Robust removal of short-duration artifacts in long neonatal EEG recordings using wavelet-enhanced ICA and adaptive combining of tentative reconstructions

Automated detection and removal of flat line segments and large amplitude fluctuations in neonatal electroencephalography

Background

Artefact removal in neonatal electroencephalography (EEG) by visual inspection generally depends on the expertise of the operator, is time consuming and is not a consistent pre-processing step to the pipeline for the automated EEG analysis. Therefore, there is the need for the automated detection and removal of artefacts in neonatal EEG, especially of distinct and predominant artefacts such as flat line segments (mainly caused by instrumental error where contact between electrodes and head box is lost) and large amplitude fluctuations (related to neonatal movements).

Method

A threshold-based algorithm for the automated detection and removal of flat line segments and large amplitude fluctuations in neonatal EEG of infants at term-equivalent age is developed. The algorithm applies thresholds to the absolute second difference, absolute amplitude, absolute first difference and the ratio between the frequency content above 50 Hz and the frequency content across all frequencies.

Results

The algorithm reaches a median accuracy of 0.91, a median hit rate of 0.91 and a median false discovery rate of 0.37. Also, a significant improvement (≈10%) in the performance of a four-stage sleep classifier is observed after artefact removal with the proposed algorithm as compared to before its application.

Significance

An automated artefact removal method contributes to the pipeline of automated EEG analysis. The proposed algorithm has shown to have good performance and to be effective in neonatal EEG applications.

Dementia ConnEEGtome: Towards multicentric harmonization of EEG connectivity in neurodegeneration

The proposal to use brain connectivity as a biomarker for dementia phenotyping can be potentiated by conducting large-scale multicentric studies using high-density electroencephalography (hd- EEG). Nevertheless, several barriers preclude the development of a systematic "ConnEEGtome" in dementia research. Here we review critical sources of variability in EEG connectivity studies, and provide general guidelines for multicentric protocol harmonization. We describe how results can be impacted by the choice for data acquisition, and signal processing workflows. The implementation of a particular processing pipeline is conditional upon assumptions made by researchers about the nature of EEG. Due to these assumptions, EEG connectivity metrics are typically applicable to restricted scenarios, e.g., to a particular neurocognitive disorder. "Ground truths" for the choice of processing workflow and connectivity analysis are impractical. Consequently, efforts should be directed to harmonizing experimental procedures, data acquisition, and the first steps of the preprocessing pipeline. Conducting multiple analyses of the same data and a proper integration of the results need to be considered in additional processing steps. Furthermore, instead of using a single connectivity measure, using a composite metric combining different connectivity measures brings a powerful strategy to scale up the replicability of multicentric EEG connectivity studies. These composite metrics can boost the predictive strength of diagnostic tools for dementia. Moreover, the implementation of multi-feature machine learning classification systems that include EEG-based connectivity analyses may help to exploit the potential of multicentric studies combining clinical-cognitive, molecular, genetics, and neuroimaging data towards a multi-dimensional characterization of the dementia.

Progress and Challenges in Physiological Artifacts' Detection in Electroencephalographic Readings

BACKGROUND

Electroencephalographic (EEG) recordings are used to trace neural activity within the cortex to study brain functioning over time.

INTRODUCTION

During data acquisition, the unequivocal way to reduce artifact is to avoid artifact stimulating events. Though there are certain artifacts that make this task challenging due to their association with the internal human mechanism, in the human-computer interface, these physiological artifacts are of great assistance and act as a command signal for controlling a device or an application (communication). That is why pre-processing of electroencephalographic readings has been a progressive area of exploration, as none of the published work can be viewed as a benchmark for constructive artifact handling.

METHOD

This review offers a comprehensive insight into state of the art physiological artifact removal techniques listed so far. The study commences from the single-stage traditional techniques to the multistage techniques, examining the pros and cons of each discussed technique. Also, this review paper gives a general idea of various datasets available and briefs the topical trend in EEG signal processing.

