncommon for NPC individuals. Much more efforts remains to be done to verify the biological significance of the differences observed, define so-called "high-risk" EBV variants and make it available for clinical application.
Collapse
Affiliation(s)
- Ana Banko
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Belgrade, 11000 Belgrade, Serbia; (D.M.); (I.L.)
| | - Danijela Miljanovic
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Belgrade, 11000 Belgrade, Serbia; (D.M.); (I.L.)
| | - Ivana Lazarevic
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Belgrade, 11000 Belgrade, Serbia; (D.M.); (I.L.)
| | - Andja Cirkovic
- Institute for Medical Statistics and Informatics, Faculty of Medicine, University of Belgrade, 11000 Belgrade, Serbia;
| |
Collapse
|
3
|
Wess JM, Spencer NJ, Bernstein JGW. Counting or discriminating the number of voices to assess binaural fusion with single-sided vocoders. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2020; 147:446. [PMID: 32006956 PMCID: PMC7043860 DOI: 10.1121/10.0000511] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Revised: 11/27/2019] [Accepted: 12/06/2019] [Indexed: 06/10/2023]
Abstract
For single-sided deafness cochlear-implant (SSD-CI) listeners, different peripheral representations for electric versus acoustic stimulation, combined with interaural frequency mismatch, might limit the ability to perceive bilaterally presented speech as a single voice. The assessment of binaural fusion often relies on subjective report, which requires listeners to have some understanding of the perceptual phenomenon of object formation. Two experiments explored whether binaural fusion could instead be assessed using judgments of the number of voices in a mixture. In an SSD-CI simulation, normal-hearing listeners were presented with one or two "diotic" voices (i.e., unprocessed in one ear and noise-vocoded in the other) in a mixture with additional monaural voices. In experiment 1, listeners reported how many voices they heard. Listeners generally counted the diotic speech as two separate voices, regardless of interaural frequency mismatch. In experiment 2, listeners identified which of two mixtures contained diotic speech. Listeners performed significantly better with interaurally frequency-matched than with frequency-mismatched stimuli. These contrasting results suggest that listeners experienced partial fusion: not enough to count the diotic speech as one voice, but enough to detect its presence. The diotic-speech detection task (experiment 2) might provide a tool to evaluate fusion and optimize frequency mapping for SSD-CI patients.
Collapse
Affiliation(s)
- Jessica M Wess
- National Military Audiology and Speech Pathology Center, Walter Reed National Military Medical Center, Bethesda, Maryland 20889, USA
| | - Nathaniel J Spencer
- Air Force Research Laboratory, Wright Patterson Air Force Base, Ohio 45433, USA
| | - Joshua G W Bernstein
- National Military Audiology and Speech Pathology Center, Walter Reed National Military Medical Center, Bethesda, Maryland 20889, USA
| |
Collapse
|
4
|
Neves M, Marinho-Dias J, Ribeiro J, Sousa H. Epstein-Barr virus strains and variations: Geographic or disease-specific variants? J Med Virol 2016; 89:373-387. [PMID: 27430663 DOI: 10.1002/jmv.24633] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/17/2016] [Indexed: 12/24/2022]
Abstract
The Epstein-Barr Virus (EBV) is associated with the development of several diseases, including infectious mononucleosis (IM), Burkitt's Lymphoma (BL), Nasopharyngeal Carcinoma, and other neoplasias. The publication of EBV genome 1984 led to several studies regarding the identification of different viral strains. Currently, EBV is divided into EBV type 1 (B95-8 strain) and EBV type 2 (AG876 strain), also known as type A and type B, which have been distinguished based upon genetic differences in the Epstein-Barr nuclear antigens (EBNAs) sequence. Several other EBV strains have been described in the past 10 years considering variations on EBV genome, and many have attempted to clarify if these variations are ethnic or geographically correlated, or if they are disease related. Indeed, there is an increasing interest to describe possible specific disease associations, with emphasis on different malignancies. These studies aim to clarify if these variations are ethnic or geographically correlated, or if they are disease related, thus being important to characterize the epidemiologic genetic distribution of EBV strains on our population. Here, we review the current knowledge on the different EBV strains and variants and its association with different diseases. J. Med. Virol. 89:373-387, 2017. © 2016 Wiley Periodicals, Inc.
