1
|
Hu Y, Jia F, Hu L, Wu C, Tian T, Li T, Chen B. Comparative mitogenome research revealed the phylogenetics and evolution of the superfamily Tenebrionoidea (Coleoptera: Polyphage). Ecol Evol 2024; 14:e11520. [PMID: 38932962 PMCID: PMC11199344 DOI: 10.1002/ece3.11520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 05/13/2024] [Accepted: 05/20/2024] [Indexed: 06/28/2024] Open
Abstract
Despite the worldwide distribution and rich diversity of the superfamily Tenebrionoidea, the knowledge of the mitochondrial genomes (mtgenome) characteristics of the superfamily is still very limited, and its phylogenetics and evolution remain unresolved. In the present study, we newly sequenced mtgenomes from 19 species belonging to Tenebrionoidea, and a total of 90 mitochondrial genomes from 16 families of Tenebrionoidea were used for phylogenetic analysis. There exist 37 genes for all 82 species of complete mtgenomes of 16 families investigated, and their characteristics are identical as reported mtgenomes of other Tenebrionoids. The Ka/Ks analysis suggests that all 13 PCGs have undergone a strong purifying selection. The phylogenetic analysis suggests the monophyly of Mordellidae, Meloidae, Oedemeridae, Pyrochroidae, Salpingidae, Scraptiidae, Lagriidae, and Tenebrionidae, and the Mordellidae is close to the Ripiphoridae. The "Tenebrionidae clade" and "Meloidae clade" are monophyletic, and both of them are sister groups. In the "Meloidae clade," Meloidae is close to Anthicidae. In the "Tenebrionidae clade," the family Lagriidae and Tenebrionidae are sister groups. The divergence time analysis suggests that Tenebrionoidea originated in the late Jurassic, Meloidae Mordellidae, Lagriidae, and Tenebrionidae in the Cretaceous, Oedemeridae in Paleogene. The work lays a base for the study of mtgenome, phylogenetics, and evolution of the superfamily Tenebrionoidea.
Collapse
Affiliation(s)
- Yun‐Jian Hu
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, College of Life SciencesChongqing Normal UniversityChongqingChina
| | - Feng‐Fan Jia
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, College of Life SciencesChongqing Normal UniversityChongqingChina
| | - Li Hu
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, College of Life SciencesChongqing Normal UniversityChongqingChina
| | - Chuan Wu
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, College of Life SciencesChongqing Normal UniversityChongqingChina
| | - Tian Tian
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, College of Life SciencesChongqing Normal UniversityChongqingChina
| | - Ting‐Jing Li
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, College of Life SciencesChongqing Normal UniversityChongqingChina
| | - Bin Chen
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, College of Life SciencesChongqing Normal UniversityChongqingChina
| |
Collapse
|
2
|
Wei Z, Shi A. The complete mitochondrial genomes of four lagriine species (Coleoptera, Tenebrionidae) and phylogenetic relationships within Tenebrionidae. PeerJ 2023; 11:e15483. [PMID: 37283890 PMCID: PMC10241167 DOI: 10.7717/peerj.15483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 05/09/2023] [Indexed: 06/08/2023] Open
Abstract
It is common to use whole mitochondrial genomes to analyze phylogenetic relationships among insects. In this study, seven mitogenomes of Tenebrionidae are newly sequenced and annotated. Among them, four species (Cerogira janthinipennis (Fairmaire, 1886), Luprops yunnanus (Fairmaire, 1887), Anaedus unidentasus Wang & Ren, 2007, and Spinolyprops cribricollis Schawaller, 2012) represent the subfamily Lagriinae. In this subfamily, the mitogenomes of the tribes Goniaderini (A. unidentasus) and Lupropini (L. yunnanus and S. cribricollis) were first reported; they were found to be 15,328-16,437 bp in length and encode 37 typical mitochondrial genes (13 PCGs, 2 rRNAs, 22 tRNAs, and a single noncoding control region). Most protein-coding genes in these mitogenomes have typical ATN start codons and TAR or an incomplete stop codon T-. In these four lagriine species, F, L2, I, and N are the most frequently used amino acids. In the 13 PCGs, the gene atp8 (Pi = 0.978) was the most diverse nucleotide, while cox1 was the most conserved gene with the lowest value (Pi = 0.211). The phylogenetic results suggest that Pimelinae, Lagriinae, Blaptinae, Stenochiinae, and Alleculinae are monophyletic, Diaperinae is paraphyletic, and Tenebrioninae appears polyphyletic. In Lagriinae, the tribe Lupropini appears paraphyletic because Spinolyprops is clustered with Anaedus in Goniaderini. These mitogenomic data provide important molecular data for the phylogeny of Tenebrionidae.
