Transformation of microflora during degradation of gaseous toluene in a biofilter detected using PCR-DGGE

Spatial distribution characteristics and degradation mechanism of microorganisms in n-hexadecane contaminated vadose zone

The damage caused by petroleum hydrocarbon pollution to soil and groundwater environment is becoming increasingly significant. The vadose zone is the only way for petroleum hydrocarbon pollutants to leak from surface into groundwater. The spatial distribution characteristics of indigenous microorganisms in vadose zone, considering presence of capillary zones, have rarely been reported. To explore the spatial distribution characteristics of indigenous microorganisms in vadose zone contaminated by petroleum hydrocarbons, a one-dimensional column migration experiment was conducted using n-hexadecane as characteristic pollutant. Soil samples were collected periodically from different heights during experiment. Corresponding environmental factors were monitored online. The microbial community structure and spatial distribution characteristics of the cumulative relative abundance were systematically analyzed using 16S rRNA sequencing. In addition, the microbial degradation mechanism of n-hexadecane was analyzed using metabolomics. The results showed that presence of capillary zone had a strong retarding effect on n-hexadecane infiltration. Leaked pollutants were mainly concentrated in areas with strong capillary action. Infiltration and displacement of NAPL-phase pollutants were major driving force for change in moisture content (θ) and electric conductivity (EC) in vadose zone. The degradation by microorganisms results in a downward trend in potential of hydrogen (pH) and oxidation-reduction potential (ORP). Five petroleum hydrocarbon-degrading bacterial phyla and 11 degradable straight-chain alkane bacterial genera were detected. Microbial degradation was strong in the area near edge of capillary zone and locations of pollutant accumulation. Mainly Sphingomonas and Nocardioides bacteria were involved in microbial degradation of n-hexadecane. Single-end oxidation involved microbial degradation of n-hexadecane (C16H34). The oxygen consumed, hexadecanoic acid (C16H32O2) produced during this process, and release of hydrogen ions (H+) were the driving factors for reduction of ORP and pH. The vadose zone in this study considered presence of capillary zone, which was more in line with actual contaminated site conditions compared with previous studies. This study systematically elucidated vertical distribution characteristics of petroleum hydrocarbon pollutants and spatiotemporal variation characteristics of indigenous microorganisms in vadose zone considered presence of capillary zone. In addition, the n-hexadecane degradation mechanism was elucidated using metabolomics. This study provides theoretical support for development of natural attenuation remediation measures for petroleum-hydrocarbon-contaminated soil and groundwater.

Response relationship of environmental factors caused by toluene concentration during leaching of capillary zone

Due to the leaching of capillary water, the petroleum pollutants initially trapped in vadose zone may migrate to lower aquifer, thus increasing the risk of groundwater pollution. In order to explore the effect of capillary leaching on toluene-contaminated soil and the relationship between toluene concentration (TC) and environmental factors (EFs) during the leaching process, the sterilized and non-sterilized soil column experiments were designed. The EFs were used to estimate TC. The results showed that the difference between leaching and volatilization rates directly determined the changing trend of toluene concentration in capillary water. The toluene concentration in the medium always showed decreasing trend due to leaching. The indigenous microbial community structure of the non-sterilized soil column was analyzed by 16S rRNA sequencing. It was found that indigenous microorganisms could degrade toluene after 33.0 days of acclimatation. The microbial population was dominated by bacteria, among them the Ellin6055 strain and Pseudomonas, Pseudoxanthomonas, Cupriavidus, Bdellovibrio, Sphingobium, Phenylobacterium, Ramlibacter, Bradyrhizobium, Shinella genera. The Pseudomonas was the most crucial bacterial genus that degraded toluene. Indigenous microbial degradation was the fundamental reason for strong response relationship. Furthermore, we suggested a relationship of function between environmental factors (pH, DO, ORP) and time (t) for toluene attenuation: C₀+ln(e^Atα^Bγ^Cβ)=C_Toluene, (α, β, γ represent the pH, DO, and ORP in leaching capillary water, respectively; A, B, and C represent undetermined coefficients), and the fitting coefficient R² > 0.950. This relationship can only characterize the attenuation process of capillary zone leaching on toluene. However, it may still be utilized to give a theoretical foundation for understanding the dynamic of pollutant concentration change processes under specific environmental factors.

