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For: Custódio N, Vivo M, Antoniou M, Carmo-Fonseca M. Splicing- and cleavage-independent requirement of RNA polymerase II CTD for mRNA release from the transcription site. ACTA ACUST UNITED AC 2007;179:199-207. [PMID: 17938247 PMCID: PMC2064756 DOI: 10.1083/jcb.200612109] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Number Cited by Other Article(s)
1
Aydin E, Schreiner S, Böhme J, Keil B, Weber J, Žunar B, Glatter T, Kilchert C. DEAD-box ATPase Dbp2 is the key enzyme in an mRNP assembly checkpoint at the 3'-end of genes and involved in the recycling of cleavage factors. Nat Commun 2024;15:6829. [PMID: 39122693 PMCID: PMC11315920 DOI: 10.1038/s41467-024-51035-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 07/24/2024] [Indexed: 08/12/2024]  Open
2
Herzel L, Ottoz DSM, Alpert T, Neugebauer KM. Splicing and transcription touch base: co-transcriptional spliceosome assembly and function. Nat Rev Mol Cell Biol 2017;18:637-650. [PMID: 28792005 DOI: 10.1038/nrm.2017.63] [Citation(s) in RCA: 239] [Impact Index Per Article: 29.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
3
A saga of cancer epigenetics: linking epigenetics to alternative splicing. Biochem J 2017;474:885-896. [PMID: 28270561 DOI: 10.1042/bcj20161047] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2016] [Revised: 12/29/2016] [Accepted: 01/05/2017] [Indexed: 12/14/2022]
4
Heyn P, Kalinka AT, Tomancak P, Neugebauer KM. Introns and gene expression: cellular constraints, transcriptional regulation, and evolutionary consequences. Bioessays 2014;37:148-54. [PMID: 25400101 PMCID: PMC4654234 DOI: 10.1002/bies.201400138] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
5
Rogulja-Ortmann A, Picao-Osorio J, Villava C, Patraquim P, Lafuente E, Aspden J, Thomsen S, Technau GM, Alonso CR. The RNA-binding protein ELAV regulates Hox RNA processing, expression and function within the Drosophila nervous system. Development 2014;141:2046-56. [PMID: 24803653 PMCID: PMC4132933 DOI: 10.1242/dev.101519] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
6
Eick D, Geyer M. The RNA Polymerase II Carboxy-Terminal Domain (CTD) Code. Chem Rev 2013;113:8456-90. [DOI: 10.1021/cr400071f] [Citation(s) in RCA: 303] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
7
Threonine-4 of mammalian RNA polymerase II CTD is targeted by Polo-like kinase 3 and required for transcriptional elongation. EMBO J 2012;31:2784-97. [PMID: 22549466 DOI: 10.1038/emboj.2012.123] [Citation(s) in RCA: 118] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2012] [Accepted: 04/12/2012] [Indexed: 12/31/2022]  Open
8
Schmid M, Jensen TH. Nuclear quality control of RNA polymerase II transcripts. WILEY INTERDISCIPLINARY REVIEWS-RNA 2012;1:474-85. [PMID: 21956943 DOI: 10.1002/wrna.24] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
9
Functional cooperation between the proteins Nck and ADAP is fundamental for actin reorganization. Mol Cell Biol 2011;31:2653-66. [PMID: 21536650 DOI: 10.1128/mcb.01358-10] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
10
Helenius K, Yang Y, Tselykh TV, Pessa HKJ, Frilander MJ, Mäkelä TP. Requirement of TFIIH kinase subunit Mat1 for RNA Pol II C-terminal domain Ser5 phosphorylation, transcription and mRNA turnover. Nucleic Acids Res 2011;39:5025-35. [PMID: 21385826 PMCID: PMC3130277 DOI: 10.1093/nar/gkr107] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
11
Splice-site mutations cause Rrp6-mediated nuclear retention of the unspliced RNAs and transcriptional down-regulation of the splicing-defective genes. PLoS One 2010;5:e11540. [PMID: 20634951 PMCID: PMC2902512 DOI: 10.1371/journal.pone.0011540] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2010] [Accepted: 06/16/2010] [Indexed: 12/18/2022]  Open
12
Liu P, Kenney JM, Stiller JW, Greenleaf AL. Genetic organization, length conservation, and evolution of RNA polymerase II carboxyl-terminal domain. Mol Biol Evol 2010;27:2628-41. [PMID: 20558594 DOI: 10.1093/molbev/msq151] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