Collapse
|
3
|
Bai Y, Ye L, Yang K, Gao X. Complete mitochondrial genome and phylogenetic analysis of Mastax latefasciata Liebke 1931 (Insecta: Coleoptera: Carabidae). MITOCHONDRIAL DNA PART B 2022; 7:2040-2043. [DOI: 10.1080/23802359.2022.2151829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Yu Bai
- College of Mathematics & Information Science, Guiyang University, Guiyang, China
| | - Lin Ye
- College of Biology and Environmental Engineering, Guiyang University, Guiyang City, China
| | - Kang Yang
- College of Biology and Environmental Engineering, Guiyang University, Guiyang City, China
| | - Xuyuan Gao
- Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Institute of Plant Protection, Guangxi Academy of Agricultural Sciences, Nanning, China
- Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China Ministry of Agriculture and Rural Affairs, Institute of Plant Protection, Guangxi Academy of Agricultural Sciences, Nanning, China
| |
Collapse
|
4
|
Bai Y, Yang K, Ye L, Gao X. Complete mitochondrial genome of Pseudoglomeris magnifica (Shelford, 1907) (Insecta: Dictyoptera: Blaberidae). Mitochondrial DNA B Resour 2022; 7:1672-1675. [PMID: 36147358 PMCID: PMC9487967 DOI: 10.1080/23802359.2022.2119823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
Pseudoglomeris magnifica (Shelford, 1907) is bred as a pet because of its beautiful appearance. Its complete mitochondrial genome (GenBank accession number MW630139), obtained from the Manwan Town population, was characterized as the first complete mitogenome of the genus Pseudoglomeris. The mitogenome consists of a circular DNA molecule of 16,627 bp with 76.23% AT content. It comprises 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one control region. The PCGs have the traditional ATN (Met) start codon, except cox1 and nad1 (which have TTG (Met) as the start codon), and are terminated by the traditional TAN stop codon.
Collapse
Affiliation(s)
- Yu Bai
- College of Mathematics & Information Science, Guiyang University, Guiyang, China
| | - Kang Yang
- College of Biology and Environmental Engineering, Guiyang University, Guiyang City, China
| | - Lin Ye
- College of Biology and Environmental Engineering, Guiyang University, Guiyang City, China
| | - Xuyuan Gao
- Institute of Plant Protection, Guangxi Academy of Agricultural Sciences, Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Nanning, China
- Ministry of Agriculture and Rural Affairs, Institute of Plant Protection, Guangxi Academy of Agricultural Sciences, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Nanning, China
| |
Collapse
|
5
|
Wu C, Zhou Y, Tian T, Li TJ, Chen B. First report of complete mitochondrial genome in the subfamily Alleculinae and mitochondrial genome-based phylogenetics in Tenebrionidae (Coleoptera: Tenebrionoidea). INSECT SCIENCE 2022; 29:1226-1238. [PMID: 34791791 DOI: 10.1111/1744-7917.12983] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2021] [Revised: 09/14/2021] [Accepted: 09/21/2021] [Indexed: 06/13/2023]
Abstract
Despite worldwide distribution and rich diversity, the knowledge of mitochondrial genome (mtgenome) characteristics within the family Tenebrionidae (Coleoptera) is still very limited, and phylogenetics remain unresolved for the family. In this study, the mtgenomes for 12 species are newly sequenced and annotated. Three of the species represent the first report of complete mtgenomes from the subfamily Alleculinae. Comparative analysis of 36 tenebrionid mtgenomes finds that gene composition and order are the same as a theoretical ancestral insect mtgenome, and AT bias, length variation, and codon usage are consistent with other reported beetle mtgenomes. Some intergenic overlap and gap sequences may contain phylogenetically informative information, whereas neither the conserved nor repeat sequences in the control region do. The subfamilies Lagriinae, Pimeliinae, Stenochiinae, and Alleculinae are found to be monophyletic, and the subfamilies Diaperinae and Tenebrioninae polyphyletic in our study. Furthermore, Lagriinae is sister to the rest of the subfamilies. At the tribal level, the tribes Lagriini in the subfamily Lagrrinae; Strongyliini in Stenochiinae; Cteniopodini in Alleculinae; and Triboliini, Opatrini, and Amarygmini in Tenebrioninae are monophyletic; while Diaperini in Diaperinae, and Tenebrionini in Tenebrioninae are polyphyletic.