Metabarcoding profiling of microbial diversity associated with trout fish farming

Earthy and musty off-flavors are routinely observed in farmed trout worldwide. The microbial association to the production of those off-flavors was previously reported. The current manuscript aimed to catalog the microbial enrichment (eukaryotes and prokaryotes) in semi-intensive aquaculture freshwater sources that might influence the trout aquaculture quality production. The 16S rRNA and ITS metabarcoding analyses were applied on the inflow- and pond-water samples from trout farms previously recorded a malodor fish products and located alongside Moosach and Sempt Rivers in Bavaria province, Germany. The results showed that more than 99% of the detected prokaryotic OTUs (Operational Taxonomic Unit identification) were bacteria as of ~ 75.57% were Proteobacteria, and ~ 14.4% were Bacteroidetes. Meanwhile, 118 out of 233 of the eukaryotic OTUs were known species. Of these, ~ 45% were plant pathogens, and ~ 28% were mushroom/yeasts. Based on the comparative analysis between inflow- and pond-water samples, several pro- and eukaryotic microorganisms that affect the trout aquaculture water quality and industry have been detected, including the malodor-producing microorganisms, e.g., Cyanobacteria and Actinobacteria, along with fish infectious microorganisms, e.g., Chilodonella cyprinid, Metschnikowia bicuspidate. Additionally, the effect of the human- and industrial-related activities around the sampling area on the microbiota of the investigated farms were highlighted.

Influence of phosphorus and trace metals in biofilters treating gaseous VOCs using a novel irrigation system

Although the appropriate supply of nutrients has been extensively researched, more information is required on the effects of nutrients in treating gaseous volatile organic compounds (VOCs) in biofiltration. In this study, the effects of phosphorous and trace metals on gaseous toluene and methyl ethyl ketone (MEK) removal were investigated. The transfer of nutrients from the irrigation liquid to the packed bed, and the consumption and holding amount of nutrients in the packing material were observed during biofiltration. Under conditions of 20-24 s of empty bed residence time, MEK removal was 95% or more in all conditions of the biofiltration reactors, whereas toluene removal was affected by the operating conditions of the reactors. Consumption ratio of phosphorus to carbon was from 1.7 × 10^-4 to 1.1 × 10^-3 in the steady state of VOC removal under the conditions of this study. When gaseous VOC treatment was restarted after nine days of shutdown, a significant decline in toluene removal was observed by the reactor in which phosphorus supply was approximately one fifth of the amount in another reactor. Two types of irrigation systems, soaking and spraying, were compared and soaking irrigation achieved a more even distribution of nutrients held inside the packed bed. Soaking irrigation was expected to lead to higher VOC removal capacity by this distribution effect of nutrients, but toluene removal in the reactor with this irrigation was lower than that in the reactor with spraying irrigation. One of the possible reasons for this was the inhibition of nutrients transfer in the bottom part of the reactor. The trend of transfer in all ingredients from the irrigation liquid to the packed bed was synchronized on the whole; however, this transfer relatively tended to be high in nitrate and sodium and low in ammonium and phosphate. Implications: A major concern about using biofiltration systems to treat VOCs is the uncertainty regarding the appropriate nutrient supply to the filter bed to preserve microbial activity. This study showed that all the elements, except nitrogen, were retained sufficiently in the filter bed when a proper composition of nutrient solution was used for irrigation; however, phosphate addition may be needed when restarting a reactor from a prolonged period of shutdown. Distinct differences in the amount of transfer to the filter bed for different ingredients are probable, and may have to be taken into account when operating biofiltration reactors.

Removal of toluene vapor in the absence and presence of a quorum-sensing molecule in a biotrickling filter and microbial composition shift

Toluene is highly toxic and mutagenic, and it is generally used as an industrial solvent. Thus, toluene removal from air is necessary. To solve the problem of reducing high toluene concentrations with a short gas retention time (GRT), a quorum-sensing molecule [N-(3-oxododecanoyl)-L-homoserine lactone] (OHL) was added to a biotrickling filter (BTF). In this study, a BTF was used to treat synthetic and natural waste gases containing toluene. An extensive analysis was performed to understand the removal efficiency, removal characteristics, and bacterial community of the BTF. The addition of 20 μM OHL to the BTF significantly improved toluene removal, and more than 99.2% toluene removal was achieved at a GRT of 0.5 min when natural waste gas containing toluene (590-1020 ppm or 2.21-3.83 g m^-3) was introduced. The maximum inlet load for toluene was 337.9 g m^-3 h^-1. Moreover, the BTF exhibited satisfactory adaptability to shock loading and shutdown operations. Pseudomonadaceae (33.0%) and Comamonadaceae (26.3%) were predominant bacteria in the system after a 98-day operation. These bacteria were responsible for toluene degradation. The optimal moisture content and low pressure drop for system operations demonstrated that the BTF was energy and cost efficient. Therefore, processing through a BTF with OHL is a favorable technique for toluene treatment.

