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Park SC, Lim HS, Mun SE, Jung YJ, Yoon AM, Son H, Kim CM, Choo YK, Lee JR. Potent Antifungal Functions of a Living Modified Organism Protein, CP4-EPSPS, against Pathogenic Fungal Cells. Molecules 2023; 28:molecules28114289. [PMID: 37298765 DOI: 10.3390/molecules28114289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Revised: 05/17/2023] [Accepted: 05/22/2023] [Indexed: 06/12/2023] Open
Abstract
Various proteins introduced into living modified organism (LMO) crops function in plant defense mechanisms against target insect pests or herbicides. This study analyzed the antifungal effects of an introduced LMO protein, 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) from Agrobacterium sp. strain CP4 (CP4-EPSPS). Pure recombinant CP4-EPSPS protein, expressed in Escherichia coli, inhibited the growth of human and plant fungal pathogens (Candida albicans, C. tropicalis, C. krusei, Colletotrichum gloeosporioides, Fusarium solani, F. graminearum, and Trichoderma virens), at minimum inhibitory concentrations (MICs) that ranged from 62.5 to 250 µg/mL. It inhibited fungal spore germination as well as cell proliferation on C. gloeosporioides. Rhodamine-labeled CP4-EPSPS accumulated on the fungal cell wall and within intracellular cytosol. In addition, the protein induced uptake of SYTOX Green into cells, but not into intracellular mitochondrial reactive oxygen species (ROS), indicating that its antifungal action was due to inducing the permeability of the fungal cell wall. Its antifungal action showed cell surface damage, as observed from fungal cell morphology. This study provided information on the effects of the LMO protein, EPSPS, on fungal growth.
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Affiliation(s)
- Seong-Cheol Park
- Department of Chemical Engineering, Sunchon National University, Suncheon 38286, Republic of Korea
| | - Hye Song Lim
- LMO Team, National Institute of Ecology (NIE), Seocheon 33657, Republic of Korea
- Department of Horticulture Industry, Wonkwang University, Iksan 54538, Republic of Korea
| | - Seong-Eun Mun
- Department of Biological Science, College of Natural Science, Wonkwang University, Iksan 54538, Republic of Korea
| | - Young Jun Jung
- LMO Team, National Institute of Ecology (NIE), Seocheon 33657, Republic of Korea
| | - A-Mi Yoon
- LMO Team, National Institute of Ecology (NIE), Seocheon 33657, Republic of Korea
- Division of Life Sciences, Jeonbuk National University, Jeonju 54896, Republic of Korea
| | - Hyosuk Son
- Department of Exhibition and Education, National Marine Biodiversity Institute of Korea, Seocheon 33662, Republic of Korea
| | - Chul Min Kim
- Department of Horticulture Industry, Wonkwang University, Iksan 54538, Republic of Korea
| | - Young-Kug Choo
- Department of Biological Science, College of Natural Science, Wonkwang University, Iksan 54538, Republic of Korea
| | - Jung Ro Lee
- LMO Team, National Institute of Ecology (NIE), Seocheon 33657, Republic of Korea
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Fouad FA, Youssef DG, Shahat FM, Abd El-Ghany MN. Role of Microorganisms in Biodegradation of Pollutants. HANDBOOK OF BIODEGRADABLE MATERIALS 2023:221-260. [DOI: 10.1007/978-3-031-09710-2_11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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Fouad FA, Youssef DG, Shahat FM, Abd El-Ghany MN. Role of Microorganisms in Biodegradation of Pollutants. HANDBOOK OF BIODEGRADABLE MATERIALS 2022:1-40. [DOI: 10.1007/978-3-030-83783-9_11-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 04/13/2022] [Indexed: 09/01/2023]
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Rebello S, Nathan VK, Sindhu R, Binod P, Awasthi MK, Pandey A. Bioengineered Microbes for Soil Health Restoration - Present Status and Future. Bioengineered 2021; 12:12839-12853. [PMID: 34775906 PMCID: PMC8810056 DOI: 10.1080/21655979.2021.2004645] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
According to the United Nations Environment Programme (UNEP), soil health is declining over the decades and it has an adverse impact on human health and food security. Hence, soil health restoration is a need of the hour. It is known that microorganisms play a vital role in remediation of soil pollutants like heavy metals, pesticides, hydrocarbons, etc. However, the indigenous microbes have a limited capacity to degrade these pollutants and it will be a slow process. Genetically modified organisms (GMOs) can catalyze the degradation process as their altered metabolic pathways lead to hypersecretions of various biomolecules that favor the bioremediation process. This review provides an overview on the application of bioengineered microorganisms for the restoration of soil health by degradation of various pollutants. It also sheds light on the challenges of using GMOs in environmental application as their introduction may affect the normal microbial community in soil. Since soil health also refers to the potential of native organisms to survive, the possible changes in the native microbial community with the introduction of GMOs are also discussed. Finally, the future prospects of using bioengineered microorganisms in environmental engineering applications to make the soil fertile and healthy have been deciphered. With the alarming rates of soil health loss, the treatment of soil and soil health restoration need to be fastened to a greater pace and the combinatorial efforts unifying GMOs, plant growth-promoting rhizobacteria, and other soil amendments will provide an effective solution to soil heath restoration ten years ahead.