Collapse
Affiliation(s)
- Chuan Wu
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, Chongqing Normal University, Chongqing, China
| | - Yong Zhou
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, Chongqing Normal University, Chongqing, China
| | - Tian Tian
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, Chongqing Normal University, Chongqing, China
| | - Ting-Jing Li
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, Chongqing Normal University, Chongqing, China
| | - Bin Chen
- Chongqing Key Laboratory of Vector Insects, Institute of Entomology and Molecular Biology, Chongqing Normal University, Chongqing, China
| |
Collapse
|
6
|
Bai Y, Yang K, Ye L, Gao X. Complete mitochondrial genome of Morphostenophanes yunnanus (Zhou, 2020) (Insecta: Coleoptera: Tenebrionidae) and phylogenetic analysis. Mitochondrial DNA B Resour 2022; 7:1352-1354. [PMID: 35903298 PMCID: PMC9318264 DOI: 10.1080/23802359.2022.2097030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
Morphostenophanes yunnanus (Zhou, 2020) is widely distributed from central to eastern Yunnan with distinct geographical variations in morphology. Beetles were collected in Manwan Town, and a mitochondrial genome sequence (GenBank accession number MZ298928) of this species was sequenced using the MGI-SEQ 2000 platform, assembled using NOVOPlasty v4.3.1, and characterized. The mitogenome was a circular DNA molecule of 15,690 bp with 64.710% AT content, which comprised 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and one control region. The protein-coding genes showed the typical ATN (Met) and TTG (Met) start codons, except nad1 and cox1 (TTG as start codon), and were terminated by typical TAN stop codons. The maximum-likelihood polygenetic tree was generated using protein sequences of thirteen protein-coding regions of seventeen mitogenomes with mtREV + G + F + I with 1000 replicates under the Bayesian information criterion using MEGA 11, which showed that M. yunnanus was the most closely related to M. sinicus. This study provides essential genetic and molecular data for phylogenetic analyses of the genus Morphostenophanes.
Collapse
Affiliation(s)
- Yu Bai
- College of Mathematics & Information Science, Guiyang University, Guiyang, China
| | - Kang Yang
- College of Biology and Environmental Engineering, Guiyang University, Guiyang, China
| | - Lin Ye
- College of Biology and Environmental Engineering, Guiyang University, Guiyang, China
| | - Xuyuan Gao
- Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Institute of Plant Protection, Guangxi Academy of Agricultural Sciences, Nanning, China
| |
Collapse
|
7
|
Pivato AF, Miranda GM, Prichula J, Lima JEA, Ligabue RA, Seixas A, Trentin DS. Hydrocarbon-based plastics: Progress and perspectives on consumption and biodegradation by insect larvae. CHEMOSPHERE 2022; 293:133600. [PMID: 35031254 DOI: 10.1016/j.chemosphere.2022.133600] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 12/27/2021] [Accepted: 01/10/2022] [Indexed: 06/14/2023]
Abstract
The obvious contrast between the remarkable durability and the high consumption of plastic products leads to the deposition of at least 100 million tons of plastics per year in nature. Since 2010, several studies have shown the potential of insect larvae to biodegrade different types of plastics, at higher rates than those reported for microorganisms. This review discusses a compilation of studies about the consumption and biodegradation of hydrocarbon-based plastics, particularly PE, PS, PP and PVC, by lepidopteran and coleopteran larvae. Insects of the Coleoptera order seem to have a better adaptation for PS biodegradation, while those of the Lepidoptera order can better biodegrade PE. Tenebrio molitor biomineralize PE and PS into CO2, and PVC into HCl; while Tenebrio obscurus and Zophobas atratus converts PE and PS into CO2, respectively. Plastic biodegradation by T. molitor has been shown to be dependent on microbiota, exception for PE. Similar PS and PE biodegradation profile has been shown for T. obscurus. PS, PP and PE biodegradation by Z. atratus is also reported to be microbial-dependent. For Galleria mellonella, microbial role on PE biodegradation is still controversial, but the PS metabolism was proved to be microbiota-independent. Advances in this field has stimulated new studies with other insect species, which need to be better explored. Uncovering and understanding the chemical processes behind the innate plastic biodegradation by insect larvae will open the perspective to new eco-friendly innovative biotechnological solutions for the challenge of plastic waste.
