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Manjunath M, Sujata FH, Shridhara AH, Vinay Kumar B, Prashantha K, Yogendra K, Madhusudhana N. Sustainable synthesis of benzimidazole-based Schiff base using reusable CaAl 2O 4 nanophosphors catalyst: Insights into metal(II) complexes and DNA interactions. NUCLEOSIDES, NUCLEOTIDES & NUCLEIC ACIDS 2025:1-23. [PMID: 39827474 DOI: 10.1080/15257770.2025.2451375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2024] [Revised: 12/03/2024] [Accepted: 01/03/2025] [Indexed: 01/22/2025]
Abstract
This article presents a new and facile method for the synthesis of Schiff base compounds with a benzimidazole group using a low-cost and reusable calcium aluminate nanophosphorus catalyst (CaAl2O4). This approach avoids harmful solvents and reactants, supporting a more environmentally friendly synthesis process. The catalyst maintained its activity and heterogeneity over four cycles with minimal loss of efficiency. The synthesis process was straightforward and eliminated the need for column chromatography. The Schiff base ligand (HL=(E)-N-((6-(thiophen-2-yl)pyridin-2-yl)methylene)-1H-benzo[d]imidazol-2-amine)) was synthesized by the reaction of 6-(thiophen-2-yl)pyridine-2-carbaldehyde with 1H-benzimidazole-2-amine. Subsequently, metal(II) complexes of Co(II), Ni(II), and Cu(II) were prepared using this ligand. Structural analysis of both the ligand and its metal complexes was carried out using various physicochemical and spectroscopic methods. Ni(II) and Co(II) complexes were found to adopt an octahedral geometry, while the Cu(II) complex exhibited a square-planar structure. Binding studies with calf thymus DNA (CT-DNA) at pH 7.2 were performed using UV-visible spectroscopy, viscosity measurements, and thermal denaturation studies and showed that the metal complexes intercalate into the DNA and produced a distinct binding pattern. Molecular docking simulations with AutoDock Vina provided insights into the interaction of these complexes with the B-DNA dodecamer. Furthermore, the ligand and its metal complexes showed UV-visible photonuclease activity against pUC19 DNA. Agarose gel electrophoresis showed that the metal complexes exhibit photoinduced nuclease activity, confirming their ability to cleave DNA upon exposure to light.
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Affiliation(s)
- M Manjunath
- Department of Chemistry, Research Centre, Vemana Institute of Technology, Bengaluru, India
| | - F H Sujata
- Department of Chemistry, Research Centre, Vemana Institute of Technology, Bengaluru, India
| | - A H Shridhara
- Department of Chemistry, S.V.M. Arts, Science and Commerce College, Ilkal, India
| | - B Vinay Kumar
- Department of Chemistry, BGS College of Engineering and Technology, Bengaluru, India
| | - K Prashantha
- Department of Biotechnology, Dayananda Sagar College of Engineering (Affiliated to Visvesvaraya Technological University, Belagavi, India
| | - K Yogendra
- Department of PG Studies and Research in Environmental Science, Kuvempu University, Shankaraghatta, India
| | - N Madhusudhana
- Department of PG Studies and Research in Environmental Science, Kuvempu University, Shankaraghatta, India
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Yabaş E, Şahin-Bölükbaşı S, Şahin-İnan ZD. New water soluble magnesium phthalocyanine as a potential anticancer drug: Cytotoxic and apoptotic effect on different cancer cell lines. J PORPHYR PHTHALOCYA 2021. [DOI: 10.1142/s1088424621500863] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Although phthalocyanines are usually used a photosensitizers for photodynamic therapy, these works focus on the directly cytotoxic effect of a new water-soluble magnesium phthalocyanine. The new water-soluble magnesium phthalocyanine 2 was synthesized, characterized and investigated for cytotoxic and apoptotic activities. The cytotoxic activities of the compound 2 were determined by using (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) cell viability assay on human breast cancer cells (MDA-MB-231, MCF-7), human prostate cancer cells (PC-3), and human healthy lung fibroblast cells (WI-38). The cells were plated and treated 1 to 20 [Formula: see text]M of different concentrations of the compound. MTT assay results indicated that the compound 2 has concentration and time-dependent cytotoxic activities against cancer cells. We also observed that the compound displayed lower toxicity against WI-38 healthy cells than cancer cells at 48 and 72 h. The compound showed a significant cytotoxic activity difference between breast cancer cells and WI-38 healthy cells at 48 and 72 h. Selectivity index of the compound 2 against MCF-7 for 72 h was calculated ¿ 15.62. We also studied the apoptotic and necrotic effect of compound 2using TUNEL and PI staining, respectively. It was found that the synthesized compound 2 increased apoptotic and necrotic cells.
