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Inclusion Complexes of Naringenin in Dimethylated and Permethylated β-Cyclodextrins: Crystal Structures and Molecular Dynamics Studies. CRYSTALS 2019. [DOI: 10.3390/cryst10010010] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The crystal structures of the inclusion complexes of naringenin in dimethylated and permethylated β-cyclodextrin (DM-β-CD and TM-β-CD) were determined and extensively analyzed. Naringenin is found with its 4-hydroxyphenyl residue fully immersed in the DM-β-CD cavity and its chromone group protruding from the narrow rim of the open-cone shaped host. The naringenin/DM-β-CD complex units are packed in a ‘herring bone’ fashion. In the case of naringenin/TM-β-CD, the complex units are arranged in a cage-type mode, the guest naringenin is partially encapsulated in the cavity of the closed-cone shaped host, with its chromone group laying equatorially and its 4-hydroxyphenyl protruding extensively from the wide rim of the host. Furthermore, the crystallographically-determined coordinates of both complexes were employed for Molecular Dynaimics simulations in explicit water solvent and in the absence of crystal contacts. The trajectories showed that naringenin rapidly penetrates the open narrow rim of DM-β-CD but not the closed narrow rim of TM-β-CD. Thus, in the latter case, the chromone group of naringenin is accommodated shallowly in the wide rim of the host, tethered via hydrogen bonds to the secondary methoxy groups of the host. Finally, a significantly higher binding affinity for naringenin in DM-β-CD than TM-β-CD was estimated by Molecular Mechanics/Generalized Born Surface Area calculations.
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Ceborska M. Structural investigation of solid state host/guest complexes of native cyclodextrins with monoterpenes and their simple derivatives. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.03.114] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Ceborska M. Structural investigation of the β-cyclodextrin complexes with linalool and isopinocampheol – Influence of monoterpenes cyclicity on the host–guest stoichiometry. Chem Phys Lett 2016. [DOI: 10.1016/j.cplett.2016.03.051] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Ceborska M, Asztemborska M, Luboradzki R, Lipkowski J. Interactions with β-cyclodextrin as a way for encapsulation and separation of camphene and fenchene. Carbohydr Polym 2013; 91:110-4. [DOI: 10.1016/j.carbpol.2012.07.072] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2011] [Revised: 05/17/2012] [Accepted: 07/27/2012] [Indexed: 11/25/2022]
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Rare ‘head-to-tail’ arrangement of guest molecules in the inclusion complexes of (+)- and (−)-menthol with β-cyclodextrin. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.10.010] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Avilés Moreno JR, Partal Ureña F, López González JJ. Hydrogen bonding network in a chiral alcohol: (1R,2S,5R)-(−)-menthol. Conformational preference studied by IR–Raman–VCD spectroscopies and quantum chemical calculations. Struct Chem 2012. [DOI: 10.1007/s11224-012-0118-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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Amharar Y, Grandeury A, Sanselme M, Petit S, Coquerel G. A Hybrid Mechanism in Chiral Discrimination Induced by Crystallization of Supramolecular Compounds. J Phys Chem B 2012; 116:6027-40. [DOI: 10.1021/jp301708v] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Youness Amharar
- Unité de Cristallogenèse, Sciences et
Méthodes Séparatives (SMS) - UPRES EA 3233, IRCOF IMR
4114, Université de ROUEN, Rue Tesnière,
F-76821 Mont Saint-Aignan Cedex, France
| | - Arnaud Grandeury
- Unité de Cristallogenèse, Sciences et
Méthodes Séparatives (SMS) - UPRES EA 3233, IRCOF IMR
4114, Université de ROUEN, Rue Tesnière,
F-76821 Mont Saint-Aignan Cedex, France
| | - Morgane Sanselme
- Unité de Cristallogenèse, Sciences et
Méthodes Séparatives (SMS) - UPRES EA 3233, IRCOF IMR
4114, Université de ROUEN, Rue Tesnière,
F-76821 Mont Saint-Aignan Cedex, France
| | - Samuel Petit
- Unité de Cristallogenèse, Sciences et