Collapse
Affiliation(s)
- Marco Neves
- Molecular Oncology and Viral Pathology Group, Research Centre (CI-IPOP), Porto, Portugal.,Faculty of Medicine of University of Porto (FMUP), Porto, Portugal
| | - Joana Marinho-Dias
- Molecular Oncology and Viral Pathology Group, Research Centre (CI-IPOP), Porto, Portugal.,Virology Service, Portuguese Oncology Institute of Porto, Porto, Portugal.,Abel Salazar Institute for the Biomedical Sciences of University of Porto (ICBAS-UP), Porto, Portugal
| | - Joana Ribeiro
- Molecular Oncology and Viral Pathology Group, Research Centre (CI-IPOP), Porto, Portugal.,Faculty of Medicine of University of Porto (FMUP), Porto, Portugal.,Virology Service, Portuguese Oncology Institute of Porto, Porto, Portugal
| | - Hugo Sousa
- Molecular Oncology and Viral Pathology Group, Research Centre (CI-IPOP), Porto, Portugal.,Virology Service, Portuguese Oncology Institute of Porto, Porto, Portugal
| |
Collapse
|
5
|
Neves M, Marinho-Dias J, Ribeiro J, Esteves M, Maltez E, Baldaque I, Breda E, Monteiro E, Medeiros R, Sousa H. Characterization of Epstein-Barr virus strains and LMP1-deletion variants in Portugal. J Med Virol 2015; 87:1382-8. [PMID: 25879824 DOI: 10.1002/jmv.24190] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/08/2015] [Indexed: 11/08/2022]
Abstract
Variations in the genome sequence of Epstein-Barr Virus (EBV) are thought to lead to differential interaction with host cells, immune evasion, and transformation. The discussion regarding EBV strains as having a geographic or disease-association has been increasing and the majority of studies are performed in Asiatic populations. We developed a case-control study with 139 individuals, including 96 subjects with different malignancies and 43 healthy individuals, from the North region of Portugal. We have used PCR protocols for the characterization of EBV strains (type A or B) based on EBNA3C genome variation and for the LMP1 30bp-deletion variants (wt-LMP1 or del-LMP1). Our study showed that type A is the most prevalent in our population (100% of healthy controls, 96.9% of aHSCT patients, 90.8% of HNSCC patients, and 94.9% of NPC patients) and that type B was significantly associated with NPC (P = 0.019; RR = 8.90). Regarding the LMP1 30bp-deletion, we found a similar distribution of both wt- and del-LMP1 variants in controls and dispare results in cases: del-LMP1 was more frequent in aHSCT and HNSCC patients (64.7% and 63.2%, respectively) and wt-LMP1 in NPC patients (100%). In fact, the study reveals that wt-LPM1 was significantly associated with NPC (P < 0.001; RR = 18.4). Hence, our study showed that EBV type B and wt-LMP1 variant seem to be associated with NPC in our population, with a clear disease-association for wt-LMP1. These results contribute for the knowledge of EBV genetic diversity among Caucasian populations.