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Affiliation(s)
- Ebru Yabaş
- Advanced Technology Application and Research Center, Sivas Cumhuriyet University, 58140 Sivas, Turkey
| | - Serap Şahin-Bölükbaşı
- Department of Biochemistry, Faculty of Pharmacy, Sivas Cumhuriyet University, 58140 Sivas, Turkey
| | - Zeynep Deniz Şahin-İnan
- Department of Histology & Embryology, Medicine Faculty, Sivas Cumhuriyet University, 58140 Sivas, Turkey
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Vinay Kumar B, Ananda Murthy HC, Aravinda T, Harish KN, Bhojya Naik HS. Advancement in specific strand scission of DNA and evaluation of in-vitro biological assessment by pharmacologically significant tetraaza macrocyclic metal complexes constrained by triazole. NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS 2021; 40:896-913. [PMID: 34396914 DOI: 10.1080/15257770.2021.1962536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
INTRODUCTION
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Affiliation(s)
- B Vinay Kumar
- Department of Chemistry, RNS Institute of Technology, Bengaluru, Karnataka, India
| | - H C Ananda Murthy
- Department of Applied Chemistry, School of Applied Natural Science, Adama Science and Technology University, Adama, Ethiopia
| | - T Aravinda
- Department of Chemistry, Nitte Meenakshi Institute of Technology, Yelahanka, Bengaluru, Karnataka, India
| | - K N Harish
- Department of Chemistry, Dayananda Sagar College of Engineering, Bengaluru, India
| | - H S Bhojya Naik
- Department of Studies and Research in Industrial Chemistry, Kuvempu University, Shankaraghatta, Shimoga, India
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Vidyavathi GT, Vinay Kumar B, Aravinda T, Hani U. Cashew nutshell liquid catalyzed green chemistry approach for synthesis of a Schiff base and its divalent metal complexes: molecular docking and DNA reactivity. NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS 2021; 40:264-287. [PMID: 33402026 DOI: 10.1080/15257770.2020.1868502] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
Cashew Nut Shell Liquid (CNSL) anacardic acid was used, for the first time, as a green and natural effective catalyst for the synthesis of a quinoline based amino acid Schiff base ligand from the condensation of 2-hydroxyquinoline-3-carbaldehyde with l-tryptophan via solvent-free simple physical grinding technique. The use of the nontoxic CNSL natural catalyst has many benefits over toxic reagents and the desired product was obtained in high yield in a short reaction time. The procedure employed is simple and does not involve column chromatography. Moreover, a series of metal(II) complexes (metal = iron(II), cobalt(II), nickel(II), and copper(II)) supported by the synthesized new quinoline based amino acid Schiff base ligand (L) has been designed and the compositions of the metal(II) complexes were examined by various analytical techniques. The findings imply that the 2-hydroxyquinoline-3-carbaldehyde amino acid Schiff base (L) serves as a dibasic tridentate ONO ligand and synchronizes with the metal(II) in octahedral geometry in accordance with the general formula [M(LH)2]. Molecular docking study of the metal(II) complexes with B-DNA dodecamer has revealed good binding energy. The conductivity parameters in DMSO suggest the existence of nonelectrolyte species. The interaction of these metal complexes with CT-DNA has shown strong binding via an intercalative mode with a different pattern of DNA binding, while UV-visible photo-induced molecular cleavage analysis against plasmid DNA using agarose gel electrophoresis has revealed that the metal complexes exhibit photo induced nuclease activity.