Collapse
Affiliation(s)
- Andressa F Pivato
- Universidade Federal de Ciências da Saúde de Porto Alegre (UFCSPA), Departamento de Ciências Básicas da Saúde, Laboratório de Microbiologia Molecular, Porto Alegre, Rio Grande do Sul, Brazil
| | - Gabriela M Miranda
- Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Escola Politécnica, Laboratório de Organometálicos e Resinas, Porto Alegre, Rio Grande do Sul, Brazil
| | - Janira Prichula
- Universidade Federal de Ciências da Saúde de Porto Alegre (UFCSPA), Departamento de Ciências Básicas da Saúde, Laboratório de Microbiologia Molecular, Porto Alegre, Rio Grande do Sul, Brazil
| | - Jeane E A Lima
- Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Escola Politécnica, Laboratório de Organometálicos e Resinas, Porto Alegre, Rio Grande do Sul, Brazil
| | - Rosane A Ligabue
- Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Escola Politécnica, Laboratório de Organometálicos e Resinas, Porto Alegre, Rio Grande do Sul, Brazil
| | - Adriana Seixas
- Universidade Federal de Ciências da Saúde de Porto Alegre (UFCSPA), Departamento de Farmacociências, Porto Alegre, Rio Grande do Sul, Brazil
| | - Danielle S Trentin
- Universidade Federal de Ciências da Saúde de Porto Alegre (UFCSPA), Departamento de Ciências Básicas da Saúde, Laboratório de Microbiologia Molecular, Porto Alegre, Rio Grande do Sul, Brazil.
| |
Collapse
|
8
|
Zhao Z, Wang J, Wu L, Bai Y, Wang C, Qi G, Li C, Cao Y. Characterization of the complete mitochondrial genome of Pseudorhaetus sinicus Boileau, 1899 (Coleoptera: Lucanidae). Mitochondrial DNA B Resour 2021; 6:3398-3399. [PMID: 34805516 PMCID: PMC8604539 DOI: 10.1080/23802359.2021.1997656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
Abstract
Pseudorhaetus sinicus is a stag beetle common to China and Vietnam, but whose distribution is limited within China. Little is known about the molecular biological characteristics of this species, so we characterized its complete mitochondrial genome (GenBank accession number MZ504793.1). The mitogenome consists of a circular DNA molecule of 18,126 bp, with 67.693% AT content. It contains 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes. The PCGs have typical ATN (Met) start codons and TAN stop codons. Phylogenetic analysis suggests that P. sinicus is closely related to Prosopocoilus confucius. This newly described mitochondrial genome provides a valuable resource for the phylogenetic analysis of Lucanidae beetles.