Collapse
Affiliation(s)
- Marco Neves
- Molecular Oncology and Viral Pathology Group, Portuguese Institute of Oncology of Porto, Porto, Portugal.,Department of Biology, University of Aveiro, Campus de Santiago, Aveiro, Portugal
| | - Joana Marinho-Dias
- Molecular Oncology and Viral Pathology Group, Portuguese Institute of Oncology of Porto, Porto, Portugal.,Virology Service, Portuguese Institute of Oncology of Porto, Porto, Portugal
| | - Joana Ribeiro
- Molecular Oncology and Viral Pathology Group, Portuguese Institute of Oncology of Porto, Porto, Portugal.,Virology Service, Portuguese Institute of Oncology of Porto, Porto, Portugal.,Faculty of Medicine of University of Porto, Porto, Portugal
| | - Marlene Esteves
- Molecular Oncology and Viral Pathology Group, Portuguese Institute of Oncology of Porto, Porto, Portugal
| | - Elsa Maltez
- Molecular Oncology and Viral Pathology Group, Portuguese Institute of Oncology of Porto, Porto, Portugal
| | - Inês Baldaque
- Virology Service, Portuguese Institute of Oncology of Porto, Porto, Portugal
| | - Eduardo Breda
- Molecular Oncology and Viral Pathology Group, Portuguese Institute of Oncology of Porto, Porto, Portugal.,Otorhinolaryngology Department, Portuguese Institute of Oncology of Porto, Porto, Portugal
| | - Eurico Monteiro
- Molecular Oncology and Viral Pathology Group, Portuguese Institute of Oncology of Porto, Porto, Portugal.,Otorhinolaryngology Department, Portuguese Institute of Oncology of Porto, Porto, Portugal
| | - Rui Medeiros
- Molecular Oncology and Viral Pathology Group, Portuguese Institute of Oncology of Porto, Porto, Portugal.,Virology Service, Portuguese Institute of Oncology of Porto, Porto, Portugal.,Abel Salazar Institute for the Biomedical Sciences (ICBAS), University of Porto, Porto, Portugal.,Research Department, Portuguese League Against Cancer (Liga Portuguesa Contra o Cancro - Núcleo Regional do Norte), Porto, Portugal
| | - Hugo Sousa
- Molecular Oncology and Viral Pathology Group, Portuguese Institute of Oncology of Porto, Porto, Portugal.,Virology Service, Portuguese Institute of Oncology of Porto, Porto, Portugal.,Faculty of Medicine of University of Porto, Porto, Portugal
| |
Collapse
|
6
|
da Costa VG, Marques-Silva AC, Moreli ML. The Epstein-Barr virus latent membrane protein-1 (LMP1) 30-bp deletion and XhoI-polymorphism in nasopharyngeal carcinoma: a meta-analysis of observational studies. Syst Rev 2015; 4:46. [PMID: 25927427 PMCID: PMC4404015 DOI: 10.1186/s13643-015-0037-z] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/03/2015] [Accepted: 03/26/2015] [Indexed: 12/15/2022] Open
Abstract
BACKGROUND Epstein-Barr virus (EBV) is considered to be closely associated with nasopharyngeal carcinoma (NPC), in which EBV-encoded latent membrane protein 1 (LMP1) was found to have an oncogenic role. However, the results published on the LMP1 polymorphism are inconsistent. In the present study, we performed a meta-analysis to determine the frequency of the associations and a more precise association between NPC and EBV LMP1 gene variants (30-bp deletion (del)/XhoI-loss). METHODS Eligible articles met the inclusion/exclusion criteria and were identified in the following electronic databases: PubMed, ScienceDirect, and SciELO. Consequently, the data of interest were extracted and plotted in a table to calculate the frequency and odds ratio (OR) of the outcomes of interest (30-bp del-LMP1/XhoI-loss) in patients with NPC. Study quality (Newcastle-Ottawa Scale (NOS)), publication bias, and heterogeneity were assessed. RESULTS Thirty-one observational studies were included with a total of 2,846 individuals (NPC, n = 1,855; control, n = 991). The risk of bias in relation to study quality evaluated by NOS was considered low. The pooled estimate of the frequency of 30-bp del-LMP1 and XhoI-loss in patients with NPC was 77% (95% confidence interval (CI): 72 to 82) and 82% (95% CI: 71 to 92), respectively. There was an association between 30-bp del-LMP1 and NPC susceptibility (OR = 2.86, 95% CI: 1.35 to 6.07, P = 0.00). Similarly, there was an association between XhoI-loss and NPC (OR = 8.5, 95% CI: 1.7 to 41, P = 0.00). However, when we analyze the co-existence of the 30-bp del-LMP1 and XhoI-loss in patients with NPC, there was no association (OR = 1.09, 95% CI: 0.06 to 18.79, P = 0.002). CONCLUSIONS Our results suggest an association between the 30-bp del-LMP1 and XhoI-loss with NPC susceptibility. However, our data should be interpreted with caution because the sample size was small, and there was heterogeneity between the studies. Thus, future studies are needed with adjusted estimates to simultaneously evaluate multiple factors involved in the development of NPC. SYSTEMATIC REVIEW REGISTRATION PROSPERO CRD42014013496 .
Collapse
Affiliation(s)
- Vivaldo G da Costa
- Post-Graduation Program in Applied Health Sciences, Federal University of Goiás, BR 364, Km 192, Industrial Park, Jataí, Brazil.
