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Isolation and Characterization of Bacteria and Fungi Associated with Agarwood Fermentation. Curr Microbiol 2022; 79:313. [DOI: 10.1007/s00284-022-02999-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2021] [Accepted: 08/14/2022] [Indexed: 11/03/2022]
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Lee S, Kwon RH, Kim JH, Na H, Lee SJ, Choi YM, Yoon H, Kim SY, Kim YS, Lee SH, Yoo SM, Kim HW, Wee CD. Changes in Isoflavone Profile from Soybean Seeds during Cheonggukjang Fermentation Based on High-Resolution UPLC-DAD-QToF/MS: New Succinylated and Phosphorylated Conjugates. Molecules 2022; 27:4120. [PMID: 35807366 PMCID: PMC9268511 DOI: 10.3390/molecules27134120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 06/23/2022] [Accepted: 06/24/2022] [Indexed: 11/16/2022] Open
Abstract
In this study, thirty-eight isoflavone derivatives were comprehensively identified and quantified from the raw, steamed and fermented seeds of four selected soybean cultivars based on UPLC-DAD-QToF/MS results with reference to the previously reported LC-MS library and flavonoid database, and summarized by acylated group including glucosides (Glu), malonyl-glucosides (Mal-Glu), acetyl-glucosides (Ac-Glu), succinyl-glucosides (Suc-Glu) and phosphorylated conjugates (Phos) in addition to aglycones. Among them, Suc-Glu and Phos derivatives were newly generated due to fermentation by B. subtilis AFY-2 (cheonggukjang). In particular, Phos were characterized for the first time in fermented soy products using Bacillus species. From a proposed roadmap on isoflavone-based biotransformation, predominant Mal-Glu (77.5-84.2%, raw) decreased rapidly by decarboxylation and deesterification into Ac-Glu and Glu (3.5-8.1% and 50.0-72.2%) during steaming, respectively. As fermentation continued, the increased Glu were mainly succinylated and phosphorylated as well as gradually hydrolyzed into their corresponding aglycones. Thus, Suc-Glu and Phos (17.3-22.4% and 1.5-5.4%, 36 h) determined depending on cultivar type and incubation time, and can be considered as important biomarkers generated during cheonggukjang fermentation. Additionally, the changes of isoflavone profile can be used as a fundamental report in applied microbial science as well as bioavailability research from fermented soy foods.
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Affiliation(s)
- Suji Lee
- Department of Agro-Food Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Korea; (S.L.); (R.H.K.); (J.H.K.); (H.N.); (S.-J.L.); (S.Y.K.); (S.H.L.); (S.M.Y.)
- Department of Food Science and Technology, Jeonbuk National University, Jeonju 54896, Korea;
| | - Ryeong Ha Kwon
- Department of Agro-Food Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Korea; (S.L.); (R.H.K.); (J.H.K.); (H.N.); (S.-J.L.); (S.Y.K.); (S.H.L.); (S.M.Y.)
| | - Ju Hyung Kim
- Department of Agro-Food Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Korea; (S.L.); (R.H.K.); (J.H.K.); (H.N.); (S.-J.L.); (S.Y.K.); (S.H.L.); (S.M.Y.)
| | - Hyemin Na
- Department of Agro-Food Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Korea; (S.L.); (R.H.K.); (J.H.K.); (H.N.); (S.-J.L.); (S.Y.K.); (S.H.L.); (S.M.Y.)
| | - So-Jeong Lee
- Department of Agro-Food Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Korea; (S.L.); (R.H.K.); (J.H.K.); (H.N.); (S.-J.L.); (S.Y.K.); (S.H.L.); (S.M.Y.)
| | - Yu-Mi Choi
- National Agrobiodiversity Center, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Korea; (Y.-M.C.); (H.Y.)
| | - Hyemyeong Yoon
- National Agrobiodiversity Center, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Korea; (Y.-M.C.); (H.Y.)
| | - So Young Kim
- Department of Agro-Food Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Korea; (S.L.); (R.H.K.); (J.H.K.); (H.N.); (S.-J.L.); (S.Y.K.); (S.H.L.); (S.M.Y.)
| | - Yong-Suk Kim
- Department of Food Science and Technology, Jeonbuk National University, Jeonju 54896, Korea;
| | - Sang Hoon Lee
- Department of Agro-Food Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Korea; (S.L.); (R.H.K.); (J.H.K.); (H.N.); (S.-J.L.); (S.Y.K.); (S.H.L.); (S.M.Y.)
| | - Seon Mi Yoo
- Department of Agro-Food Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Korea; (S.L.); (R.H.K.); (J.H.K.); (H.N.); (S.-J.L.); (S.Y.K.); (S.H.L.); (S.M.Y.)
| | - Heon-Woong Kim
- Department of Agro-Food Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Korea; (S.L.); (R.H.K.); (J.H.K.); (H.N.); (S.-J.L.); (S.Y.K.); (S.H.L.); (S.M.Y.)
| | - Chi-Do Wee
- Department of Agro-Food Resources, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Korea; (S.L.); (R.H.K.); (J.H.K.); (H.N.); (S.-J.L.); (S.Y.K.); (S.H.L.); (S.M.Y.)