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Affiliation(s)
- G T Vidyavathi
- Department of Chemistry, RNS Institute of Technology, Channasandra, Bengaluru, Karnataka, India
| | - B Vinay Kumar
- Department of Chemistry, RNS Institute of Technology, Channasandra, Bengaluru, Karnataka, India
| | - T Aravinda
- Department of Chemistry, NITTE Meenakshi Institute of Technology, Yelahanka, Bengaluru, Karnataka, India
| | - U Hani
- Department of Biotechnology, Kuvempu University, Shankaraghatta, Shivamogga, Karnataka, India
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Roudini L, NayebZadeh Eidgahi N, Rahimi HR, Saberi MR, Amiri Tehranizadeh Z, Beigoli S, Chamani J. Determining the interaction behavior of calf thymus DNA with berberine hydrochloride in the presence of linker histone: a biophysical study. J Biomol Struct Dyn 2019; 38:364-381. [DOI: 10.1080/07391102.2019.1574240] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Louisa Roudini
- Department of Biology, Faculty of Sciences, Mashhad Branch, Islamic Azad University, Mashhad, Iran
| | - Negar NayebZadeh Eidgahi
- Department of Biology, Faculty of Sciences, Mashhad Branch, Islamic Azad University, Mashhad, Iran
| | - Hamid Reza Rahimi
- Neurogenic Inflammation Research Center, Mashhad University of Medical Sciences, Mashhad, Iran
- Department of Modern Sciences & Technologies, School of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Mohammad Reza Saberi
- Medical Chemistry Department, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Zeinab Amiri Tehranizadeh
- Medical Chemistry Department, School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Sima Beigoli
- Endoscopic and Minimally Invasive Surgery Research Center, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Jamshidkhan Chamani
- Department of Biology, Faculty of Sciences, Mashhad Branch, Islamic Azad University, Mashhad, Iran
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Shakibapour N, Dehghani Sani F, Beigoli S, Sadeghian H, Chamani J. Multi-spectroscopic and molecular modeling studies to reveal the interaction between propyl acridone and calf thymus DNA in the presence of histone H1: binary and ternary approaches. J Biomol Struct Dyn 2018; 37:359-371. [DOI: 10.1080/07391102.2018.1427629] [Citation(s) in RCA: 66] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Niloufar Shakibapour
- Faculty of Sciences, Department of Biology, Islamic Azad University, Mashhad Branch, Mashhad, Iran
| | - Farzad Dehghani Sani
- Faculty of Sciences, Department of Biology, Islamic Azad University, Mashhad Branch, Mashhad, Iran
| | - Sima Beigoli
- Department of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Hamid Sadeghian
- Neurogenic Inflammation Research Center, Mashhad University of Medical Sciences, Mashhad, Iran
- Department of Laboratory Sciences, School of Paramedical Sciences, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Jamshidkhan Chamani
- Faculty of Sciences, Department of Biology, Islamic Azad University, Mashhad Branch, Mashhad, Iran
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Novel iron phenanthroline-based photosensitizers for antimicrobial PDT: synthesis, DNA binding and photo-induced DNA cleavage activity. Med Chem Res 2017. [DOI: 10.1007/s00044-017-1831-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Pradeepa SM, Bhojya Naik HS, Vinay Kumar B, Indira Priyadarsini K, Barik A, Prabhakara MC. DNA binding, photoactivated DNA cleavage and cytotoxic activity of Cu(II) and Co(II) based Schiff-base azo photosensitizers. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 141:34-42. [PMID: 25659740 DOI: 10.1016/j.saa.2015.01.019] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2014] [Revised: 12/12/2014] [Accepted: 01/14/2015] [Indexed: 06/04/2023]
Abstract
A new class of Cu(II) and Co(II) complexes of azo-containing Schiff base of the type [Cu(L1)2] and [Co(L1)2], where L1=4-[(E)-{2-hydroxy-3-[(E)-(4-bromophenyl)diazenyl]benzylidene}amino]benzoic acid have been synthesized and characterized. Extension of conjugation and the presence of free carboxylic acid group of the ligand L1 increased the wavelength of the complexes from visible region to the near IR region (620-850 nm). The Cu(II) and Co(II) complexes interacted with CT-DNA via intercalative mode with the respective Kb value of 3.2×10(4) M(-1) and 2.9×10(4) M(-1) and acted as proficient photocleavers of SC pUC19 DNA in UV-A light, forming (1)O2 as the reactive oxygen species with the quantum yield of 0.38 and 0.36, respectively. Furthermore, the Cu(II) and Co(II) complexes showed photocytotoxicity toward two selected tumor cell lines MCF-7 and A549 by 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazoliumbromide (MTT) method, and the Cu(II) complex exhibits higher photocytotoxicity than Co(II) complex against each of the selected cell lines, this result is identical with their DNA binding ability order.