- Virology Laboratory, Federal University of Goiás, BR 364, Km 192, Industrial Park, Jataí, Brazil.
| | - Ariany C Marques-Silva
- Virology Laboratory, Federal University of Goiás, BR 364, Km 192, Industrial Park, Jataí, Brazil.
| | - Marcos L Moreli
- Post-Graduation Program in Applied Health Sciences, Federal University of Goiás, BR 364, Km 192, Industrial Park, Jataí, Brazil.
- Virology Laboratory, Federal University of Goiás, BR 364, Km 192, Industrial Park, Jataí, Brazil.
| |
Collapse
|
7
|
Grasmeder ML, Verschuur CA, Batty VB. Optimizing frequency-to-electrode allocation for individual cochlear implant users. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2014; 136:3313. [PMID: 25480076 DOI: 10.1121/1.4900831] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Individual adjustment of frequency-to-electrode assignment in cochlear implants (CIs) may potentially improve speech perception outcomes. Twelve adult CI users were recruited for an experiment, in which frequency maps were adjusted using insertion angles estimated from post-operative x rays; results were analyzed for ten participants with good quality x rays. The allocations were a mapping to the Greenwood function, a compressed map limited to the area containing spiral ganglion (SG) cells, a reduced frequency range map (RFR), and participants' clinical maps. A trial period of at least six weeks was given for the clinical, Greenwood, and SG maps although participants could return to their clinical map if they wished. Performance with the Greenwood map was poor for both sentence and vowel perception and correlated with insertion angle; performance with the SG map was poorer than for the clinical map. The RFR map was significantly better than the clinical map for three participants, for sentence perception, but worse for three others. Those with improved performance had relatively deep insertions and poor electrode discrimination ability for apical electrodes. The results suggest that CI performance could be improved by adjustment of the frequency allocation, based on a measure of insertion angle and/or electrode discrimination ability.
Collapse
Affiliation(s)
- Mary L Grasmeder
- Auditory Implant Service, Faculty of Engineering and the Environment, Building 19, University of Southampton, Southampton SO17 1BJ, United Kingdom
| | - Carl A Verschuur
- Auditory Implant Service, Faculty of Engineering and the Environment, Building 19, University of Southampton, Southampton SO17 1BJ, United Kingdom
| | - Vincent B Batty
- Wessex Neurological Centre, University Hospital Southampton NHS Foundation Trust, Tremona Road, Southampton SO16 6YD, United Kingdom
| |
Collapse
|
8
|
Gurtsevitch VE, Yakovleva LS, Shcherbak LN, Goncharova EV, Smirnova KV, Diduk SV, Kondratova VN, Maksimovich DM, Lichtenstein AV, Senyuta NB. Sequence variants of LMP1 oncogene in patients with oral cavity tumors associated and not associated with Epstein-Barr virus. Mol Biol 2013. [DOI: 10.1134/s002689331305004x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
9
|
Wohlford EM, Asito AS, Chelimo K, Sumba PO, Baresel PC, Oot RA, Moormann AM, Rochford R. Identification of a novel variant of LMP-1 of EBV in patients with endemic Burkitt lymphoma in western Kenya. Infect Agent Cancer 2013; 8:34. [PMID: 24016332 PMCID: PMC3847075 DOI: 10.1186/1750-9378-8-34] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2013] [Accepted: 05/09/2013] [Indexed: 12/24/2022] Open
Abstract
Background Epstein Barr virus (EBV) is a gammaherpesvirus that is associated with nasopharyngeal carcinoma (NPC) and endemic Burkitt lymphoma (eBL). EBV carries several latent genes that contribute to oncogenesis including the latent membrane protein 1 (LMP-1), a known oncogene and constitutively active CD40 homolog. Variation in the C terminal region of LMP-1 has been linked to NPC pathogenesis, but little is known regarding LMP-1 variation and eBL. Results In the present study, peripheral blood samples were obtained from 38 eBL patients and 22 healthy controls in western Kenya, where the disease is endemic. The LMP-1 C-terminal region from these samples was sequenced and analyzed. The frequency of a 30 base pair deletion of LMP-1 previously linked to NPC was not associated with eBL compared to healthy controls. However a novel LMP-1 variant was identified, called K for Kenya and for the G318K mutation that characterizes it. The K variant LMP-1 was found in 40.5% of eBL sequences and 25.0% of healthy controls. All K variant sequences contained mutations in both of the previously described minimal T cell epitopes in the C terminal end of LMP-1. These mutations occurred in the anchor residue at the C-terminal binding groove of both epitopes, a pocket necessary for MHC loading. Conclusions Overall, our results suggest that there is a novel K variant of LMP-1 in Kenya that may be associated with eBL. Further studies are necessary to determine the functional implications of the LMP-1 variant on early events in eBL genesis.