Collapse
Affiliation(s)
- Zhibing Zhao
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insect of the Mountainous Region, Guizhou Provincial Engineering Research Center for Biological Resources Protection and Efficient Utilization of the Mountainous Region, Guiyang University, Guiyang, China
| | - Jie Wang
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insect of the Mountainous Region, Guizhou Provincial Engineering Research Center for Biological Resources Protection and Efficient Utilization of the Mountainous Region, Guiyang University, Guiyang, China
| | - Long Wu
- College of The Environment & Ecology, Museum of Biology, Xiamen University, Xiamen, China
| | - Yu Bai
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insect of the Mountainous Region, Guizhou Provincial Engineering Research Center for Biological Resources Protection and Efficient Utilization of the Mountainous Region, Guiyang University, Guiyang, China
| | - Chun Wang
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insect of the Mountainous Region, Guizhou Provincial Engineering Research Center for Biological Resources Protection and Efficient Utilization of the Mountainous Region, Guiyang University, Guiyang, China
| | - Guiling Qi
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insect of the Mountainous Region, Guizhou Provincial Engineering Research Center for Biological Resources Protection and Efficient Utilization of the Mountainous Region, Guiyang University, Guiyang, China
| | - Can Li
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insect of the Mountainous Region, Guizhou Provincial Engineering Research Center for Biological Resources Protection and Efficient Utilization of the Mountainous Region, Guiyang University, Guiyang, China
| | - Yu Cao
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insect of the Mountainous Region, Guizhou Provincial Engineering Research Center for Biological Resources Protection and Efficient Utilization of the Mountainous Region, Guiyang University, Guiyang, China
| |
Collapse
|
9
|
Bai Y, Gao X, Yu Y, Long X, Zeng X, Wei D, Ye L. Complete mitochondrial genome of Morphostenophanes sinicus (Zhou, 2020) (Insecta: Coleoptera: Tenebrionidae). Mitochondrial DNA B Resour 2021; 6:2946-2948. [PMID: 34553052 PMCID: PMC8451664 DOI: 10.1080/23802359.2021.1970636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022] Open
Abstract
The genus Morphostenophanes is a small arboreal group of darkling beetles that are endemic to the Oriental region. The complete mitochondrial genome of the M. sinicus population from the Manwan Town was first characterized. The mitogenome consisted of a circular DNA molecule of 15,662 bp with a 66.352% AT content. It comprises 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes. The PCGs have a typical ATN (Met) start codon, except for nad1 (TTG as a start codon), and are terminated by typical TAN stop codons.
Collapse
Affiliation(s)
- Yu Bai
- College of Mathematics & Information Science, Guiyang University, Guiyang, China
| | - Xuyuan Gao
- Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Institute of Plant Protection, Guangxi Academy of Agricultural Sciences, Nanning, China
| | - Yonghao Yu
- Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Institute of Plant Protection, Guangxi Academy of Agricultural Sciences, Nanning, China
| | - Xiuzhen Long
- Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Institute of Plant Protection, Guangxi Academy of Agricultural Sciences, Nanning, China
| | - Xianru Zeng
- Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Institute of Plant Protection, Guangxi Academy of Agricultural Sciences, Nanning, China
| | - Dewei Wei
- Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Institute of Plant Protection, Guangxi Academy of Agricultural Sciences, Nanning, China
| | - Lin Ye
- College of Biology and Environmental Engineering, Guiyang University, Guiyang City, China
| |
Collapse
|
10
|
Bai Y, Chen J, Li G, Luo J, Wang H, Yang Y, Liang S, Ouyang B. Complete mitochondrial genome of Promethis valgipes valgipes (Marseul) (Insecta: Coleoptera: Tenebrionidae). MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:538-539. [PMID: 33628919 PMCID: PMC7889183 DOI: 10.1080/23802359.2020.1861564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Promethis valgipes valgipes (Marseul) is one of the important fungus-eating beetle distributed in central China, Korea, and Japan. Beetles were obtained from Pizhou City and the species’ mitochondrial genome was characterized (GenBank accession number MW201671). The mitogenome consists of a circular DNA molecule of 15,801 bp, with 68.51% AT content. It comprises 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes. The PCGs have typical ATN (Met) start codons, except nad1 (TTG as start codon), and are terminated by typical TAN stop codons.