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Affiliation(s)
- S M Pradeepa
- Department of Studies and Research in Industrial Chemistry, Kuvempu University, Shankaraghatta 577 451, Shimoga, India
| | - H S Bhojya Naik
- Department of Studies and Research in Industrial Chemistry, Kuvempu University, Shankaraghatta 577 451, Shimoga, India.
| | - B Vinay Kumar
- Department of Chemistry, R N Shetty Institute of Technology, Uttarahalli Road, Channasandra, Bengaluru 560 098, India
| | - K Indira Priyadarsini
- Radiation Chemistry Section, Radiation and Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400 085, India
| | - Atanu Barik
- Radiation Chemistry Section, Radiation and Photochemistry Division, Bhabha Atomic Research Centre, Mumbai 400 085, India
| | - M C Prabhakara
- Department of Studies and Research in Industrial Chemistry, Sir. M. V. Govt. Science College, Bommanakatte, Bhadravathi 577 302, India
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Sudhamani CN, Bhojya Naik HS, Sangeetha Gowda KR, Giridhar M, Girija D, Prashanth Kumar PN. Synthesis, DNA interactions and antibacterial PDT of Cu(II) complexes of phenanthroline based photosensitizers via singlet oxygen generation. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 138:780-788. [PMID: 25544194 DOI: 10.1016/j.saa.2014.11.085] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2014] [Revised: 11/08/2014] [Accepted: 11/20/2014] [Indexed: 06/04/2023]
Abstract
Cu(II) complexes [Cu(mqt)(B)H2O]ClO4(1-3) of 2-thiol 4-methylquinoline and phenanthroline bases (B), viz 1,10-phenanthroline (phen in 1), Dipyrido[3,2-d:2',3'-f]quinoxaline (dpq in 2) and Dipyrido[3,2-a:2',3'-c]phenazine (dppz in 3) have been prepared and characterized by elemental analysis, IR, UV-Vis, magnetic moment values, EPR spectra and conductivity measurements. The spectral data reveal that all the complexes exhibit square-pyramidal geometry. The DNA-binding behaviors of the three complexes were investigated by absorption spectra, viscosity measurements and thermal denaturation studies. The DNA binding constants for complexes (1), (2) and (3) were determined to 2.2×10(3), 1.3×10(4) and 8.6×10(4)M(-1) respectively. The experimental results suggest that these complexes interact with DNA through groove-binding mode. The photo induced cleavage studies shows that the complexes possess photonuclease property against pUC19 DNA under UV-Visible irradiation via a mechanistic pathway involving formation of singlet oxygen as the reactive species. Antimicrobial photodynamic therapy was studied using photodynamic antimicrobial chemotherapy (PACT) assay against Escherichiacoli and all complexes exhibited significant reduction in bacterial growth on photoirradiation.
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Affiliation(s)
- C N Sudhamani
- Department of Studies and Research in Industrial Chemistry, School of Chemical Sciences, Kuvempu University, Shankaraghatta 577 451, India
| | - H S Bhojya Naik
- Department of Studies and Research in Industrial Chemistry, School of Chemical Sciences, Kuvempu University, Shankaraghatta 577 451, India.