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Park TJ, Hong H, Kim MS, Park JS, Chi WJ, Kim SY. Prunetin 4'- O-Phosphate, a Novel Compound, in RAW 264.7 Macrophages Exerts Anti-Inflammatory Activity via Suppression of MAP Kinases and the NFκB Pathway. Molecules 2021; 26:molecules26226841. [PMID: 34833933 PMCID: PMC8622051 DOI: 10.3390/molecules26226841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 11/03/2021] [Accepted: 11/09/2021] [Indexed: 11/30/2022] Open
Abstract
Biorenovation, a microbial enzyme-assisted degradation process of precursor compounds, is an effective approach to unraveling the potential bioactive properties of the derived compounds. In this study, we obtained a new compound, prunetin 4′-O-phosphate (P4P), through the biorenovation of prunetin (PRN), and investigated its anti-inflammatory effects in lipopolysaccharide (LPS)-treated RAW 264.7 macrophage cells. The anti-inflammatory effect of P4P was evaluated by measuring the production of prostaglandin-E2 (PGE2), nitric oxide (NO), which is an inflammation-inducing factor, and related cytokines such as tumor necrosis factor-α (TNFα), interleukin-1β (IL1β), and interleukin-6 (IL6). The findings demonstrated that P4P was non-toxic to cells, and its inhibition of the secretion of NO—as well as pro-inflammatory cytokines—was concentration-dependent. A simultaneous reduction in the protein expression level of pro-inflammatory proteins such as cyclooxygenase-2 (COX-2) and inducible nitric oxide synthase (iNOS) was observed. Moreover, the phosphorylation of mitogen-activated protein kinases (MAPKs) such as extracellular signal-regulated kinases (ERKs), c-Jun N-terminal kinase (JNK), p38 MAPK (p38), and nuclear factor kappa B (NFκB) was downregulated. To conclude, we report that biorenovation-based phosphorylation of PRN improved its anti-inflammatory activity. Cell-based in vitro assays further confirmed that P4P could be applied in the development of anti-inflammatory therapeutics.
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Affiliation(s)
- Tae-Jin Park
- Department of Pharmaceutical Engineering & Biotechnology, Sunmoon University, Asan 31460, Korea; (T.-J.P.); (H.H.)
| | - Hyehyun Hong
- Department of Pharmaceutical Engineering & Biotechnology, Sunmoon University, Asan 31460, Korea; (T.-J.P.); (H.H.)
| | - Min-Seon Kim
- Natural Product Informatics Research Center, Korea Institute of Science and Technology, Gangneung 25451, Korea; (M.-S.K.); (J.-S.P.)
| | - Jin-Soo Park
- Natural Product Informatics Research Center, Korea Institute of Science and Technology, Gangneung 25451, Korea; (M.-S.K.); (J.-S.P.)
| | - Won-Jae Chi
- Genetic Resources Assessment Division, National Institute of Biological Resources, Incheon 22689, Korea;
| | - Seung-Young Kim
- Department of Pharmaceutical Engineering & Biotechnology, Sunmoon University, Asan 31460, Korea; (T.-J.P.); (H.H.)