Collapse
Affiliation(s)
- Yu Bai
- College of Mathematics & Information Science, Guiyang University, Guiyang, China
| | - Jun Chen
- School of Electronic & Communication Engineering, Guiyang University, Guiyang, China
| | - Guoyong Li
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, China
| | - Jianlin Luo
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, China
| | - Hui Wang
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, China
| | - Yang Yang
- College of Mathematics & Information Science, Guiyang University, Guiyang, China
| | - Sheng Liang
- College of Mathematics & Information Science, Guiyang University, Guiyang, China
| | - Bocheng Ouyang
- College of Mathematics & Information Science, Guiyang University, Guiyang, China
| |
Collapse
|
11
|
Zhou X. Characterization of the complete mitochondrial genome of the maize weevil, Sitophilus zeamais (Insecta: Coleoptera: Curculionidae) from Guizhou province. Mitochondrial DNA B Resour 2020; 5:1244-1245. [PMID: 33366926 PMCID: PMC7510821 DOI: 10.1080/23802359.2020.1731354] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 02/11/2020] [Indexed: 11/21/2022] Open
Abstract
The complete mitochondrial genome of the maize weevil Sitophilus zeamais (GenBank accession number: MN905575) from Guizhou Province consists of a circular DNA molecule of 18,421 bp (with 75.69% A + T content), which is longer by 316 bp than that of the mitogenome of S. zeamais from Nigeria. The mitogenome comprises 13 protein-coding, 22 tRNA, and two rDNA genes. The protein-coding genes have typical ATN (Met) initiation codons and are terminated by typical TAN stop codons.
Collapse
Affiliation(s)
- Xin Zhou
- College of Mathematics and Information Science, Guiyang University, Guiyang, China
| |
Collapse
|
12
|
Hong KJ, Ki W, Park DS, Yang BK, Lee H, Park J, Lee W. The complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae). Mitochondrial DNA B Resour 2020; 5:2291-2293. [PMID: 33367012 PMCID: PMC7510575 DOI: 10.1080/23802359.2020.1772684] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2020] [Accepted: 05/16/2020] [Indexed: 11/02/2022] Open
Abstract
Alphitobius diaperinus Panzer, 1797 is a major pest in poultry production and easily observed in poultry litter. We have determined mitochondrial genome of A. diaperinus collected in Chungcheongbuk-do, Republic of Korea. The circular mitogenome of A. diaperinus is 15,511 bp long which is longer than that of Z. atratus but shorter than that of T. obscurus. It includes 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNAs. The base composition was AT-biased (72.4%). Phylogenetic tree displays that tribe Alphitobiini is clustered with tribes Helopini and Diaperini with enough supportive values of three phylogenetic trees.
Collapse
Affiliation(s)
- Ki-Jeong Hong
- Department of Plant Medicine, Sunchon National University, Suncheon, Korea
| | - Woong Ki
- Department of Plant Medicine, Sunchon National University, Suncheon, Korea
| | | | | | - Hyobin Lee
- Department of Plant Medicine, Gyeongsang National University, Jinju, The Republic of Korea
| | - Jongsun Park
- Infoboss Co., Ltd, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Wonhoon Lee
- Department of Plant Medicine, Gyeongsang National University, Jinju, The Republic of Korea
- Institute of Agriculture and Life Science, Gyeongsang National University, Jinju, The Republic of Korea
| |
Collapse
|
13
|
Fang B. Characterization of the complete mitochondrial genome of Diplocheila zealandica Redtenbacher (Insecta: Coleoptera: Carabidae) from Henan province. Mitochondrial DNA B Resour 2020; 5:1234-1235. [PMID: 33366923 PMCID: PMC7510827 DOI: 10.1080/23802359.2020.1731348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 02/11/2020] [Indexed: 12/03/2022] Open
Abstract
Diplocheila zealandica Redtenbacher is a natural enemy of aphids and larva of lepidoptera worldwide. Here, we first report the characterization of mitochondrial genome of D. zealandica in Diplocheila and its phylogenetic position. The complete mitogenome (GenBank accession number: MN995217) of D. zealandica from Henan Province consisted of a circular DNA molecule of 16,190 bp (with 21.66% G + C content), which comprised 13 protein-coding genes (PCGs), and 22 tRNA, and two rRNA genes. PCGs had typical ATN (Met) initiation codons and were terminated by typical TAN stop codons.
