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Chen M, Liu J, Cao Y, Liu Q. The novel non-fully-fused ring small molecule acceptors: End-capped modification investigation. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 312:124034. [PMID: 38367344 DOI: 10.1016/j.saa.2024.124034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Revised: 12/15/2023] [Accepted: 02/09/2024] [Indexed: 02/19/2024]
Abstract
End-capped modification is an efficacious strategy for developing high-performance acceptor materials. In this paper, the experimentally synthesized A-D-A'-D-A type non-fully-fused ring acceptor IDTBT-4F (R) was used as a reference molecule, and five small molecule acceptors for R1-R5 were investigated by changing R's terminal functional groups. By using DFT/B3PW91/6-31G (d,p) method, the ground-state structures of all molecules were studied. The absorption spectra of these acceptors were gained by the TD-DFT/MPW1PW91/6-31G (d,p) approach. Meanwhile, the charge density difference and transition density matrix were analyzed effectively. It can be observed that, compared to the R molecule, all developed molecules exhibited narrower energy gaps, larger absorption wavelengths, more red-shifted absorption spectra, lower excitation energies, higher dipole moment and greater electron-accepting capacity. The strategy of functional group substitution is superior to halogen substitution in improving the aforementioned parameters. Both terminal π-extension and end-group chlorination strategies can synergistically enhance molecular performance. In addition, we also calculated the electron mobility of the dimers constructed by all the molecules, among which R1 and R4 molecules designed with -COOCH3 functional group substitution and R2 molecule with terminal chlorination achieved superior electron mobility compared to R molecule due to their significant electronic coupling. Overall, the study shows that the designed molecules can be highly effective candidates for applications of organic solar cells.
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Affiliation(s)
- Minmin Chen
- College of Science, Jiamusi University, Jiamusi 154007, Heilongjiang, China
| | - Jinglin Liu
- College of Science, Jiamusi University, Jiamusi 154007, Heilongjiang, China.
| | - Yajie Cao
- College of Science, Jiamusi University, Jiamusi 154007, Heilongjiang, China
| | - Qian Liu
- Department of Applied Physics, Xi'an University of Technology, Xi'an 710054, Shaanxi, China.
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2
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Borges RS, Aguiar CPO, Oliveira NLL, Amaral INA, Vale JKL, Chaves Neto AMJ, Queiroz AN, da Silva ABF. Antioxidant capacity of simplified oxygen heterocycles and proposed derivatives by theoretical calculations. J Mol Model 2023; 29:232. [PMID: 37407749 DOI: 10.1007/s00894-023-05602-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2022] [Accepted: 05/22/2023] [Indexed: 07/07/2023]
Abstract
CONTEXT Some structural properties can be involved in the antioxidant capacity of several polyphenol derivatives, among them their simplified structures. This study examines the contribution of simplified structure for the antioxidant capacity of some natural and synthetic antioxidants. The resonance structures were related to the π-type electron system of carbon-carbon double bonds between both phenyl rings. Trans-resveratrol, phenyl-benzofuran, phenyl-indenone, and benzylidene-benzofuranone are the best basic antioxidant templates among the simplified derivatives studied here. Additionally, the stilbene moiety was found on the molecules with the best antioxidant capacity. Furthermore, our investigation suggests that these compounds can be used as antioxidant scaffold for designing and developing of new promising derivatives. METHODS To investigate the structure-antioxidant capacity for sixteen simplified natural and proposed derivatives we have employed density functional theory and used Gaussian 09. Our DFT calculations were performed using the B3LYP functional and the 6-31+G(d,p) basis set. All electron transfer mechanisms were investigated by using values of HOMO, ionization potential, energy affinity, stabilization energies, and spin density distributions.
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Affiliation(s)
- Rosivaldo S Borges
- Núcleo de Estudos e Seleção de Compostos Bioativos, Instituto de Ciências da Saúde, Universidade Federal do Pará, Belém, PA, 66075-110, Brazil.