Dynamic membrane bioreactor (DMBR) for the treatment of landfill leachate; bioreactor's performance and metagenomic insights into microbial community evolution

The use of dynamic membranes as a low-cost alternative for conventional membrane for the treatment of landfill leachate (LFL) was investigated in this study. For this purpose a lab-scale, submerged pre-anoxic and post-aerobic bioreactor configuration was used with nylon mesh as dynamic membrane support. The study was conducted at ambient temperature and LFL was fed to the bioreactor in gradually increasing concentration mixed with tap water (from 20% to 100%). The results of this study demonstrated that lower mesh pore size of 52 μm achieved better results in terms of solid-liquid separation performance (turbidity <10 NTU) of the formed dynamic membrane layer as compared to 200 and 85 μm meshes while treating LFL. Consistently high NH₄⁺-N conversion efficiency of more than 98% was achieved under all nitrogen loading conditions, showing effectiveness of the formed dynamic membrane in retaining slow growing nitrifying species. Total nitrogen removal reached more than 90% however, the denitrification activity showed a fluctuating profile and found to be inhibited by elevated concentrations of free nitrous acid and NO₂^--N at low pH values inside the anoxic bioreactor. A detailed metagenomic analysis allowed a taxonomic investigation over time and revealed the potential biochemical pathways involved in NH₄⁺-N conversion. This study led to the identification of a dynamic system in which nitrite concentration is determined by the contribution of NH₄⁺ oxidizers (Nitrosomonas), and by a competition between nitrite oxidizers (Nitrospira and Nitrobacter) and reducers (Thauera).

Chlortetracycline removal by using hydrogen based membrane biofilm reactor

In the last years, increasing attention has been paid on the presence of antibiotics in aqueous environments due to their ecological damage and potential adverse effects on organisms. Membrane biofilm reactors (MBfR) have been gained a significant popularity as an advanced wastewater treatment technology in removing of organic micro-pollutants. In this study, the performance of H₂-MBfR for simultaneous removal of nitrate and chlortetracycline, formation of transformation products and community analysis of the biofilm grown on the gas permeable hollow fiber membranes was evaluated by considering effect of the hydraulic retention time, surface loadings of target pollutants and H₂ pressure. The results showed that the simultaneous chlortetracycline (96%) and nitrate removal (99%) took placed successfully under the conditions of 5h HRT and 2psi H₂ pressure. It has been determined that the main elimination process was biodegradation and Betaproteobacteria species was responsible for chlortetracycline degradation.

Identification of novel toluene monooxygenase genes in a hydrocarbon-polluted sediment using sequence- and function-based screening of metagenomic libraries

The microbial potential for toluene degradation within sediments from a tar oil-contaminated site in Flingern, Germany, was assessed using a metagenomic approach. High molecular weight environmental DNA from contaminated sediments was extracted, purified, and cloned into fosmid and BAC vectors and transformed into Escherichia coli. The fosmid library was screened by hybridization with a PCR amplicon of the α-subunit of the toluene 4-monooxygenase gene to identify genes and pathways encoding toluene degradation. Fourteen clones were recovered from the fosmid library, among which 13 were highly divergent from known tmoA genes and several had the closest relatives among Acinetobacter species. The BAC library was transferred to the heterologous hosts Cupriavidus metallidurans (phylum Proteobacteria) and Edaphobacter aggregans (phylum Acidobacteria). The resulting libraries were screened for expression of toluene degradation in the non-degradative hosts. From expression in C. metallidurans, three novel toluene monooxygenase-encoding operons were identified that were located on IncP1 plasmids. The E. aggregans-hosted BAC library led to the isolation of a cloned genetic locus putatively derived from an Acidobacteria taxon that contained genes involved in aerobic and anaerobic toluene degradation. These data suggest the important role of plasmids in the spread of toluene degradative capacity and indicate putative novel tmoA genes present in this hydrocarbon-polluted environment.

Performance and bacterial population composition of an n-hexane degrading biofilter working under fluctuating conditions

In this work, several conditions of pH and inlet load (IL) were applied to a scale laboratory biofilter treating n-hexane vapors during 143 days. During the first 79 days of operation (period 1, P1), the system was fed with neutral pH mineral medium (MM) and the IL was progressively decreased from 177 to 16 g m(-3) h(-1). A maximum elimination capacity (EC) of 30 g m(-3) h(-1) was obtained at an IL of 176.9 ± 9.8 g m(-3) h(-1). During the following 64 days (period 2, P2), acidic conditions were induced by feeding the biofilter with acidic buffer solution and pH 4 MM in order to evaluate the effect of bacterial community changes on EC. Within the acidic period, a maximum EC of 54 g m(-3) h(-1) (IL 132.3 ± 13 g m(-3) h(-1)) was achieved. Sequence analysis of 16S rDNA genes amplified from the consortium revealed the presence of Sphingobacteria, Actinobacteria, and α-, β- and γ-Proteobacteria. An Actinobacteria of the Mycobacterium genus had presence throughout the whole experiment of biofiltration showing resistance to fluctuating pH and IL conditions. Batch tests confirm the bacterial predominance and a negligible contribution of fungi in the degradation of n-hexane.