Collapse
Affiliation(s)
- Bing Fang
- College of Mathematics and Information Science, Guiyang University, Guiyang, China
| |
Collapse
|
14
|
Wang H, Bai Y, Li G, Luo J, Li C. Characterization of the complete mitochondrial genome of Aulacophora indica (Insecta: Coleoptera: Chrysomeloidea) from Zhijiang. Mitochondrial DNA B Resour 2020. [DOI: 10.1080/23802359.2020.1741466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Affiliation(s)
- Hui Wang
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, China
| | - Yu Bai
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, China
| | - Guoyong Li
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, China
| | - Jianlin Luo
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, China
| | - Can Li
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, China
| |
Collapse
|
15
|
Bai Y, Chen J, Li G, Wang H, Luo J, Li C. Complete mitochondrial genome of the common silverfish Lepisma saccharina (Insecta: Zygentoma: Lepismatidae). Mitochondrial DNA B Resour 2020. [DOI: 10.1080/23802359.2020.1742598] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Affiliation(s)
- Yu Bai
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, Guizhou, China
| | - Jun Chen
- School of Electronic & Communication engineering, Guiyang University, Guiyang, Guizhou, China
| | - Guoyong Li
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, Guizhou, China
| | - Hui Wang
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, Guizhou, China
| | - Jianlin Luo
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, Guizhou, China
| | - Can Li
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, Guizhou, China
| |
Collapse
|
16
|
Liang S, Bai Y, Chen J, Ouyang B. Characterization of the complete mitochondrial genome of Oryzaephilus surinamensis Linne (Insecta: Coleoptera: Silvanidae) from Xichuan. Mitochondrial DNA B Resour 2019; 4:4118-4119. [PMID: 33366345 PMCID: PMC7707697 DOI: 10.1080/23802359.2019.1692714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2019] [Accepted: 11/09/2019] [Indexed: 10/29/2022] Open
Abstract
The saw-toothed grain beetle, Oryzaephilus surinamensis Linné, is a well-known stored-product insect. Beetles were obtained from Xichuan County and the mitochondrial genome was characterized (GenBank accession number MN535903). The mitogenome consists of a circular DNA molecule of 15,941 bp, with only 27.36% GC content. It comprises 13 protein-coding, 22 tRNA, and 2 rDNA genes. The protein-coding genes have typical ATN (Met) initiation codons and are terminated by typical TAN stop codons.
Collapse
Affiliation(s)
- Sheng Liang
- College of Mathematics & Information Science, Guiyang University, Guiyang, Guizhou, China
| | - Yu Bai
- Guizhou Provincial Key Laboratory for Rare Animal & Economic Insects of the Mountainous Region, Guiyang University, Guiyang, Guizhou, China
| | - Jun Chen
- School of Electronic & Communication Engineering, Guiyang University, Guiyang, Guizhou, China
| | - Bocheng Ouyang
- College of Mathematics & Information Science, Guiyang University, Guiyang, Guizhou, China
| |
Collapse
|
17
|
Ouyang B, Bai Y, Chen J, Wang J, Liang S. Characterization of the complete mitochondrial genome of lesser grain borer Rhyzopertha dominica Fabricius (Insecta: Coleoptera: Bostrichidae) from Jingziguan. Mitochondrial DNA B Resour 2019; 4:3952-3953. [PMID: 33366266 PMCID: PMC7707704 DOI: 10.1080/23802359.2019.1688120] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 10/27/2019] [Indexed: 12/03/2022] Open
Abstract
The lesser grain borer, Rhyzopertha dominica (Fabricius) is a primary pest of starch-containing stored products worldwide. Here, we report characterization of mitogenome of R. dominica and its phylogenetic position. Rhyzopertha dominica complete mitochondrial genome (GenBank accession number MN527959) from Jingziguan town consisted of a circular DNA molecule of 15,862 bp (with 74.36% A + T content). The mitogenome comprised of 13 protein-coding genes (PCGs), and 22 tRNA and two rRNA genes. PCGs had typical ATN (Met) initiation codons and were terminated by typical TAN stop codons.