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, São Carlos, SP, 13560-970, Brazil.
| | - Christiane P O Aguiar
- Núcleo de Estudos e Seleção de Compostos Bioativos, Instituto de Ciências da Saúde, Universidade Federal do Pará, Belém, PA, 66075-110, Brazil
| | - Nicole L L Oliveira
- Núcleo de Estudos e Seleção de Compostos Bioativos, Instituto de Ciências da Saúde, Universidade Federal do Pará, Belém, PA, 66075-110, Brazil
| | - Israel N A Amaral
- Núcleo de Estudos e Seleção de Compostos Bioativos, Instituto de Ciências da Saúde, Universidade Federal do Pará, Belém, PA, 66075-110, Brazil
| | - Joyce K L Vale
- Núcleo de Estudos e Seleção de Compostos Bioativos, Instituto de Ciências da Saúde, Universidade Federal do Pará, Belém, PA, 66075-110, Brazil
| | - Antonio M J Chaves Neto
- Faculdade de Física, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, PA, 66075-110, Brazil
| | - Auriekson N Queiroz
- Núcleo de Estudos e Seleção de Compostos Bioativos, Instituto de Ciências da Saúde, Universidade Federal do Pará, Belém, PA, 66075-110, Brazil
| | - Albérico B F da Silva
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, São Carlos, SP, 13560-970, Brazil
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3
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Carter-Fenk K, Cunha LA, Arias-Martinez JE, Head-Gordon M. Electron-Affinity Time-Dependent Density Functional Theory: Formalism and Applications to Core-Excited States. J Phys Chem Lett 2022; 13:9664-9672. [PMID: 36215404 DOI: 10.1021/acs.jpclett.2c02564] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
The lack of particle-hole attraction and orbital relaxation within time-dependent density functional theory (TDDFT) lead to extreme errors in the prediction of K-edge X-ray absorption spectra (XAS). We derive a linear-response formalism that uses optimized orbitals of the n - 1-electron system as the reference, building orbital relaxation and a proper hole into the initial density. Our approach is an exact generalization of the static-exchange approximation that ameliorates the particle-hole interaction error associated with the adiabatic approximation and reduces errors in TDDFT XAS by orders of magnitude. With a statistical performance of just 0.5 eV root-mean-square error and the same computational scaling as TDDFT under the core-valence separation approximation, we anticipate that this approach will be of great utility in XAS calculations of large systems.
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Affiliation(s)
- Kevin Carter-Fenk
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California94720, United States
| | - Leonardo A Cunha
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California94720, United States
| | - Juan E Arias-Martinez
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California94720, United States
| | - Martin Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California94720, United States
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5
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Lee JWL, Tikhonov DS, Chopra P, Maclot S, Steber AL, Gruet S, Allum F, Boll R, Cheng X, Düsterer S, Erk B, Garg D, He L, Heathcote D, Johny M, Kazemi MM, Köckert H, Lahl J, Lemmens AK, Loru D, Mason R, Müller E, Mullins T, Olshin P, Passow C, Peschel J, Ramm D, Rompotis D, Schirmel N, Trippel S, Wiese J, Ziaee F, Bari S, Burt M, Küpper J, Rijs AM, Rolles D, Techert S, Eng-Johnsson P, Brouard M, Vallance C, Manschwetus B, Schnell M. Time-resolved relaxation and fragmentation of polycyclic aromatic hydrocarbons investigated in the ultrafast XUV-IR regime. Nat Commun 2021; 12:6107. [PMID: 34671016 PMCID: PMC8528970 DOI: 10.1038/s41467-021-26193-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 09/17/2021] [Indexed: 11/18/2022] Open
Abstract
Polycyclic aromatic hydrocarbons (PAHs) play an important role in interstellar chemistry and are subject to high energy photons that can induce excitation, ionization, and fragmentation. Previous studies have demonstrated electronic relaxation of parent PAH monocations over 10-100 femtoseconds as a result of beyond-Born-Oppenheimer coupling between the electronic and nuclear dynamics. Here, we investigate three PAH molecules: fluorene, phenanthrene, and pyrene, using ultrafast XUV and IR laser pulses. Simultaneous measurements of the ion yields, ion momenta, and electron momenta as a function of laser pulse delay allow a detailed insight into the various molecular processes. We report relaxation times for the electronically excited PAH*, PAH+* and PAH2+* states, and show the time-dependent conversion between fragmentation pathways. Additionally, using recoil-frame covariance analysis between ion images, we demonstrate that the dissociation of the PAH2+ ions favors reaction pathways involving two-body breakup and/or loss of neutral fragments totaling an even number of carbon atoms.