Méthodes Séparatives (SMS) - UPRES EA 3233, IRCOF IMR
4114, Université de ROUEN, Rue Tesnière,
F-76821 Mont Saint-Aignan Cedex, France
| | - Gérard Coquerel
- Unité de Cristallogenèse, Sciences et
Méthodes Séparatives (SMS) - UPRES EA 3233, IRCOF IMR
4114, Université de ROUEN, Rue Tesnière,
F-76821 Mont Saint-Aignan Cedex, France
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Uyar T, Hacaloglu J, Besenbacher F. Electrospun polystyrene fibers containing high temperature stable volatile fragrance/flavor facilitated by cyclodextrin inclusion complexes. REACT FUNCT POLYM 2009. [DOI: 10.1016/j.reactfunctpolym.2008.12.012] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Sánchez-Ruiz X, Alvarez-Larena A, Jaime C, Piniella JF, Redondo J, Virgili A, Sanchez-Ferrando F, Germain G, Baert F. Molecular and Crystal Structure of the 1:1 Complex of Adamantanone with β-Cyclodextrin. Supramol Chem 2008. [DOI: 10.1080/10610279908559288] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
| | - A. Alvarez-Larena
- b Departament de Geologia , Universitat Autònoma de Barcelona , 08193, Bellaterra, Spain
| | | | - J. F. Piniella
- b Departament de Geologia , Universitat Autònoma de Barcelona , 08193, Bellaterra, Spain
| | | | | | | | - G. Germain
- c Unité de Chimie Physique Moléculaire et de Cristallographie , Université de Louvain , B1348, Louvain la Neuve, Belgium
| | - F. Baert
- d Laboratoired de Physique Fondamentale , Bldg. P5 Université de Lille 159650, Villeneuve d'Asq, France
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Caira MR, Giordano F, Vilakazi SL. X-ray Structure and Thermal Properties of a 1:1 Inclusion Complex Between Permethylated β-Cyclodextrin and Psoralen. Supramol Chem 2007. [DOI: 10.1080/10610270410001713321] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Mino R. Caira
- a Department of Chemistry , University of Cape Town , 7701, Rondebosch, South Africa
| | - Ferdinando Giordano
- b Dipartimento Farmaceutico , Universita' di Parma , Parco Area delle Scienze, 43100, Parma, Italy
| | - Sibulelo L. Vilakazi
- a Department of Chemistry , University of Cape Town , 7701, Rondebosch, South Africa
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Affiliation(s)
- Sanyo Hamai
- a Department of Chemistry , College of Education, Akita University , Tegata Gakuen-machi 1-1, Akita, 010-8502, Japan
| | - Kazuyuki Hori
- b Akita Research Institute of Food and Brewing , 4-26, Sanuki, Araya-machi, Akita, 010-1623, Japan
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Caira MR, Bourne SA, Vilakazi SL, Reddy L. Inclusion of Anesthetics in Cyclodextrins: Structural Investigation of Solid Inclusion Complexes of Butamben. Supramol Chem 2006. [DOI: 10.1080/1061027042000204038] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Mino R. Caira
- a Department of Chemistry , University of Cape Town , 7701, Rondebosch, South Africa
| | - Susan A. Bourne
- a Department of Chemistry , University of Cape Town , 7701, Rondebosch, South Africa
| | - Sibulelo L. Vilakazi
- a Department of Chemistry , University of Cape Town , 7701, Rondebosch, South Africa
| | - Laveshni Reddy
- a Department of Chemistry , University of Cape Town , 7701, Rondebosch, South Africa
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Mieusset JL, Krois D, Pacar M, Brecker L, Giester G, Brinker UH. Supramolecular Recognition and Structural Elucidation of Inclusion Complexes of an Achiral Carbene Precursor in β- and Permethylated β-Cyclodextrin. Org Lett 2004; 6:1967-70. [PMID: 15176795 DOI: 10.1021/ol049478o] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
[structure: see text] Inclusion of achiral carbene precursor endo-8-azibicyclo[3.2.1]octan-3-ol (1) in chiral beta-cyclodextrin (7-Cy) and tri-O-methyl-beta-cyclodextrin (TRIMEB) leads to 1:1 complexes 1@7-Cy and 1@TRIMEB, respectively. The combined methods of induced circular dichroism, NMR spectroscopy, and X-ray structure determination were employed for the first time for structural elucidation of the complexes in solution and the solid state. Significantly different orientations of 1 were observed. Compared with 1@7-Cy, 1@TRIMEB exhibits a different guest orientation and an association constant one-twentieth lower.