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Affiliation(s)
| | - Vinod Kumar Nathan
- School of Chemical and Biotechnology, Sastra University, Thanjavur, India
| | - Raveendran Sindhu
- Microbial Processes and Technology Division, CSIR-National Institute for Interdisciplinary Science and Technology, Trivandrum - 695 019, India
| | - Parameswaran Binod
- Microbial Processes and Technology Division, CSIR-National Institute for Interdisciplinary Science and Technology, Trivandrum - 695 019, India
| | - Mukesh Kumar Awasthi
- College of Natural Resources and Environment, North West A & F University, Yangling, Shaanxi - 712 100, China
| | - Ashok Pandey
- Centre for Innovation and Translational Research, CSIR- Indian Institute for Toxicology Research, Lucknow - 226 001, India.,Centre for Energy and Environmental Sustainability, Lucknow-226 029, Uttar Pradesh, India
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Beacham TA, Sweet JB, Allen MJ. Large scale cultivation of genetically modified microalgae: A new era for environmental risk assessment. ALGAL RES 2017. [DOI: 10.1016/j.algal.2017.04.028] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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Azad MAK, Amin L, Sidik NM. Genetically engineered organisms for bioremediation of pollutants in contaminated sites. ACTA ACUST UNITED AC 2014. [DOI: 10.1007/s11434-013-0058-8] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Barnes MA, Turner CR, Jerde CL, Renshaw MA, Chadderton WL, Lodge DM. Environmental conditions influence eDNA persistence in aquatic systems. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:1819-27. [PMID: 24422450 DOI: 10.1021/es404734p] [Citation(s) in RCA: 331] [Impact Index Per Article: 33.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Environmental DNA (eDNA) surveillance holds great promise for improving species conservation and management. However, few studies have investigated eDNA dynamics under natural conditions, and interpretations of eDNA surveillance results are clouded by uncertainties about eDNA degradation. We conducted a literature review to assess current understanding of eDNA degradation in aquatic systems and an experiment exploring how environmental conditions can influence eDNA degradation. Previous studies have reported macrobial eDNA persistence ranging from less than 1 day to over 2 weeks, with no attempts to quantify factors affecting degradation. Using a SYBR Green quantitative PCR assay to observe Common Carp ( Cyprinus carpio ) eDNA degradation in laboratory mesocosms, our rate of Common Carp eDNA detection decreased over time. Common Carp eDNA concentration followed a pattern of exponential decay, and observed decay rates exceeded previously published values for aquatic macrobial eDNA. Contrary to our expectations, eDNA degradation rate declined as biochemical oxygen demand, chlorophyll, and total eDNA (i.e., from any organism) concentration increased. Our results help explain the widely divergent, previously published estimates for eDNA degradation. Measurements of local environmental conditions, consideration of environmental influence on eDNA detection, and quantification of local eDNA degradation rates will help interpret future eDNA surveillance results.
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Affiliation(s)
- Matthew A Barnes
- Department of Biological Sciences and Environmental Change Initiative, University of Notre Dame , Notre Dame, Indiana 46556, United States
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Guan J, Chan M, Spencer JL. The fate of recombinant plasmids during composting of organic wastes. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART. B, PESTICIDES, FOOD CONTAMINANTS, AND AGRICULTURAL WASTES 2010; 45:279-284. [PMID: 20394128 DOI: 10.1080/03601231003704556] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Composting was investigated as a means for safe disposal of organic waste containing bacteria that carry transgenes in recombinant plasmids. To generate model recombinant plasmids, a mobile IncQ plasmid, RSF1010, and a non-mobile plasmid, pGFP, were genetically modified to carry a DNA segment encoding both green fluorescent protein and kanamycin resistance and were designated as RSF1010-GFPK and pGFPK. Escherichia coli (E. coli) C600 harboring these plasmids were inoculated into chicken manure specimens that were placed in compost at 20 and 60 cm from the bottom of a 1.0-m high compost bin. Control specimens were held at ambient temperature. By day 10, compost temperatures at the lower and upper levels of the bin had reached 45.3 and 61.5 degrees C, respectively, and at both levels the target E. coli had been inactivated and the plasmids had lost their capacity to be transformed or mobilized. Furthermore, based on real time Polymerase chain reaction (PCR), the transgene fragments along with the host chromosomal DNA fragment from specimens at the upper level had been degraded beyond the detection limit. However, at the lower level where temperatures remained below 48 degrees C these fragment persisted to day 21. At ambient temperatures (0-8 degrees C), the E. coli, plasmids and the transgene fragments persisted in manure specimens throughout the 21 day test period. The study showed the potential for composting as a safe procedure for disposal of bacteria carrying transgenes in recombinant plasmids.