Collapse
Affiliation(s)
- Eric M Wohlford
- Center for Global Health and Translational Science, SUNY Upstate Medical University, Syracuse, NY 13210, USA.
| | | | | | | | | | | | | | | |
Collapse
|
10
|
Siciliano CM, Faulkner A, Rosen S, Mair K. Resistance to learning binaurally mismatched frequency-to-place maps: implications for bilateral stimulation with cochlear implants. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2010; 127:1645-60. [PMID: 20329863 DOI: 10.1121/1.3293002] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Simulations of monaural cochlear implants in normal hearing listeners have shown that the deleterious effects of upward spectral shifting on speech perception can be overcome with training. This study simulates bilateral stimulation with a unilateral spectral shift to investigate whether listeners can adapt to upward-shifted speech information presented together with contralateral unshifted information. A six-channel, dichotic, interleaved sine-carrier vocoder simulated a binaurally mismatched frequency-to-place map. Odd channels were presented to one ear with an upward frequency shift equivalent to 6 mm on the basilar membrane, while even channels were presented to the contralateral ear unshifted. In Experiment 1, listeners were trained for 5.3 h with either the binaurally mismatched processor or with just the shifted monaural bands. In Experiment 2, the duration of training was 10 h, and the trained condition alternated between those of Experiment 1. While listeners showed learning in both experiments, intelligibility with the binaurally mismatched processor never exceeded, intelligibility with just the three unshifted bands, suggesting that listeners did not benefit from combining the mismatched maps, even though there was clear scope to do so. Frequency-place map alignment may thus be of importance when optimizing bilateral devices of the type studied here.
Collapse
Affiliation(s)
- Catherine M Siciliano
- Speech, Hearing and Phonetic Sciences, Division of Psychology and Language Sciences, UCL, Chandler House, 2 Wakefield Street, London WC1N 1PF, United Kingdom.
| | | | | | | |
Collapse
|
11
|
Chang CM, Yu KJ, Mbulaiteye SM, Hildesheim A, Bhatia K. The extent of genetic diversity of Epstein-Barr virus and its geographic and disease patterns: a need for reappraisal. Virus Res 2009; 143:209-21. [PMID: 19596032 DOI: 10.1016/j.virusres.2009.07.005] [Citation(s) in RCA: 161] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2009] [Revised: 06/30/2009] [Accepted: 07/02/2009] [Indexed: 12/12/2022]
Abstract
Epstein-Barr virus (EBV) is a ubiquitous, gamma-1 lymphotrophic virus etiologically linked to nasopharyngeal carcinoma (NPC), endemic to Southern China, and Burkitt lymphoma (BL), endemic to equatorial Africa, both of which are rare elsewhere in the world. Why EBV is associated with different malignancies in different geographic regions remains puzzling and may be related to EBV genotypic variability through specific disease and geographic associations. We review the literature on sequence variation in EBV genes, focusing on LMP-1, EBNA-1, and BZLF-1 and their distribution by geography and disease. Given the limitations of current studies, definitive conclusions regarding the link between EBV genotypes, disease and geography are not possible. We suggest that the true extent of EBV diversity is likely to be greater than is currently recognized. Additional studies conducted in carefully selected populations, that are sufficiently powered to provide robust estimates, and that utilize testing approaches that permit full characterization of viral diversity are needed to further our understanding of patterns of EBV genetic variation and their association with malignancies in different regions.