13
Laurent L, Wong E, Li G, Huynh T, Tsirigos A, Ong CT, Low HM, Kin Sung KW, Rigoutsos I, Loring J, Wei CL. Dynamic changes in the human methylome during differentiation. Genome Res 2010;20:320-31. [PMID: 20133333 DOI: 10.1101/gr.101907.109] [Citation(s) in RCA: 768] [Impact Index Per Article: 51.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
14
Kazerouninia A, Ngo B, Martinson HG. Poly(A) signal-dependent degradation of unprocessed nascent transcripts accompanies poly(A) signal-dependent transcriptional pausing in vitro. RNA (NEW YORK, N.Y.) 2010;16:197-210. [PMID: 19926725 PMCID: PMC2802029 DOI: 10.1261/rna.1622010] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2009] [Accepted: 09/22/2009] [Indexed: 05/28/2023]
15
Pawlicki JM, Steitz JA. Nuclear networking fashions pre-messenger RNA and primary microRNA transcripts for function. Trends Cell Biol 2009;20:52-61. [PMID: 20004579 DOI: 10.1016/j.tcb.2009.10.004] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2009] [Revised: 10/15/2009] [Accepted: 10/20/2009] [Indexed: 10/20/2022]
16
Perales R, Bentley D. "Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions. Mol Cell 2009;36:178-91. [PMID: 19854129 DOI: 10.1016/j.molcel.2009.09.018] [Citation(s) in RCA: 286] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2009] [Revised: 07/07/2009] [Accepted: 08/06/2009] [Indexed: 12/27/2022]
17
Fabian Z, O’Brien P, Pajęcka K, Fearnhead HO. TPCK-induced apoptosis and labelling of the largest subunit of RNA polymerase II in Jurkat cells. Apoptosis 2009;14:1154-64. [DOI: 10.1007/s10495-009-0386-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
18
Rigo F, Martinson HG. Polyadenylation releases mRNA from RNA polymerase II in a process that is licensed by splicing. RNA (NEW YORK, N.Y.) 2009;15:823-36. [PMID: 19304926 PMCID: PMC2673064 DOI: 10.1261/rna.1409209] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
19
Yoh SM, Lucas JS, Jones KA. The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation. Genes Dev 2009;22:3422-34. [PMID: 19141475 DOI: 10.1101/gad.1720008] [Citation(s) in RCA: 185] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
20
Wang IF, Wu LS, Shen CKJ. TDP-43: an emerging new player in neurodegenerative diseases. Trends Mol Med 2008;14:479-85. [PMID: 18929508 DOI: 10.1016/j.molmed.2008.09.001] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2008] [Revised: 09/01/2008] [Accepted: 09/01/2008] [Indexed: 12/12/2022]
21
Quality control of mRNP in the nucleus. Chromosoma 2008;117:419-29. [PMID: 18563427 DOI: 10.1007/s00412-008-0166-4] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2008] [Revised: 05/03/2008] [Accepted: 05/05/2008] [Indexed: 12/30/2022]
22
Chapman RD, Heidemann M, Hintermair C, Eick D. Molecular evolution of the RNA polymerase II CTD. Trends Genet 2008;24:289-96. [PMID: 18472177 DOI: 10.1016/j.tig.2008.03.010] [Citation(s) in RCA: 116] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2008] [Revised: 03/19/2008] [Accepted: 03/20/2008] [Indexed: 11/19/2022]
23
Egloff S, Murphy S. Cracking the RNA polymerase II CTD code. Trends Genet 2008;24:280-8. [PMID: 18457900 DOI: 10.1016/j.tig.2008.03.008] [Citation(s) in RCA: 289] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2008] [Revised: 03/20/2008] [Accepted: 03/20/2008] [Indexed: 01/24/2023]
24
de Almeida SF, Carmo-Fonseca M. The CTD role in cotranscriptional RNA processing and surveillance. FEBS Lett 2008;582:1971-6. [PMID: 18435923 DOI: 10.1016/j.febslet.2008.04.019] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2008] [Revised: 04/13/2008] [Accepted: 04/14/2008] [Indexed: 11/24/2022]
25
Leslie M. New mRNA modification? J Biophys Biochem Cytol 2007. [PMCID: PMC2064772 DOI: 10.1083/jcb.1792iti5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
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