1
|
Jeong JS, Kim HK, Park JS, Hwang HS, Kim I. Complete mitochondrial genome of the European common barnacle Perforatus perforatus Bruguière, 1789 (balanomorpha: balanidae). Mitochondrial DNA B Resour 2024; 9:823-827. [PMID: 38911522 PMCID: PMC11191835 DOI: 10.1080/23802359.2024.2368727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 06/11/2024] [Indexed: 06/25/2024] Open
Abstract
This study is the first to sequence the complete mitochondrial genome (mitogenome) of Perforatus perforatus Bruguière, 1789 (Balanomorpha: Balanidae). The 15,536-bp long P. perforatus mitogenome contained a typical set of animal mitochondrial genes, along with one control region. The P. perforatus mitogenome had an inverted gene block (trnP-ND4L-ND4-trnH-ND5-trnF) between trnS(gct) and trnT. This inverted gene block had been detected six species in three subfamilies of the Balanidae family (Balaninae, Acastinae and Megabalaninae), but our results show that it is also present in Concavinae, in which P. perforatus is included. The phylogenetic tree based on the concatenated sequences of the 13 protein-coding genes and two rRNA genes showed that P. perforatus is closely associated with Acasta sulcate and Balanus trigonus within Balanidae.
Collapse
Affiliation(s)
- Jun Seong Jeong
- Division of Genetic Resources, Honam National Institute of Biological Resources, Mokpo, Republic of Korea
| | - Hyun Kyong Kim
- Division of Zoology, Honam National Institute of Biological Resources, Mokpo, Republic of Korea
| | - Jeong Sun Park
- Department of Applied Biology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, Republic of Korea
| | - Hee-Seung Hwang
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA
| | - Iksoo Kim
- Department of Applied Biology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, Republic of Korea
| |
Collapse
|
2
|
The Mitochondrial Genome of the Globally Invasive Barnacle Megabalanus coccopoma Darwin 1854 (Crustacea: Balanomorpha): Rearrangement and Phylogenetic Consideration within Balanomorpha. DIVERSITY 2023. [DOI: 10.3390/d15010117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Megabalanus coccopoma (Darwin, 1854) is a globally invasive species in Balanomorpha (Crustacea). This species is a model organism for studying marine pollution and ecology. However, its mitogenome remains unknown. The mitogenome sequencing of M. coccopoma is completed in the present study. It has a 15,098 bp in length, including 13 protein-coding genes (PCGs), 2 ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), along with a putative regulatory area. A substantial A+T bias was observed in the genome composition (68.2%), along with a negative AT (0.82) and GC (−0.136) skew. Compared to the gene sequence of the ground model of pan-crustacea, 13 gene clusters (or genes), such as 10 tRNAs and 3 PCGs, were observed in a different order. This was in line with the previously observed large-scale gene rearrangements of Balanomorpha. Among the 37 genes, the gene cluster (M-nad2-W-cox1-L2-cox2-D-atp8-atp6-cox3-G- nad3-R-N-A-E-S1) Balanomorpha was conserved. Furthermore, phylogeny analysis indicated that the existing Balanomorpha species family was divided into nine rearrangement patterns, supporting the polyphyly of Balanoidea.
Collapse
|
3
|
Lee WK, Chan BKK, Ju SJ, Kim D, Kim SJ. The mitochondrial genome of hydrothermal vent barnacle Eochionelasmus coreana (Cirripedia: Thoracica) from the Indian Ocean. MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:710-712. [PMID: 33796644 PMCID: PMC7971211 DOI: 10.1080/23802359.2020.1851153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Balanomorph Eochionelasmus species are hydrothermal vent endemic barnacles. In the genus Eochionelasmus, three species are known to date and they distribute at three different vent fields in Pacific and Indian Oceans, E. ohtai in the Southwest Pacific Ocean, E. paquensis in the East Pacific Ocean, and E. coreana in the Indian Ocean. Therefore, Eochionelasmus species are considered to be a meaningful model taxon to elucidate the evolutionary history of vent organism in relation to geotectonic events. Here, we characterized the partial mitogenome of a newly described vent barnacle Eochionelasmus coreana Chan et al., 2020 from the Solitaire vent field in the Indian Ocean. The length of mitogenome was 16,804 bp with 64.0% AT content. Its gene content and organization was identical to those of E. ohtai. There was one significant part in the mitogenome of E. coreana, which was a long intergenic region over 2 kb found between tRNAPro and tRNAThr. The phylogenetic tree suggested the monophyly of E. ohtai and E. coreana with high supporting values. In the future, additional mitogenome analysis of the last Eochionelasmus species, E. paquensis, could expand our understanding about the speciation and global distribution of Eochionelasmus species.