Collapse
Affiliation(s)
- Cindy M Chang
- Infections and Immunoepidemiology Branch, Division of Cancer Epidemiology & Genetics, National Cancer Institute, National Institutes of Health, 6120 Executive Blvd., EPS 7074, Rockville, MD 20892, USA.
| | | | | | | | | |
Collapse
|
12
|
Schvartz KC, Chatterjee M, Gordon-Salant S. Recognition of spectrally degraded phonemes by younger, middle-aged, and older normal-hearing listeners. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2008; 124:3972-88. [PMID: 19206821 PMCID: PMC2662854 DOI: 10.1121/1.2997434] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
The effects of spectral degradation on vowel and consonant recognition abilities were measured in young, middle-aged, and older normal-hearing (NH) listeners. Noise-band vocoding techniques were used to manipulate the number of spectral channels and frequency-to-place alignment, thereby simulating cochlear implant (CI) processing. A brief cognitive test battery was also administered. The performance of younger NH listeners exceeded that of the middle-aged and older listeners, when stimuli were severely distorted (spectrally shifted); the older listeners performed only slightly worse than the middle-aged listeners. Significant intragroup variability was present in the middle-aged and older groups. A hierarchical multiple-regression analysis including data from all three age groups suggested that age was the primary factor related to shifted vowel recognition performance, but verbal memory abilities also contributed significantly to performance. A second regression analysis (within the middle-aged and older groups alone) revealed that verbal memory and speed of processing abilities were better predictors of performance than age alone. The overall results from the current investigation suggested that both chronological age and cognitive capacities contributed to the ability to recognize spectrally degraded phonemes. Such findings have important implications for the counseling and rehabilitation of adult CI recipients.
Collapse
Affiliation(s)
- Kara C Schvartz
- Department of Hearing and Speech Sciences, University of Maryland, College Park, Maryland 20742, USA.
| | | | | |
Collapse
|
13
|
See HS, Yap YY, Yip WK, Seow HF. Epstein-Barr virus latent membrane protein-1 (LMP-1) 30-bp deletion and Xho I-loss is associated with type III nasopharyngeal carcinoma in Malaysia. World J Surg Oncol 2008; 6:18. [PMID: 18275617 PMCID: PMC2265716 DOI: 10.1186/1477-7819-6-18] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2007] [Accepted: 02/15/2008] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Nasopharyngeal carcinoma (NPC) is a human epithelial tumour with high prevalence amongst Chinese in Southern China and South East Asia and is associated with the Epstein-Barr virus (EBV). The viral genome harbours an oncogene, namely, the latent membrane protein 1 (LMP1) gene and known variants such as the 30-bp deletion and loss of XhoI restriction site have been found. Less is known about the relationship between these variants and the population characteristics and histological type. METHODS In this study, the EBV LMP1 gene variants from 42 NPC and 10 non-malignant archived formalin fixed, paraffin-embedded tissues, as well as plasma from another 35 patients with nasopharyngeal carcinoma were determined by using Polymerase Chain Reaction (PCR). Statistical analysis was performed by using SPSS programme. RESULTS LMP1 30-bp deletion was detected in 19/34 (55.9%) of NPC tissues, 7/29 (24.1%) of plasma but absent in non-malignant tissues (8/8). Coexistence of variants with and without 30bp deletion was found only in 5/29 (17.2%) plasma samples but not in NPC tissues. The loss of XhoI restriction site in LMP1 gene was found in 34/39 (87.2%) of the NPC tissues and 11/30 (36.7%) of plasma samples. None of the non-malignant nasopharyngeal tissues (8/8) harbour XhoI-loss variants. LMP1 30-bp deletion was detected in 16/18 Chinese versus 3/15 Malays and 13/16 type III (undifferentiated carcinoma) versus 1/6 type I (keratinizing squamous cell carcinoma). XhoI-loss was found in 19/19 Chinese versus 14/19 Malays and 18/18 type III (undifferentiated) versus 2/5 type I (keratinizing squamous cell carcinoma). Statistical analysis showed that these variants were associated with ethnic race (30-bp deletion, p < 0.05; XhoI-loss, p = 0.046) and histological type of NPC (30-bp deletion, p = 0.011; XhoI-loss, p = 0.006). Nineteen out of 32 NPC tissues (19/32; 59.4%) and 6/24 (25%) of plasma samples showed the coexistence of both the 30-bp deletion and the loss of XhoI restriction site. A significant relationship was found with the Chinese race but not histological type. CONCLUSION The incidence rate of 56% for LMP1 30-bp deletion was lower compared to previously reported rates of 75-100% in NPC tissues. Coexistence of variants with and without 30-bp deletion was found only in 5/29 plasma samples. The incidence rate of XhoI restriction site loss in NPC was comparable to other studies from endemic regions such as Southern China. For the first time, the presence of LMP1 30-bp deletion or XhoI-loss was associated with the Chinese race and type III NPC. Both these variants were not found in non-malignant tissues. The influence of these variants on disease progression and outcome in Chinese and type III NPC requires further investigation.