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Affiliation(s)
- Jiewen Guan
- Ottawa Laboratory (Fallowfield), Canadian Food Inspection Agency, Ottawa, Ontario, Canada.
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Hu Z, Lane R, Wen Z. Composting clam processing wastes in a laboratory- and pilot-scale in-vessel system. WASTE MANAGEMENT (NEW YORK, N.Y.) 2009; 29:180-185. [PMID: 18406125 DOI: 10.1016/j.wasman.2008.02.016] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2007] [Revised: 01/03/2008] [Accepted: 02/21/2008] [Indexed: 05/26/2023]
Abstract
Waste materials from the clam processing industry (offal, shells) have several special characteristics such as a high salinity level, a high nitrogen content, and a low C/N ratio. The traditional disposal of clam waste through landfilling is facing the challenges of limited land available, increasing tipping fees, and strict environmental and regulatory scrutiny. The aim of this work is to investigate the performance of in-vessel composting as an alternative for landfill application of these materials. Experiments were performed in both laboratory-scale (5L) and pilot-scale (120L) reactors, with woodchips as the bulking agent. In the laboratory-scale composting test, the clam waste and woodchips were mixed in ratios from 1:0.5 to 1:3 (w/w, wet weight). The high ratios resulted in a better temperature performance, a higher electrical conductivity, and a higher ash content than the low-ratio composting. The C/N ratio of the composts was in the range of 9:1-18:1. In the pilot-scale composting test, a 1:1 ratio of clam waste to woodchips was used. The temperature profile during the composting process met the US Environmental Protection Agency sanitary requirement. The final cured compost had a C/N ratio of 14.6, with an ash content of 167.0+/-14.1g/kg dry matter. In addition to the major nutrients (carbon, nitrogen, calcium, magnesium, phosphorus, potassium, sulfur, and sodium), the compost also contained trace amounts of zinc, manganese, copper, and boron, indicating that the material can be used as a good resource for plant nutrients.
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Affiliation(s)
- Zhenhu Hu
- Department of Biological Systems Engineering, Virginia Polytechnic Institute and State University, Virginia Tech, Blacksburg, VA 24061, USA
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Urgun-Demirtas M, Stark B, Pagilla K. Use of Genetically Engineered Microorganisms (GEMs) for the Bioremediation of Contaminants. Crit Rev Biotechnol 2008; 26:145-64. [PMID: 16923532 DOI: 10.1080/07388550600842794] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
This paper presents a critical review of the literature on the application of genetically engineered microorganisms (GEMs) in bioremediation. The important aspects of using GEMs in bioremediation, such as development of novel strains with desirable properties through pathway construction and the modification of enzyme specificity and affinity, are discussed in detail. Particular attention is given to the genetic engineering of bacteria using bacterial hemoglobin (VHb) for the treatment of aromatic organic compounds under hypoxic conditions. The application of VHb technology may advance treatment of contaminated sites, where oxygen availability limits the growth of aerobic bioremediating bacteria, as well as the functioning of oxygenases required for mineralization of many organic pollutants. Despite the many advantages of GEMs, there are still concerns that their introduction into polluted sites to enhance bioremediation may have adverse environmental effects, such as gene transfer. The extent of horizontal gene transfer from GEMs in the environment, compared to that of native organisms including benefits regarding bacterial bioremediation that may occur as a result of such transfer, is discussed. Recent advances in tracking methods and containment strategies for GEMs, including several biological systems that have been developed to detect the fate of GEMs in the environment, are also summarized in this review. Critical research questions pertaining to the development and implementation of GEMs for enhanced bioremediation have been identified and posed for possible future research.
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Affiliation(s)
- Meltem Urgun-Demirtas
- Department of Chemical and Environmental Engineering, Illinois Institute of Technology, Chicago, 60616, USA
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