RESULT

Comparing the state of the art techniques with hybrid ones on the basis of performance and computational complexity, it has been observed that the single-channel techniques save computational time but lack in effective artifact removal especially physiological artifacts. On the other hand, hybrid techniques merge the essential characteristics resulting in increased performance, but time consumption and complexity remain an issue.

CONCLUSION

Considering the high probability of the presence of multiple artifacts in EEG channels, a trade-off between performance, time and computational complexity is the only key for effective processing of artifacts in the time ahead. This paper is anticipated to facilitate upcoming researchers in enriching the contemporary artifact handling techniques to mitigate the expert's burden.

EEG artifact rejection by extracting spatial and spatio-spectral common components

BACKGROUND

Removing artifacts is a prerequisite step for the analysis of electroencephalographic (EEG) signals. Artifacts appear in both time and time-frequency as well as spatial (multi-channel) domains.

NEW METHODS

Here, we introduce two novel methods for removing EEG artifacts. In the first method, the common components among EEG channels are extracted and eliminated as artifacts, called common component rejection (CCR). In the second method, wavelet decomposition is employed to decompose the EEG signals, then the CCR method is applied to remove artifacts in the time- frequency domain, referred to as automatic wavelet CCR (AWCCR). The proposed methods are evaluated using semi-simulated data as well as application in real EEG data for motor imaginary classification.

RESULTS

For semi-simulated data, the AWCCR showed higher performance in removing artifacts than CCR. Also, applying each of the proposed methods to the real EEG data to remove artifacts before motor imaginary classification increased the classification accuracy by about 10% compared to not removing artifacts.

COMPARISON WITH EXISTING METHODS

The proposed methods are compared with independent component analysis (ICA) and automatic wavelet ICA. AWCCR outperformed all methods in removing artifacts from semi- simulated data. The results also showed that both AWCCR and CCR methods outperformed the existing methods in removing artifacts from the real EEG data to improve the accuracy of motor imaginary classification.

CONCLUSIONS

The findings show that in ordinary or motor imaginary EEG when signatures of artifacts are shared among EEG channels, AWCCR and CCR can identify and remove the artifacts.

EEG-IP: an international infant EEG data integration platform for the study of risk and resilience in autism and related conditions

BACKGROUND

Establishing reliable predictive and diganostic biomarkers of autism would enhance early identification and facilitate targeted intervention during periods of greatest plasticity in early brain development. High impact research on biomarkers is currently limited by relatively small sample sizes and the complexity of the autism phenotype.

METHODS

EEG-IP is an International Infant EEG Data Integration Platform developed to advance biomarker discovery by enhancing the large scale integration of multi-site data. Currently, this is the largest multi-site standardized dataset of infant EEG data.

RESULTS

First, multi-site data from longitudinal cohort studies of infants at risk for autism was pooled in a common repository with 1382 EEG longitudinal recordings, linked behavioral data, from 432 infants between 3- to 36-months of age. Second, to address challenges of limited comparability across independent recordings, EEG-IP applied the Brain Imaging Data Structure (BIDS)-EEG standard, resulting in a harmonized, extendable, and integrated data state. Finally, the pooled and harmonized raw data was preprocessed using a common signal processing pipeline that maximizes signal isolation and minimizes data reduction. With EEG-IP, we produced a fully standardized data set, of the pooled, harmonized, and pre-processed EEG data from multiple sites.

CONCLUSIONS

Implementing these integrated solutions for the first time with infant data has demonstrated success and challenges in generating a standardized multi-site data state. The challenges relate to annotation of signal sources, time, and ICA analysis during pre-processing. A number of future opportunities also emerge, including validation of analytic pipelines that can replicate existing findings and/or test novel hypotheses.