Collapse
Affiliation(s)
- Hui Shien See
- Department of Pathology, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, Serdang, Malaysia.
| | | | | | | |
Collapse
|
14
|
Stacey PC, Summerfield AQ. Effectiveness of computer-based auditory training in improving the perception of noise-vocoded speech. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2007; 121:2923-35. [PMID: 17550190 DOI: 10.1121/1.2713668] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Five experiments were designed to evaluate the effectiveness of "high-variability" lexical training in improving the ability of normal-hearing subjects to perceive noise-vocoded speech that had been spectrally shifted to simulate tonotopic misalignment. Two approaches to training were implemented. One training approach required subjects to recognize isolated words, while the other training approach required subjects to recognize words in sentences. Both approaches to training improved the ability to identify words in sentences. Improvements following a single session (lasting 1-2 h) of auditory training ranged between 7 and 12 %pts and were significantly larger than improvements following a visual control task that was matched with the auditory training task in terms of the response demands. An additional three sessions of word- and sentence-based training led to further improvements, with the average overall improvement ranging from 13 to 18% pts. When a tonotopic misalignment of 3 mm rather than 6 mm was simulated, training with several talkers led to greater generalization to new talkers than training with a single talker. The results confirm that computer-based lexical training can help overcome the effects of spectral distortions in speech, and they suggest that training materials are most effective when several talkers are included.
Collapse
Affiliation(s)
- Paula C Stacey
- Department of Psychology, University of York, Heslington, York YO10 5DD, United Kingdom.
| | | |
Collapse
|
15
|
Abstract
Because there are many parameters in the cochlear implant (CI) device that can be optimized for individual patients, it is important to estimate a parameter's effect before patient evaluation. In this paper, Mel-frequency cepstrum coefficients (MFCCs) were used to estimate the acoustic vowel space for vowel stimuli processed by the CI simulations. The acoustic space was then compared to vowel recognition performance by normal-hearing subjects listening to the same processed speech. Five CI speech processor parameters were simulated to produce different degree of spectral resolution, spectral smearing, spectral warping, spectral shifting, and amplitude distortion. The acoustic vowel space was highly correlated with normal hearing subjects' vowel recognition performance for parameters that affected the spectral channels and spectral smearing. However, the acoustic vowel space was not significantly correlated with perceptual performance for parameters that affected the degree of spectral warping, spectral shifting, and amplitude distortion. In particular, while spectral warping and shifting did not significantly reshape the acoustic space, vowel recognition performance was significantly affected by these parameters. The results from the acoustic analysis suggest that the CI device can preserve phonetic distinctions under conditions of spectral warping and shifting. Auditory training may help CI patients better perceive these speech cues transmitted by their speech processors.
Collapse
Affiliation(s)
- Chuping Liu
- Department of Electrical Engineering, University of Southern California, Los Angeles, CA 90007, USA.
| | | |
Collapse
|
16
|
Hsueh C, Kuo TT, Tsang NM, Wu YC, Yang CP, Hung IJ. Thymic lymphoepitheliomalike carcinoma in children: clinicopathologic features and molecular analysis. J Pediatr Hematol Oncol 2006; 28:785-90. [PMID: 17164646 DOI: 10.1097/mph.0b013e31802d3a83] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Thymic lymphoepitheliomalike carcinoma (LELC) in children is extremely rare and we report 2 such cases with molecular analysis of Epstein-Barr virus (EBV) and its encoded latent membrane protein-1 as well as a literature review. Both of our patients were male, presented with a huge anterior mediastinal mass, expired within a year after diagnosis despite treatment. There were altogether 9 cases of thymic LELC in children. Their common clinical features include a male predominance, large tumor size, advanced clinical stage, and poor clinical outcome. All cases were associated with EBV and nearly half developed concurrent hypertrophic osteoarthropathy (HOA). Thymic LELC in children is an aggressive EBV-associated malignant tumor frequently accompanied by HOA. We proposed that EBV might play a role in the development of HOA through the interactions of latent membrane protein-1, vascular endothelial growth factor, and cyclooxygenases-2.