- Correspondence: ; Tel.: +82-41-530-2390
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Sajid M, Stone SR, Kaur P. Recent Advances in Heterologous Synthesis Paving Way for Future Green-Modular Bioindustries: A Review With Special Reference to Isoflavonoids. Front Bioeng Biotechnol 2021; 9:673270. [PMID: 34277582 PMCID: PMC8282456 DOI: 10.3389/fbioe.2021.673270] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Accepted: 05/27/2021] [Indexed: 12/12/2022] Open
Abstract
Isoflavonoids are well-known plant secondary metabolites that have gained importance in recent time due to their multiple nutraceutical and pharmaceutical applications. In plants, isoflavonoids play a role in plant defense and can confer the host plant a competitive advantage to survive and flourish under environmental challenges. In animals, isoflavonoids have been found to interact with multiple signaling pathways and have demonstrated estrogenic, antioxidant and anti-oncologic activities in vivo. The activity of isoflavonoids in the estrogen pathways is such that the class has also been collectively called phytoestrogens. Over 2,400 isoflavonoids, predominantly from legumes, have been identified so far. The biosynthetic pathways of several key isoflavonoids have been established, and the genes and regulatory components involved in the biosynthesis have been characterized. The biosynthesis and accumulation of isoflavonoids in plants are regulated by multiple complex environmental and genetic factors and interactions. Due to this complexity of secondary metabolism regulation, the export and engineering of isoflavonoid biosynthetic pathways into non-endogenous plants are difficult, and instead, the microorganisms Saccharomyces cerevisiae and Escherichia coli have been adapted and engineered for heterologous isoflavonoid synthesis. However, the current ex-planta production approaches have been limited due to slow enzyme kinetics and traditionally laborious genetic engineering methods and require further optimization and development to address the required titers, reaction rates and yield for commercial application. With recent progress in metabolic engineering and the availability of advanced synthetic biology tools, it is envisaged that highly efficient heterologous hosts will soon be engineered to fulfill the growing market demand.
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Affiliation(s)
| | | | - Parwinder Kaur
- UWA School of Agriculture and Environment, University of Western Australia, Perth, WA, Australia
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Kim MS, Park JS, Chung YC, Jang S, Hyun CG, Kim SY. Anti-Inflammatory Effects of Formononetin 7- O-phosphate, a Novel Biorenovation Product, on LPS-Stimulated RAW 264.7 Macrophage Cells. Molecules 2019; 24:molecules24213910. [PMID: 31671623 PMCID: PMC6864718 DOI: 10.3390/molecules24213910] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Revised: 10/29/2019] [Accepted: 10/29/2019] [Indexed: 01/01/2023] Open
Abstract
Biorenovation is a microbial enzyme-catalyzed structural modification of organic compounds with the potential benefits of reduced toxicity and improved biological properties relative to their precursor compounds. In this study, we synthesized a novel compound verified as formononetin 7-O-phosphate (FMP) from formononetin (FM) using microbial biotransformation. We further compared the anti-inflammatory properties of FMP to FM in lipopolysaccharide (LPS)-treated RAW264.7 macrophage cells. We observed that cell viabilities and inhibitory effects on LPS-induced nitric oxide (NO) production were greater in FMP-treated RAW 264.7 cells than in their FM-treated counterparts. In addition, FMP treatment suppressed the production of proinflammatory cytokines such as prostaglandin-E2 (PGE2), interleukin-6 (IL-6), and interleukin-1β (IL-1β) in a dose-dependent manner and concomitantly decreased the mRNA expression of inducible NO synthase (iNOS) and cyclooxygenase-2 (COX-2). We also found that FMP exerted its anti-inflammatory effects through the downregulation of the extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and nuclear factor kappa B (NF-κB) signaling pathways. In conclusion, we generated a novel anti-inflammatory compound using biorenovation and demonstrated its efficacy in cell-based in vitro assays.
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Affiliation(s)
- Min-Seon Kim
- Department of Pharmaceutical Engineering & Biotechnology, Sunmoon University, Chungnam 31460, Korea.
| | - Jin-Soo Park
- Natural Product Informatics Research Center, KIST Gangneung Institute of Natural Products, Korea Institute of Science and Technology (KIST), 679, Saimdang-ro 25451, Korea.
| | - You Chul Chung
- Department of Chemistry and Cosmetics, Jeju National University, Jeju 63243, Korea.
| | - Sungchan Jang
- Department of Pharmaceutical Engineering & Biotechnology, Sunmoon University, Chungnam 31460, Korea.
| | - Chang-Gu Hyun
- Department of Chemistry and Cosmetics, Jeju National University, Jeju 63243, Korea.
| | - Seung-Young Kim
- Department of Pharmaceutical Engineering & Biotechnology, Sunmoon University, Chungnam 31460, Korea.