Collapse
Affiliation(s)
- Bocheng Ouyang
- College of Mathematics and Information Science, Guiyang University, Guiyang, China
| | - Yu Bai
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insects of the Mountainous Region, Guiyang University, Guiyang, China
| | - Jun Chen
- School of Electronic and Communication Engineering, Guiyang University, Guiyang, China
| | - Junyang Wang
- College of Technology and Engineering, Beijing Normal University, Zhuhai, Zhuhai, China
| | - Sheng Liang
- College of Mathematics and Information Science, Guiyang University, Guiyang, China
| |
Collapse
|
18
|
Zhao M, He Z, Wang CY, Sun L, Feng Y. Mitochondrial genome of a medicinal beetle Blaps rhynchopetera (Coleoptera, Tenebrionidae) and phylogenetic analysis. Mitochondrial DNA B Resour 2019; 4:2583-2584. [PMID: 33365636 PMCID: PMC7706548 DOI: 10.1080/23802359.2019.1640650] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2019] [Accepted: 06/22/2019] [Indexed: 10/26/2022] Open
Abstract
Blaps rhynchopetera is a species of folk medicinal beetle that has been used for a long time in Southwest China. The complete mitogenome of the beetle (GenBank accession number MK854717) is 16,149 bp in size, including 13 protein-coding, 22 transfer RNAs, two ribosomal RNAs genes, and a noncoding D-loop region. The D-loop of 1255 bp length is located between rRNA-S and tRNAIle. The overall base composition of B. rhynchopetera is 41.58% for A, 10.31% for G, 31.77% for T, and 16.34% for C, with a high AT bias of 73.35%. The present data could contribute to detailed phylogeographic analysis of this valuable medicinal insect.
Collapse
Affiliation(s)
- Min Zhao
- Key Laboratory of Cultivating and Utilization of Resource Insects of State Forestry Administration, Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, P.R. China
| | - Zhao He
- Key Laboratory of Cultivating and Utilization of Resource Insects of State Forestry Administration, Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, P.R. China
| | - Cheng-Ye Wang
- Key Laboratory of Cultivating and Utilization of Resource Insects of State Forestry Administration, Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, P.R. China
| | - Long Sun
- Key Laboratory of Cultivating and Utilization of Resource Insects of State Forestry Administration, Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, P.R. China
| | - Ying Feng
- Key Laboratory of Cultivating and Utilization of Resource Insects of State Forestry Administration, Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, P.R. China
| |
Collapse
|
19
|
Zhang YH, Zhao YY. The complete mitochondrial genome of dark mealworm Tenebrio obscurus (Coleoptera: Tenebrionidae). Mitochondrial DNA B Resour 2019; 4:2560-2561. [PMID: 33365626 PMCID: PMC7706536 DOI: 10.1080/23802359.2019.1642155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Accepted: 06/22/2019] [Indexed: 11/03/2022] Open
Abstract
Mealworms are the most common edible insect and feed additives in poultry, livestock, and aquaculture production. In the present study, the complete mitochondrial genome of dark mealworm Tenebrio obscurus (Zunyi population) was sequenced and annotated. The 15,509 bp circular mitogenome contains a conserved set of 37 mitochondrial genes including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and an A + T-rich region. The gene order is identical to the typical insect gene arrangement. Great differences were found in A + T-rich regions between Zunyi population and Guiyang population including large deletion and substitution. Phylogenetic analysis showed that T. obscurus clustered within Tenebrionoidea and was closely related to Tenebrio molitor.
Collapse
Affiliation(s)
- Yan-Hua Zhang
- School of Life Sciences, Jiangsu Normal University, Xuzhou, China
| | - Yan-Yu Zhao
- Department of medical genetics, Zunyi Medical University, Zunyi, China
| |
Collapse
|
20
|
Bai Y, Wang H, Li G, Luo J, Liang S, Li C. Complete mitochondrial genome of the super mealworm Zophobas atratus (Fab.) (Insecta: Coleoptera: Tenebrionidae). MITOCHONDRIAL DNA PART B-RESOURCES 2019. [DOI: 10.1080/23802359.2019.1591237] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Yu Bai
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insects of the Mountainous Region, College of Biology and Environmental Engineering, Guiyang University, Guiyang, China
| | - Hui Wang
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insects of the Mountainous Region, College of Biology and Environmental Engineering, Guiyang University, Guiyang, China
| | - Guoyong Li
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insects of the Mountainous Region, College of Biology and Environmental Engineering, Guiyang University, Guiyang, China
| | - Jianlin Luo
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insects of the Mountainous Region, College of Biology and Environmental Engineering, Guiyang University, Guiyang, China
| | - Sheng Liang
- College of Mathematics and Information Science, Guiyang University, Guiyang, China
| | - Can Li
- Guizhou Provincial Key Laboratory for Rare Animal and Economic Insects of the Mountainous Region, College of Biology and Environmental Engineering, Guiyang University, Guiyang, China
| |
Collapse
|