Collapse
Affiliation(s)
- Won-Kyung Lee
- Genome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Korea
| | - Benny K K Chan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Se-Jong Ju
- Global Ocean Research Center, Korea Institute of Ocean Science and Technology, Busan, Korea.,Marine Biology Major, University of Science & Technology, Daejeon, Korea
| | - Dongsung Kim
- Marine Ecosystem Research Center, Korea Institute of Ocean Science and Technology, Busan, Korea
| | - Se-Joo Kim
- Genome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Korea
| |
Collapse
|
4
|
Kim RO, Chan BKK, Hou BK, Ju SJ, Kim SJ. Complete mitochondrial genome of the deep-water epibiotic stalked barnacle, Glyptelasma annandalei (Cirripedia, Lepadiformes, Poecilasmatidae). MITOCHONDRIAL DNA PART B-RESOURCES 2018. [DOI: 10.1080/23802359.2018.1536487] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Ryeo-Ok Kim
- Department of Life Science, College of Natural Sciences Sangmyung University, Seoul, Korea
| | | | - Bo Kyeng Hou
- Genome Editing Research Center, Korea Research Institute Bioscience and Biotechnology, Daejeon, Korea
| | - Se-Jong Ju
- Global Ocean Research Center, Korea Institute of Ocean Science and Technology, Busan, Korea
- Marine Biology Major, University of Science & Technology, Daejeon, Korea
| | - Se-Joo Kim
- Genome Editing Research Center, Korea Research Institute Bioscience and Biotechnology, Daejeon, Korea
| |
Collapse
|
5
|
Kim SJ, Kang HM, Corbari L, Chan BKK. First report on the complete mitochondrial genome of the deep-water scalpellid barnacle Arcoscalpellum epeeum (Cirripedia, Thoracica, Scalpellidae). Mitochondrial DNA B Resour 2018; 3:1288-1289. [PMID: 33490579 PMCID: PMC7800395 DOI: 10.1080/23802359.2018.1532844] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Accepted: 08/31/2018] [Indexed: 11/25/2022] Open
Abstract
Scalpellids are one of the largest families of Scalpelliformes and reproduce either androdioeciously or dioeciously. Here, we characterized the first mitogenome of a scalpellid barnacle (Arcoscalpellum epeeum), which was 15,593 bp in length with a 71.5% AT content. In comparison with the pollicipedids Capitulum mitella and Pollicipes polymerus, the tRNA genes of A. epeeum were rearranged between ND3 and ND5, between CYTB and ND1, and between 12S rRNA and ND2. On the mitogenomic tree, the Scalpelliformes families Pollicipedidae and Scalpellidae were not monophyletic, which concurs with previous studies.
Collapse
Affiliation(s)
- Se-Joo Kim
- Genome Editing Research Center, Korea Research Institute Bioscience and Biotechnology, Daejeon, Korea
| | - Hyun Mi Kang
- Stem Cell Research Center, Korea Research Institute Bioscience and Biotechnology, Daejeon, Korea
| | - Laure Corbari
- Institut de Systématique, Evolution, Biodiversité, Muséum national d'Histoire naturelle, UMR 7205 CNRS, Sorbonne Université, EPHE, Paris, France
| | | |
Collapse
|
6
|
Chan BKK, Aguilar L, Hou BK, Kang HM, Kim SJ. Complete mitochondrial genome of the catophragmid barnacle Catomerus polymerus (Cirripedia, Thoracica, Balanomorpha, Catophragmidae). Mitochondrial DNA B Resour 2018; 3:1286-1287. [PMID: 33474495 PMCID: PMC7799505 DOI: 10.1080/23802359.2018.1532843] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Accepted: 08/31/2018] [Indexed: 11/11/2022] Open
Abstract
The family Catophragmidae is one of the lower balanomorphs from traditional and recent multiple mitochondrial and nuclear markers molecular analysis. Here, we characterized the first mitogenome of the catophragmid barnacle Catomerus polymerus, which was 15,446 bp in length with a 68.3% AT content. The mitogenome had the typical pancrustacean gene arrangement, which was identical to the mitogenome configurations of the chthamalid Octomeris sp. and pachylasmatoid Eochionelasmus ohtai. On the mitogenomic tree, the catophragmid Catomerus polymerus formed an independent branch that was basal to the members of the superfamilies Tetraclitoidea and Balanoidea, which was inconsistent with previous findings.
Collapse
Affiliation(s)
| | - Lucia Aguilar
- Institute for Conservation Biology & Environmental Management, Biological Sciences, University of Wollongong, NSW, Australia
| | - Bo Kyeng Hou
- Genome Editing Research Center, Korea Research Institute Bioscience and Biotechnology, Daejeon, Korea
| | - Hyun Mi Kang
- Stem Cell Research Center, Korea Research Institute Bioscience and Biotechnology, Daejeon, Korea
| | - Se-Joo Kim
- Genome Editing Research Center, Korea Research Institute Bioscience and Biotechnology, Daejeon, Korea
| |
Collapse
|