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Affiliation(s)
- J. W. L. Lee
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.4991.50000 0004 1936 8948The Chemistry Research Laboratory, University of Oxford, Oxford, United Kingdom
| | - D. S. Tikhonov
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.9764.c0000 0001 2153 9986Institute of Physical Chemistry, Christian-Albrechts-Universität zu Kiel, Kiel, Germany
| | - P. Chopra
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.9764.c0000 0001 2153 9986Institute of Physical Chemistry, Christian-Albrechts-Universität zu Kiel, Kiel, Germany
| | - S. Maclot
- grid.4514.40000 0001 0930 2361Department of Physics, Lund University, Lund, Sweden ,grid.8761.80000 0000 9919 9582Physics Department, University of Gothenburg, Gothenburg, Sweden
| | - A. L. Steber
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.9764.c0000 0001 2153 9986Institute of Physical Chemistry, Christian-Albrechts-Universität zu Kiel, Kiel, Germany ,grid.9026.d0000 0001 2287 2617Center for Ultrafast Imaging, Universität Hamburg, Hamburg, Germany
| | - S. Gruet
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - F. Allum
- grid.4991.50000 0004 1936 8948The Chemistry Research Laboratory, University of Oxford, Oxford, United Kingdom
| | - R. Boll
- grid.434729.f0000 0004 0590 2900European XFEL, Schenefeld, Germany
| | - X. Cheng
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - S. Düsterer
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - B. Erk
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - D. Garg
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.9026.d0000 0001 2287 2617Department of Physics, Universität Hamburg, Hamburg, Germany
| | - L. He
- grid.7683.a0000 0004 0492 0453Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - D. Heathcote
- grid.4991.50000 0004 1936 8948The Chemistry Research Laboratory, University of Oxford, Oxford, United Kingdom
| | - M. Johny
- grid.7683.a0000 0004 0492 0453Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - M. M. Kazemi
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - H. Köckert
- grid.4991.50000 0004 1936 8948The Chemistry Research Laboratory, University of Oxford, Oxford, United Kingdom
| | - J. Lahl
- grid.4514.40000 0001 0930 2361Department of Physics, Lund University, Lund, Sweden
| | - A. K. Lemmens
- grid.5590.90000000122931605Radboud University, FELIX Laboratory, Nijmegen, The Netherlands ,grid.7177.60000000084992262Van’t Hoff Institute for Molecular Sciences, University of Amsterdam, Amsterdam, The Netherlands
| | - D. Loru
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.9764.c0000 0001 2153 9986Institute of Physical Chemistry, Christian-Albrechts-Universität zu Kiel, Kiel, Germany
| | - R. Mason
- grid.4991.50000 0004 1936 8948The Chemistry Research Laboratory, University of Oxford, Oxford, United Kingdom
| | - E. Müller
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - T. Mullins
- grid.7683.a0000 0004 0492 0453Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - P. Olshin
- grid.15447.330000 0001 2289 6897Saint Petersburg State University, Saint Petersburg, Russia
| | - C. Passow
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - J. Peschel
- grid.4514.40000 0001 0930 2361Department of Physics, Lund University, Lund, Sweden
| | - D. Ramm
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - D. Rompotis
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.434729.f0000 0004 0590 2900European XFEL, Schenefeld, Germany
| | - N. Schirmel
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - S. Trippel
- grid.9026.d0000 0001 2287 2617Center for Ultrafast Imaging, Universität Hamburg, Hamburg, Germany ,grid.7683.a0000 0004 0492 0453Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - J. Wiese
- grid.7683.a0000 0004 0492 0453Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.9026.d0000 0001 2287 2617Department of Chemistry, Universität Hamburg, Hamburg, Germany
| | - F. Ziaee
- grid.36567.310000 0001 0737 1259J.R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, KS USA