The Harvard Automated Processing Pipeline for Electroencephalography (HAPPE): Standardized Processing Software for Developmental and High-Artifact Data

Electroenchephalography (EEG) recordings collected with developmental populations present particular challenges from a data processing perspective. These EEGs have a high degree of artifact contamination and often short recording lengths. As both sample sizes and EEG channel densities increase, traditional processing approaches like manual data rejection are becoming unsustainable. Moreover, such subjective approaches preclude standardized metrics of data quality, despite the heightened importance of such measures for EEGs with high rates of initial artifact contamination. There is presently a paucity of automated resources for processing these EEG data and no consistent reporting of data quality measures. To address these challenges, we propose the Harvard Automated Processing Pipeline for EEG (HAPPE) as a standardized, automated pipeline compatible with EEG recordings of variable lengths and artifact contamination levels, including high-artifact and short EEG recordings from young children or those with neurodevelopmental disorders. HAPPE processes event-related and resting-state EEG data from raw files through a series of filtering, artifact rejection, and re-referencing steps to processed EEG suitable for time-frequency-domain analyses. HAPPE also includes a post-processing report of data quality metrics to facilitate the evaluation and reporting of data quality in a standardized manner. Here, we describe each processing step in HAPPE, perform an example analysis with EEG files we have made freely available, and show that HAPPE outperforms seven alternative, widely-used processing approaches. HAPPE removes more artifact than all alternative approaches while simultaneously preserving greater or equivalent amounts of EEG signal in almost all instances. We also provide distributions of HAPPE's data quality metrics in an 867 file dataset as a reference distribution and in support of HAPPE's performance across EEG data with variable artifact contamination and recording lengths. HAPPE software is freely available under the terms of the GNU General Public License at https://github.com/lcnhappe/happe.

Removal of Eye Blink Artifacts From EEG Signals Using Sparsity

Neural activities recorded using electroencephalography (EEG) are mostly contaminated with eye blink (EB) artifact. This results in undesired activation of brain-computer interface (BCI) systems. Hence, removal of EB artifact is an important issue in EEG signal analysis. Of late, several artifact removal methods have been reported in the literature and they are based on independent component analysis (ICA), thresholding, wavelet transformation, etc. These methods are computationally expensive and result in information loss which makes them unsuitable for online BCI system development. To address the above problems, we have investigated sparsity-based EB artifact removal methods. Two sparsity-based techniques namely morphological component analysis (MCA) and K-SVD-based artifact removal method have been evaluated in our work. MCA-based algorithm exploits the morphological characteristics of EEG and EB using predefined Dirac and discrete cosine transform (DCT) dictionaries. Next, in K-SVD-based algorithm an overcomplete dictionary is learned from the EEG data itself and is designed to model EB characteristics. To substantiate the efficacy of the two algorithms, we have carried out our experiments with both synthetic and real EEG data. We observe that the K-SVD algorithm, which uses a learned dictionary, delivers superior performance for suppressing EB artifacts when compared to MCA technique. Finally, the results of both the techniques are compared with the recent state-of-the-art FORCe method. We demonstrate that the proposed sparsity-based algorithms perform equal to the state-of-the-art technique. It is shown that without using any computationally expensive algorithms, only with the use of over-complete dictionaries the proposed sparsity-based algorithms eliminate EB artifacts accurately from the EEG signals.

Cortico-muscular coherence enhancement via coherent Wavelet enhanced Independent Component Analysis

Functional coupling between the motor cortex and muscle activity is usually detected and characterized using the spectral method of cortico-muscular coherence (CMC) between surface electromyogram (sEMG) and electroencephalogram (EEG) recorded synchronously under motor control task. However, CMC is often weak and not easily detectable in all individuals. One of the reasons for the low levels of CMC is the presence of noise and components unrelated to the considered tasks in recorded sEMG and EEG signals. In this paper we propose a method for enhancing relative levels of sEMG components coherent with synchronous EEG signals via a variant of Wavelet Independent Component Analysis combined with a novel component selection algorithm. The effectiveness of the proposed algorithm is demonstrated using data collected in neurophysiologcal experiments.

