Efficiency of electron beam over gamma rays to induce desirable grain-type mutation in rice (Oryza sativa L.)

Gamma irradiation to induce beneficial mutants in proso millet (Panicum miliaceum L.): an underutilized food crop

PURPOSE

Proso millet is a potential crop for food, nutritional security, and sustainable agriculture, particularly in the context of climate change. It is one of the traditional millet crops in cultivation in Tamil Nadu and India. Self-pollinated nature of this crop makes evolutionary process a terminal one and creating variability to broaden the genetic base is important. The objective of the study was to optimize mutagenic dose of gamma mutagen, document types of mutations and identify mutants for high grain yield (GY) and fodder yield (FY), hence to determine the feasibility of gamma mutagenesis in proso millet crop improvement.

MATERIALS AND METHODS

A mutation breeding program with 10 doses of gamma irradiation, i.e. 100, 200, 300, 400, 500, 600, 700, 800, 900 and 1000 Gy were imposed on seeds of variety ATL 1, a popular variety in India. Roll paper method, tray method and field evaluation were carried out to determine the LD₅₀ and GR₅₀ doses. Based on viable mutation frequency in M₂ generation, mutagenic effectiveness and efficiency was estimated. Targeted selection for yield and yield contributing traits was carried out in M₂, M₃ and M₄ generation to identify high yielding mutants.

RESULTS

The LD₅₀ and GR₅₀ doses of gamma were estimated to be 418 Gy and 542 Gy, respectively. Based on results from probit analysis, mutagenic effectiveness, mutagenic efficiency and mutation spectrum, the optimum treatment dose of gamma was concluded to be 400 Gy. High frequency, i.e. 10.96% of phenotypic mutants was identified in the M₂ generation. The broad range of mutants identified in M₂ generation had mutations for plant height, plant habit, panicle shape, compactness, and length, days to 50% flowering (DFF), lodging resistance, tillering, leaf phenotype, apiculus color, culm branching, stem and leaf hairiness, sheath pigmentation, seed color and shape and seed coat attachment. Eight high yielding mutant families were isolated in M₄ generation. The mean single plant GY and FY of these mutants ranged between 25 to 51 g and 40 to 68 g respectively while in control it was 15 g and 30 g, respectively.

CONCLUSIONS

The wide spectrum and high frequency of mutations both for qualitative and quantitative traits suggest mutation induction as a promising method for creating novel variations in proso millet. The high yielding mutants identified can be utilized for varietal development both for grain and fodder purpose after further stability and quality evaluations in the advanced generations.

Frequency and Spectrum of Mutations Induced by Gamma Rays Revealed by Phenotype Screening and Whole-Genome Re-Sequencing in Arabidopsis thaliana

Genetic variations are an important source of germplasm diversity, as it provides an allele resource that contributes to the development of new traits for plant breeding. Gamma rays have been widely used as a physical agent for mutation creation in plants, and their mutagenic effect has attracted extensive attention. However, few studies are available on the comprehensive mutation profile at both the large-scale phenotype mutation screening and whole-genome mutation scanning. In this study, biological effects on M₁ generation, large-scale phenotype screening in M₂ generation, as well as whole-genome re-sequencing of seven M₃ phenotype-visible lines were carried out to comprehensively evaluate the mutagenic effects of gamma rays on Arabidopsis thaliana. A total of 417 plants with visible mutated phenotypes were isolated from 20,502 M₂ plants, and the phenotypic mutation frequency of gamma rays was 2.03% in Arabidopsis thaliana. On average, there were 21.57 single-base substitutions (SBSs) and 11.57 small insertions and deletions (InDels) in each line. Single-base InDels accounts for 66.7% of the small InDels. The genomic mutation frequency was 2.78 × 10⁻¹⁰/bp/Gy. The ratio of transition/transversion was 1.60, and 64.28% of the C > T events exhibited the pyrimidine dinucleotide sequence; 69.14% of the small InDels were located in the sequence with 1 to 4 bp terminal microhomology that was used for DNA end rejoining, while SBSs were less dependent on terminal microhomology. Nine genes, on average, were predicted to suffer from functional alteration in each re-sequenced line. This indicated that a suitable mutation gene density was an advantage of gamma rays when trying to improve elite materials for one certain or a few traits. These results will aid the full understanding of the mutagenic effects and mechanisms of gamma rays and provide a basis for suitable mutagen selection and parameter design, which can further facilitate the development of more controlled mutagenesis methods for plant mutation breeding.