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Koirala M, Lee YK, Kim MS, Chung YC, Park JS, Kim SY. Biotransformation of Naringenin by Bacillus amyloliquefaciens Into Three Naringenin Derivatives. Nat Prod Commun 2019. [DOI: 10.1177/1934578x19851971] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
In this study, a whole-cell biotransformation by Bacillus amyloliquefaciens Korean Collection for Type Culture 13588 was carried out to acquire naringenin derivatives. High-performance liquid chromatography analysis of the reaction metabolites showed the presence of 3 different products. The structure of the metabolites was confirmed through high-resolution quadrupole-time-of-flight electrospray-ionization mass spectrometry and nuclear magnetic resonance analysis. The result revealed that B. amyloliquefaciens catalyzes naringenin into 3 derivatives, naringenin 7- O-phosphate, naringenin 7- O-glucoside (prunin), and 6''- O-succinylprunin. To our knowledge, this is the first report of the production of 3 different derivatives when naringenin was used as a substrate. Furthermore, our study also revealed that the product naringenin 7- O-phosphate has approximately 45-fold higher water solubility than that of naringenin. Our finding suggests that biotransformation might solve the low bioavailability of flavonoids.
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Affiliation(s)
- Manoj Koirala
- Department of BT-Convergent Pharmaceutical Engineering, Sun Moon University, Asan-si, Chungnam, Republic of Korea
| | - Young Kee Lee
- Natural Constituents Research Center, Korea Institute of Science and Technology (KIST), Gangneung-si, Gangwon-do, Republic of Korea
- Department of Biology, Gangneung-Wonju National University, Gangneung-si, Gangwon-do, Republic of Korea
| | - Min Seon Kim
- Department of BT-Convergent Pharmaceutical Engineering, Sun Moon University, Asan-si, Chungnam, Republic of Korea
| | - You Chul Chung
- Department of BT-Convergent Pharmaceutical Engineering, Sun Moon University, Asan-si, Chungnam, Republic of Korea
| | - Jin-Soo Park
- Natural Constituents Research Center, Korea Institute of Science and Technology (KIST), Gangneung-si, Gangwon-do, Republic of Korea
| | - Seung-Young Kim
- Department of BT-Convergent Pharmaceutical Engineering, Sun Moon University, Asan-si, Chungnam, Republic of Korea
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Żyszka-Haberecht B, Poliwoda A, Lipok J. 'Structural constraints in cyanobacteria-mediated whole-cell biotransformation of methoxylated and methylated derivatives of 2'-hydroxychalcone. J Biotechnol 2019; 293:36-46. [PMID: 30690100 DOI: 10.1016/j.jbiotec.2019.01.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Revised: 12/14/2018] [Accepted: 01/03/2019] [Indexed: 11/24/2022]
Abstract
Halophilic and freshwater strains of cyanobacteria representing the Oscillatoriales, Nostocales, Chroococcales, and Synechococcales orders of Cyanophyta were examined to determine (i) the resistance of their cultures when suppressed by the presence of exogenous methoxylated and methylated derivatives of 2'-hydroxychalcone, (ii) morphological changes in cells treated with the tested chalcones and, most importantly, (iii) whether these photoautotrophic microorganisms transform chalcone derivatives in a structure- or strain-dependent manner. The growth of cyanobacterial cultures depended on chalcone derivatives and the strain; nevertheless, trends for correlations between these parameters are difficult to determine. The exposure of cyanobacteria to the tested chalcones revealed severe membrane damage that was consistent with the disruption of membrane integrity. All examined blue-green algae transformed methoxy derivatives of 2'-hydroxychalcone via hydrogenative bio-reduction and formed the corresponding hydroxydihydro derivatives with various efficiencies (≤1 - 70%), depending more on the structure than on the strain. We observed dependency of the routes and efficiency of biohydrogenation of tested chalcones on the location of the methoxyl substituent and, to a lesser extent, on cyanobacterial strains. 2'-hydroxy-4″-methylchalcone was also converted by cyanobacteria to various products, amongst which the most interesting were 2'-ethoxy derivatives. The final products of biocatalytic transformation were extracted from the cyanobacterial media, separated by high performance thin-layer chromatography (HPTLC) and identified by a combination of liquid chromatography-tandem mass spectrometry (LC-MS/MS technique) and one-dimensional (1D 1H and 13C) and two-dimensional (2D HSQC and COSY) nuclear magnetic resonance (NMR) spectroscopy.
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Affiliation(s)
- Beata Żyszka-Haberecht
- Department of Analytical and Ecological Chemistry, Faculty of Chemistry, University of Opole, Oleska 48, 45-052, Opole, Poland.
| | - Anna Poliwoda
- Department of Analytical and Ecological Chemistry, Faculty of Chemistry, University of Opole, Oleska 48, 45-052, Opole, Poland.
| | - Jacek Lipok
- Department of Analytical and Ecological Chemistry, Faculty of Chemistry, University of Opole, Oleska 48, 45-052, Opole, Poland.
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