| | - K R Sangeetha Gowda
- Department of Studies and Research in Industrial Chemistry, School of Chemical Sciences, Kuvempu University, Shankaraghatta 577 451, India
| | - M Giridhar
- Department of Studies and Research in Industrial Chemistry, School of Chemical Sciences, Kuvempu University, Shankaraghatta 577 451, India
| | - D Girija
- Department of Studies and Research in Industrial Chemistry, School of Chemical Sciences, Kuvempu University, Shankaraghatta 577 451, India
| | - P N Prashanth Kumar
- Department of Studies and Research in Industrial Chemistry, School of Chemical Sciences, Kuvempu University, Shankaraghatta 577 451, India
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Synthesis and characterization of cobalt(II), nickel(II) and copper(II)-based potential photosensitizers: Evaluation of their DNA binding profile, cleavage and photocytotoxicity. Inorganica Chim Acta 2015. [DOI: 10.1016/j.ica.2014.12.032] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Pradeepa SM, Bhojya Naik HS, Vinay Kumar B, Indira Priyadarsini K, Barik A, Ravikumar Naik TR, Prabhakara MC. Metal based photosensitizers of tetradentate Schiff base: promising role in anti-tumor activity through singlet oxygen generation mechanism. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 115:12-21. [PMID: 23831972 DOI: 10.1016/j.saa.2013.06.009] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2012] [Revised: 05/27/2013] [Accepted: 06/04/2013] [Indexed: 06/02/2023]
Abstract
In the present investigation, a Schiff base N'(1),N'(3)-bis[(Z)-(2-hydroxynapthyl)methylidene]benzene-1,3-dicarbodihydrazide (L1) and its Co(II), Ni(II) and Cu(II) complexes have been synthesized and characterized as novel photosensitizing agents for photodynamic therapy (PDT). The interaction of these complexes with calf thymus DNA (CT DNA) has been explored using absorption, thermal denaturation and viscometric studies. The experimental results revealed that Co(II) and Ni(II) complexes on binding to CT DNA imply a covalent mode, most possibly involving guanine N7 nitrogen of DNA, with an intrinsic binding constant Kb of 4.5×10(4)M(-1) and 4.2×10(4)M(-1), respectively. However, interestingly, the Cu(II) complex is involved in the surface binding to minor groove via phosphate backbone of DNA double helix with an intrinsic binding constant Kb of 5.7×10(4)M(-1). The Co(II), Ni(II) and Cu(II) complexes are active in cleaving supercoiled (SC) pUC19 DNA on photoexposure to UV-visible light of 365nm, through (1)O2 generation with quantum yields of 0.28, 0.25 and 0.30, respectively. Further, these complexes are cytotoxic in A549 lung cancer cells, showing an enhancement of cytotoxicity upon light irradiation.
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Affiliation(s)
- S M Pradeepa
- Department of Studies and Research in Industrial Chemistry, Kuvempu University, Shankaraghatta 577 451, Shimoga, India
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Pradeepa SM, Bhojya Naik HS, Vinay Kumar B, Indira Priyadarsini K, Barik A, Ravikumar Naik TR. Cobalt(II), Nickel(II) and Copper(II) complexes of a tetradentate Schiff base as photosensitizers: Quantum yield of 1O2 generation and its promising role in anti-tumor activity. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 101:132-139. [PMID: 23099171 DOI: 10.1016/j.saa.2012.09.062] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2012] [Revised: 09/07/2012] [Accepted: 09/20/2012] [Indexed: 06/01/2023]
Abstract
In the present investigation, a Schiff base N'1,N'3-bis[(E)-(5-bromo-2-hydroxyphenyl)methylidene]benzene-1,3-dicarbohydrazide and its metal complexes have been synthesized and characterized. The DNA-binding studies were performed using absorption spectroscopy, emission spectra, viscosity measurements and thermal denatuaration studies. The experimental evidence indicated that, the Co(II), Ni(II) and Cu(II) complexes interact with calf thymus DNA through intercalation with an intrinsic binding constant Kb of 2.6×10(4) M(-1), 5.7×10(4) M(-1) and 4.5×10(4) M(-1), respectively and they exhibited potent photodamage abilities on pUC19 DNA, through singlet oxygen generation with quantum yields of 0.32, 0.27 and 0.30 respectively. The cytotoxic activity of the complexes resulted that they act as a potent photosensitizers for photochemical reactions.
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Affiliation(s)
- S M Pradeepa
- Department of Studies and Research in Industrial Chemistry, Kuvempu University, Shankaraghatta 577 451, Shimoga, India
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