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García-Meseguer AJ, Villastrigo A, Mirón-Gatón JM, Millán A, Velasco J, Muñoz I. Novel Microsatellite Loci, Cross-Species Validation of Multiplex Assays, and By-Catch Mitochondrial Genomes on Ochthebius Beetles from Supratidal Rockpools. INSECTS 2023; 14:881. [PMID: 37999080 PMCID: PMC10672297 DOI: 10.3390/insects14110881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/06/2023] [Accepted: 11/13/2023] [Indexed: 11/25/2023]
Abstract
Here we focus on designing, for the first time, microsatellite markers for evolutionary and ecological research on aquatic beetles from the genus Ochthebius (Coleoptera, Hydraenidae). Some of these non-model species, with high cryptic diversity, exclusively inhabit supratidal rockpools, extreme and highly dynamic habitats with important anthropogenic threats. We analysed 15 individuals of four species (O. lejolisii, O. subinteger, O. celatus, and O. quadricollis) across 10 localities from the Mediterranean coasts of Spain and Malta. Using next-generation sequencing technology, two libraries were constructed to interpret the species of the two subgenera present consistently (Ochthebius s. str., O. quadricollis; and Cobalius, the rest of the species). Finally, 20 markers (10 for each subgenus) were obtained and successfully tested by cross-validation in the four species under study. As a by-catch, we could retrieve the complete mitochondrial genomes of O. lejolisii, O. quadricollis, and O. subinteger. Interestingly, the mitochondrial genome of O. quadricollis exhibited high genetic variability compared to already published data. The novel SSR panels and mitochondrial genomes for Ochthebius will be valuable in future research on species identification, diversity, genetic structure, and population connectivity in highly dynamic and threatened habitats such as supratidal coastal rockpools.
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Affiliation(s)
| | - Adrián Villastrigo
- Division of Entomology, SNSB-Zoologische Staatssammlung München, 81247 Munich, Germany;
| | - Juana María Mirón-Gatón
- Ecology and Hydrology Department, University of Murcia, 30100 Murcia, Spain; (A.J.G.-M.); (J.M.M.-G.); (A.M.)
| | - Andrés Millán
- Ecology and Hydrology Department, University of Murcia, 30100 Murcia, Spain; (A.J.G.-M.); (J.M.M.-G.); (A.M.)
| | - Josefa Velasco
- Ecology and Hydrology Department, University of Murcia, 30100 Murcia, Spain; (A.J.G.-M.); (J.M.M.-G.); (A.M.)
| | - Irene Muñoz
- Department of Biodiversity, Ecology and Evolution, Complutense University of Madrid, 28040 Madrid, Spain;
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Sabatelli S, Ruspantini P, Cardoli P, Audisio P. Underestimated diversity: Cryptic species and phylogenetic relationships in the subgenus Cobalius (Coleoptera: Hydraenidae) from marine rockpools. Mol Phylogenet Evol 2021; 163:107243. [PMID: 34224850 DOI: 10.1016/j.ympev.2021.107243] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 05/30/2021] [Accepted: 06/29/2021] [Indexed: 11/19/2022]
Abstract
Marine rockpools are isolated patches of habitat in the supratidal environment (the so-called splash zone), at the transition between sea and land, found along the rocky shores worldwide and characterized by harsh conditions for life. Nonetheless, few specialized invertebrates successfully colonized this peculiar environment. Among them several members of the water beetles Ochthebius Leach, 1815, subgenus Cobalius Rey (1886), which are found almost exclusively in supratidal and upper-most intertidal marine rockpools from the eastern Atlantic Ocean (Cape Verde, Canary Islands and Morocco, Madeira, Azores) throughout the whole Mediterranean basin. The subgenus Cobalius before 2020 was considered to include ten valid species, based on morphological differences. In late 2020, four additional new species were described. However, recent molecular phylogenetic studies have uncovered further cryptic diversity suggesting the presence of multiple undetected species within this group, highlighting that the species boundaries remain unclear and systematics and taxonomy are in need of revision. In this study we provide a molecular phylogeny based on DNA sequence data from mitochondrial and nuclear genes obtained from ten described species belonging to the subgenus Cobalius, and extensive taxon sampling, in order to better understand the phylogenetic relationships within this genus and to infer the biogeographic processes behind its diversification. We also used a molecular clock to define a time window for diversification of distinct clades within the subgenus, and explore aspects of its evolutionary history. Finally, we used three species delimitation methods (PTP, GMYC and ABGD) to clarify taxonomy and validate species boundaries. Our phylogenetic and biogeographic results identified sixteen independent lineages grouped in four main clades and the possible origin of Cobalius was estimated to be in the Early Miocene (~22 Mya) in W Mediterranean area. Moreover, species delimitation methods suggest there are between 16 and 24 putative species, most of them diverged during the Late Miocene, Pliocene and Pleistocene (6.0-0.11 Mya).