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Affiliation(s)
- Jean-Luc Mieusset
- Institut für Organische Chemie, Universität Wien, Währinger Strasse 38, A-1090 Wien, Austria
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Tsorteki F, Bethanis K, Mentzafos D. Structure of the inclusion complexes of heptakis(2,3,6-tri-O-methyl)-β-cyclodextrin with indole-3-butyric acid and 2,4-dichlorophenoxyacetic acid. Carbohydr Res 2004; 339:233-40. [PMID: 14698881 DOI: 10.1016/j.carres.2003.10.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
The crystal structures of the complexes of heptakis(2,3,6-tri-O-methyl)-beta-cyclodextrin with indole-3-butyric acid and with 2,4-dichlorophenoxyacetic acid were studied by X-ray diffraction. The complexes crystallize in the monoclinic P2(1) space group. The host molecules are elliptically puckered and stacked along the a crystal axis, in a head-to-tail fashion, forming columns. One primary methoxy group of the host molecule of the complex with indole-3-butyric acid has the unusual trans-gauche conformation for permethylated CDs. All the secondary O-3-CH(3) methoxy groups, some secondary O-2-CH(3) and some primary methoxy groups pointing inwards the cavity enclose the indole or the 2,4-dichlorophenoxy moieties of the guest molecules inside the cavity, while the chains of the guests protrude between two adjacent host molecules of the columns. The mean planes of the indole and 2,4-dichlorophenoxy moieties of the guests are nearly perpendicular to the mean planes of the elliptical heptagons defined by the O-4n atoms of the hosts. The carboxyl group of the guests form hydrogen bonds with oxygen atoms of the host molecules or with the water molecules found in the space between the complexes of the same column.
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Affiliation(s)
- Frantzeska Tsorteki
- Physics Laboratory, Agricultural University of Athens, Iera Odos 75, GR-11855, Athens, Greece
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Grandeury A, Petit S, Gouhier G, Agasse V, Coquerel G. Enantioseparation of 1-(p-bromophenyl)ethanol by crystallization of host–guest complexes with permethylated β-cyclodextrin: crystal structures and mechanisms of chiral recognition. ACTA ACUST UNITED AC 2003. [DOI: 10.1016/s0957-4166(03)00360-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Rigidity versus flexibility. A review of experimental and theoretical studies pertaining to the cyclodextrin nonrigidity. J Mol Struct 2002. [DOI: 10.1016/s0022-2860(02)00236-3] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Cardinaël P, Peulon-Agasse V, Coquerel G, Combret Y, Combret JC. Quantitative determination of straight and cyclic hydrocarbons in crystallized permethylated-β-cyclodextrin inclusion complexes by static headspace-gas chromatography. J Sep Sci 2001. [DOI: 10.1002/1615-9314(20010201)24:2<109::aid-jssc109>3.0.co;2-t] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Affiliation(s)
- Kazuaki Harata
- Biomolecules Department, National Institute of Bioscience and Human-Technology, 1-1 Higashi, Tsukuba, Ibaraki 305, Japan
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