An improved qEEG index for asymmetry detection during the Wada test

The Wada test is commonly used to evaluate language and memory lateralization in candidates for epilepsy surgery. The spatial Brain Symmetry Index (BSI) quantifies inter-hemispheric differences in the EEG. Its application has been shown to be feasible during Wada testing. We developed a method for the quantification of EEG asymmetry that matches visual assessments of the EEG better than BSI. Fifty-three patients' EEG data, with a total of 85 injections were analyzed. In a step-wise, data-driven manner, multiple electrode and frequency band combinations were evaluated. Eventually, BSI, calculated using only the frontal electrodes F3 and F4, was combined with a temporal measure of delta power in the central electrodes, C3 and C4, into a new measure: cBSI. Using the area under the ROC curve (AUC), we showed that cBSI performs significantly better relative to BSI (median AUC 0.98 versus 0.96, p=0.0015, Wilcoxon signed rank test). Our results showed that asymmetry detection was significantly improved by combining temporal with spatial qEEG measures. In the future, our combined qEEG measure could allow for a more objective way of monitoring EEG asymmetry, thereby increasing the feasibility of using EEG as a monitoring tool during the Wada test. Future studies should, however, validate our cBSI method in real time in the operating room or radiology suite.

Comparing the Performance of Popular MEG/EEG Artifact Correction Methods in an Evoked-Response Study

We here compared results achieved by applying popular methods for reducing artifacts in magnetoencephalography (MEG) and electroencephalography (EEG) recordings of the auditory evoked Mismatch Negativity (MMN) responses in healthy adult subjects. We compared the Signal Space Separation (SSS) and temporal SSS (tSSS) methods for reducing noise from external and nearby sources. Our results showed that tSSS reduces the interference level more reliably than plain SSS, particularly for MEG gradiometers, also for healthy subjects not wearing strongly interfering magnetic material. Therefore, tSSS is recommended over SSS. Furthermore, we found that better artifact correction is achieved by applying Independent Component Analysis (ICA) in comparison to Signal Space Projection (SSP). Although SSP reduces the baseline noise level more than ICA, SSP also significantly reduces the signal—slightly more than it reduces the artifacts interfering with the signal. However, ICA also adds noise, or correction errors, to the waveform when the signal-to-noise ratio (SNR) in the original data is relatively low—in particular to EEG and to MEG magnetometer data. In conclusion, ICA is recommended over SSP, but one should be careful when applying ICA to reduce artifacts on neurophysiological data with relatively low SNR.

Discussion of Approach for Extracting Pure EOG Reference Signal from EEG Mixture Based on Wavelet Denoising Technique

Several problems in EEG-brain signal analysis are not solved, such as presence of an artifact during the recording process, particularly the eye artifact (ElectroOculoGram (EOG)) which makes the analysis of EEG-brain signals very difficult. Blind source separation technique is one of the important techniques used to clean the EEG signals from different types of artifacts. Independent component analysis (ICA) techniques are widely used for this purpose, but unfortunately the ICA techniques have inherent shortcoming such as source ambiguity and unordered components. Therefore, the researchers used ICA-Reference algorithm. The main problem in ICA-Reference algorithm is to find clean reference signal to extract the wanted signal. Recently, many algorithms proposed to generate the artifact reference, but unfortunately, clean artifact signal not satisfied. In this paper wavelet denoising technique is used to solve this problem by decompose the artifact reference signal into pure artifact signal and residual neural signal. The proposed algorithm used frontal channels instead of EOG channels to extract the EOG reference signal.