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Affiliation(s)
- Simone Sabatelli
- Department of Biology and Biotechnology "Charles Darwin", Sapienza University of Rome, Viale dell'Università 32, 00186 Roma, Italy.
| | - Paola Ruspantini
- Department of Biology and Biotechnology "Charles Darwin", Sapienza University of Rome, Viale dell'Università 32, 00186 Roma, Italy
| | - Paolo Cardoli
- Department of Biology and Biotechnology "Charles Darwin", Sapienza University of Rome, Viale dell'Università 32, 00186 Roma, Italy
| | - Paolo Audisio
- Department of Biology and Biotechnology "Charles Darwin", Sapienza University of Rome, Viale dell'Università 32, 00186 Roma, Italy
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Audisio P, Alonso Zarazaga MA, Slipinski A, Nilsson A, Jelínek J, Taglianti AV, Turco F, Otero C, Canepari C, Kral D, Liberti G, Sama G, Nardi G, Löbl I, Horak J, Kolibac J, Háva J, Sapiejewski M, Jäch M, Bologna MA, Biondi M, Nikitsky NB, Mazzoldi P, Zahradnik P, Wegrzynowicz P, Constantin R, Gerstmeier R, Zhantiev R, Fattorini S, Tomaszewska W, Rücker WH, Vazquez-Albalate X, Cassola F, Angelini F, Johnson C, Schawaller W, Regalin R, Baviera C, Rocchi S, Cianferoni F, Beenen R, Schmitt M, Sassi D, Kippenberg H, Zampetti MF, Trizzino M, Chiari S, Carpaneto GM, Sabatelli S, de Jong Y. Fauna Europaea: Coleoptera 2 (excl. series Elateriformia, Scarabaeiformia, Staphyliniformia and superfamily Curculionoidea). Biodivers Data J 2015; 3:e4750. [PMID: 25892924 PMCID: PMC4399155 DOI: 10.3897/bdj.3.e4750] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2015] [Accepted: 03/31/2015] [Indexed: 11/16/2022] Open
Abstract
Fauna Europaea provides a public web-service with an index of scientific names (including synonyms) of all living European land and freshwater animals, their geographical distribution at country level (up to the Urals, excluding the Caucasus region), and some additional information. The Fauna Europaea project covers about 230,000 taxonomic names, including 130,000 accepted species and 14,000 accepted subspecies, which is much more than the originally projected number of 100,000 species. This represents a huge effort by more than 400 contributing specialists throughout Europe and is a unique (standard) reference suitable for many users in science, government, industry, nature conservation and education. Coleoptera represent a huge assemblage of holometabolous insects, including as a whole more than 200 recognized families and some 400,000 described species worldwide. Basic information is summarized on their biology, ecology, economic relevance, and estimated number of undescribed species worldwide. Little less than 30,000 species are listed from Europe. The Coleoptera 2 section of the Fauna Europaea database (Archostemata, Myxophaga, Adephaga and Polyphaga excl. the series Elateriformia, Scarabaeiformia, Staphyliniformia and the superfamily Curculionoidea) encompasses 80 families (according to the previously accepted family-level systematic framework) and approximately 13,000 species. Tabulations included a complete list of the families dealt with, the number of species in each, the names of all involved specialists, and, when possible, an estimate of the gaps in terms of total number of species at an European level. A list of some recent useful references is appended. Most families included in the Coleoptera 2 Section have been updated in the most recent release of the Fauna Europaea index, or are ready to be updated as soon as the FaEu data management environment completes its migration from Zoological Museum Amsterdam to Berlin Museum für Naturkunde.
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Affiliation(s)
- Paolo Audisio
- Sapienza Rome University, Department of Biology and Biotechnologies 'C. Darwin', Rome, Italy
| | | | | | | | | | - Augusto Vigna Taglianti
- Sapienza Rome University, Department of Biology and Biotechnologies 'C. Darwin', Rome, Italy
| | | | - Carlos Otero
- Departamento de Biología Animal, Santiago de Compostela, Spain
| | | | - David Kral
- Charles University, Prague, Czech Republic
| | | | | | - Gianluca Nardi
- MiPAAF, Corpo Forestale dello Stato, Centro Nazionale per lo Studio e la Conservazione della Biodiversità Forestale “Bosco Fontana” di Verona, Sede di Bosco Fontana, Strada Mantova 29, I-46045, Marmirolo (MN), Italy
| | - Ivan Löbl
- Museum d'Histoire naturelle Geneve, Geneve, Switzerland
| | - Jan Horak
- K Hádku 1567, Dubeček, CZ-107 00 Praha 10, Prague, Czech Republic
| | | | - Jirí Háva
- Dermestidae World, Prague, Czech Republic
| | | | | | | | - Maurizio Biondi
- University of L`Aquila, Department of Health, Life and Environmental Sciences, L`Aquila - Coppito, Italy
| | | | | | - Petr Zahradnik
- Forestry and Game Management Research Institute, Praha, Czech Republic
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - Cosimo Baviera
- University of Messina, Department of Biological and Environmental Sciences, Messina, Italy
| | - Saverio Rocchi
- University of Florence, Natural History Museum, Zoological Section 'La Specola', Florence, Italy
| | - Fabio Cianferoni
- University of Florence, Natural History Museum, Zoological Section 'La Specola', Florence, Italy
- Institute of Agroenvironmental and Forest Biology, CNR - National Research Council of Italy, Monterotondo Scalo (Rome), Italy
| | - Ron Beenen
- Naturalis Biodiversity Center, Leiden, Netherlands
| | | | - David Sassi
- c/o Museo Civico di Storia Naturale, Milano, Italy
| | | | | | - Marco Trizzino
- Department of Genetics, University of Pennsylvania, Philadelphia, United States of America
| | - Stefano Chiari
- Sapienza Rome University, Department of Biology and Biotechnologies 'C. Darwin', Rome, Italy
| | | | - Simone Sabatelli
- Sapienza Rome University, Department of Biology and Biotechnologies 'C. Darwin', Rome, Italy
| | - Yde de Jong
- University of Eastern Finland, Joensuu, Finland
- University of Amsterdam - Faculty of Science, Amsterdam, Netherlands
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