Collapse
Affiliation(s)
- Chuen Hsueh
- Department of Pathology, Chang Gung Memorial Hospital and Chang Gung University, Chang Gung Children's Hospital, Tao-Yuan, Taiwan, ROC. ch9211@.adm.cgmh.org.tw
| | | | | | | | | | | |
Collapse
|
17
|
Abstract
Nasopharyngeal carcinoma (NPC) has a unique and complex etiology that is not completely understood. Although NPC is rare in most populations, it is a leading form of cancer in a few well-defined populations, including natives of southern China, Southeast Asia, the Arctic, and the Middle East/North Africa. The distinctive racial/ethnic and geographic distribution of NPC worldwide suggests that both environmental factors and genetic traits contribute to its development. This review aims to summarize the current knowledge regarding the epidemiology of NPC and to propose new avenues of research that could help illuminate the causes and ultimately the prevention of this remarkable disease. Well-established risk factors for NPC include elevated antibody titers against the Epstein-Barr virus, consumption of salt-preserved fish, a family history of NPC, and certain human leukocyte antigen class I genotypes. Consumption of other preserved foods, tobacco smoking, and a history of chronic respiratory tract conditions may be associated with elevated NPC risk, whereas consumption of fresh fruits and vegetables and other human leukocyte antigen genotypes may be associated with decreased risk. Evidence for a causal role of various inhalants, herbal medicines, and occupational exposures is inconsistent. Other than dietary modification, no concrete preventive measures for NPC exist. Given the unresolved gaps in understanding of NPC, there is a clear need for large-scale, population-based molecular epidemiologic studies to elucidate how environmental, viral, and genetic factors interact in both the development and the prevention of this disease.
Collapse
Affiliation(s)
- Ellen T Chang
- Northern California Cancer Center, 2201 Walnut Avenue, Suite 300, Fremont, CA 94538, USA.
| | | |
Collapse
|
18
|
Perez N, Boleas MS, Martin E. Distortion product otoacoustic emissions after intratympanic gentamicin therapy for unilateral Ménière's disease. Audiol Neurootol 2005; 10:69-78. [PMID: 15650298 DOI: 10.1159/000083362] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2004] [Accepted: 07/29/2004] [Indexed: 11/19/2022] Open
Abstract
The treatment of patients with Ménière's disease that do not respond to conventional therapy becomes complicated, particularly when taking into account the issue of hearing damage as well as the control of vertigo. Treatment often involves the intratympanic administration of gentamicin, for which different protocols are used. Hence, it is important that we better understand how this treatment influences hearing, beyond mere audiometric assessments. The aim of this prospective study was to evaluate the effect of intratympanic gentamicin treatment for Ménière's disease on cochlear function, as assessed by otoacoustic emissions. The 41 patients included in the study had been diagnosed with unilateral Ménière's disease as defined by the American Academy of Otolaryngology-Head and Neck Surgery guidelines (1995), and had been refractory to medical treatment for at least 1 year. Intratympanic injections of gentamicin at a concentration of 27 mg/ml were performed at weekly intervals until indications of vestibular hypofunction appeared in the treated ear. Before beginning the treatment and 3 months after ending it, pure tone and speech audiometry tests were performed and the results are expressed in terms of the pure tone average (0.5, 1, 2, and 3 kHz) and the speech discrimination score, respectively. At the same time, a distortion product otoacoustic emission (DPOAE) study was performed and the results are expressed in terms of its presence or absence, and as the amplitude and threshold of the emission. When analyzed 3 months after the treatment had terminated, hearing loss was seen in 13 patients (31.7%). However, no significant change in the threshold and/or amplitude of otoacoustic emissions was observed in any of the patients. Neither were changes in the audiometric stage, number of injections required or the existence of DPOAE before treatment detected. Hence, the treatment method used here for patients with intractable unilateral Ménière's disease can be considered as having a low risk on auditory function, as assessed both audiometrically and with otoacoustic emissions, and can be considered as subablative for hearing function.
Collapse
Affiliation(s)
- Nicolas Perez
- Department of Otorhinolaryngology, University Hospital and Medical School, University of Navarra, Pamplona, Spain.
| | | | | |
Collapse
|