Quantitative EEG is an objective, sensitive, and reliable indicator of transient anesthetic effects during Wada tests

The intracarotid amobarbital or Wada procedure is a component of the presurgical evaluation for refractory epilepsy, during which monitoring the onset and offset of transient anesthetic effects is critical. In this study, the authors characterized changes of 8 quantitative measures during 26 Wada tests, which included alpha, beta, theta, and delta powers, alpha/delta power ratio, beta/delta power ratio, median amplitude-integrated EEG, and 90% spectral edge frequency (SEF90), and correlated them with contralateral hemiplegia. The authors found that on the side of injection, delta and theta powers, alpha/delta power ratio, beta/delta power ratio, and SEF90 peaked within 1 minute after injection of 70 to 150 mg amobarbital or 4 to 7 mg methohexital. When contralateral arm strength returned to 3/5, delta power and amplitude-integrated EEG decayed on average 24% and 19%, respectively, for amobarbital, similar to that of methohexital (27% and 18%). Because delta power resolution most closely mirrored that of the hemiplegia and amplitude-integrated EEG had the highest signal/noise ratio, these quantitative values appear to be the best measures for decay of anesthetic effects. Increase in alpha power persisted longest, and therefore may be the best measure of late residual anesthetic effects.

RECOVERING EEG SIGNALS: MUSCLE ARTIFACT SUPPRESSION USING WAVELET-ENHANCED, INDEPENDENT COMPONENT ANALYSIS INTEGRATED WITH ADAPTIVE FILTER

Independent component analysis (ICA) has been proven to be a powerful tool for removing artifacts from electroencephalogram (EEG) recordings in the form of blind source separation (BSS). Independent components (ICs) come from undesired sources that are mixed with the useful signal, and the assessment of such ICs allows them to be detected. But the unwanted ICs also can contain some useful information. To overcome this problem, wavelet-enhanced ICA (wICA) can be used, and this method applies a wavelet threshold for each wavelet coefficient to suppress abnormal deformation in each wavelet coefficient. Using the wICA algorithm to suppress artifacts provides an EEG signal with less distortion in the amplitude and in the phase of the cerebral part of the EEG, and the cerebral part of the EEG can be estimated and obtained very similar to control conditions. However, the EEG signals are affected by various artifact components, and those that have the greatest influence are electromyography (EMG) and electrooculography (EOG). These artifacts may appear simultaneously, randomly or interruptedly, so a fixed threshold level is not really appropriate. We proposed a system including wICA integrated with an adaptive filter model, and this combination system can provide the best prediction of the impacts of artifacts to set up a threshold value that is adaptive and suitable. Our experimental results showed that are approach provided better rejection of artifacts than the wICA system.

An automated algorithm to identify and reject artefacts for quantitative EEG analysis during sleep in patients with sleep-disordered breathing

PURPOSE

Large quantities of neurophysiological electroencephalogram (EEG) data are routinely collected in the sleep laboratory. These are underutilised due to the burden of managing artefact contamination. The aim of this study was to develop a new tool for automated artefact rejection that facilitates subsequent quantitative analysis of sleep EEG data collected during routine overnight polysomnography (PSG) in subjects with and without sleep-disordered breathing (SDB).

METHODS

We evaluated the accuracy of an automated algorithm to detect sleep EEG artefacts against artefacts manually scored by three experienced technologists (reference standard) in 40 PSGs. Spectral power was computed using artefact-free EEG data derived from (1) the reference standard, (2) the algorithm and (3) raw EEG without any prior artefact rejection.

RESULTS

The algorithm showed a high level of accuracy of 94.3, 94.7 and 95.8% for detecting artefacts during the entire PSG, NREM sleep and REM sleep, respectively. There was good to moderate sensitivity and excellent specificity of the algorithm detection capabilities during sleep. The EEG spectral power for the reference standard and algorithm was significantly lower than that of the raw, unprocessed EEG signal.

CONCLUSIONS

These preliminary findings support an automated way to process EEG artefacts during sleep, providing the opportunity to investigate EEG-based markers of neurobehavioural impairment in sleep disorders in future studies.