| | - S. Bari
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - M. Burt
- grid.4991.50000 0004 1936 8948The Chemistry Research Laboratory, University of Oxford, Oxford, United Kingdom
| | - J. Küpper
- grid.9026.d0000 0001 2287 2617Center for Ultrafast Imaging, Universität Hamburg, Hamburg, Germany ,grid.9026.d0000 0001 2287 2617Department of Physics, Universität Hamburg, Hamburg, Germany ,grid.7683.a0000 0004 0492 0453Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.9026.d0000 0001 2287 2617Department of Chemistry, Universität Hamburg, Hamburg, Germany
| | - A. M. Rijs
- grid.5590.90000000122931605Radboud University, FELIX Laboratory, Nijmegen, The Netherlands ,grid.12380.380000 0004 1754 9227Division of BioAnalytical Chemistry, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
| | - D. Rolles
- grid.36567.310000 0001 0737 1259J.R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, KS USA
| | - S. Techert
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.7450.60000 0001 2364 4210Institute for X-Ray Physics, Georg-August-Universität, Göttingen, Germany
| | - P. Eng-Johnsson
- grid.4514.40000 0001 0930 2361Department of Physics, Lund University, Lund, Sweden
| | - M. Brouard
- grid.4991.50000 0004 1936 8948The Chemistry Research Laboratory, University of Oxford, Oxford, United Kingdom
| | - C. Vallance
- grid.4991.50000 0004 1936 8948The Chemistry Research Laboratory, University of Oxford, Oxford, United Kingdom
| | - B. Manschwetus
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany
| | - M. Schnell
- grid.7683.a0000 0004 0492 0453Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany ,grid.9764.c0000 0001 2153 9986Institute of Physical Chemistry, Christian-Albrechts-Universität zu Kiel, Kiel, Germany
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9
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Zhou Z, Hu Z, Zhang X, Jia M, Wang X, Su H, Sun H, Chen J, Xu J. pH Controlled Intersystem Crossing and Singlet Oxygen Generation of 8-Azaadenine in Aqueous Solution. Chemphyschem 2019; 20:757-765. [PMID: 30702794 DOI: 10.1002/cphc.201800969] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 01/30/2019] [Indexed: 01/01/2023]
Abstract
Azabases are intriguing DNA and RNA analogues and have been used as effective antiviral and anticancer medicines. However, photosensitivity of these drugs has also been reported. Here, pH-controlled intersystem crossing (ISC) process of 9H 8-azaadenine (8-AA) in aqueous solution is reported. Broadband transient absorption measurements reveal that the hydrogen atom at N9 position can greatly affect ISC of 8-AA and ISC is more favorable when 8-AA is in its neutral form in aqueous solution. The initial excited ππ* (S2 ) state evolves through ultrafast internal conversion (IC) (4.2 ps) to the lower-lying nπ* state (S1 ), which further stands as a door way state for ISC with a time constant of 160 ps. The triplet state has a lifetime of 6.1 μs. On the other hand, deprotonation at N9 position promotes the IC from the ππ* (S2 ) state to the ground state (S0 ) and the lifetime of the S2 state is determined to be 10 ps. The experimental results are further supported by time-dependent density functional theory (TDDFT) calculations. Singlet oxygen generation yield is measured to be 13.8 % for the neutral 8-AA while the deprotonated one exhibit much lower yield (<2 %), implying that this compound could be a potential pH-sensitized photodynamic therapy agent.
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Affiliation(s)
- Zhongneng Zhou
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200062, China
| | - Zhubin Hu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200062, China
| | - Xianwang Zhang
- College of Chemistry, Beijing Normal University, Beijing, 100875, China
| | - Menghui Jia
- Shanghai Institute of Optics and Fine Mechanics, Shanghai, 201800, China
| | - Xueli Wang
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200062, China
| | - Hongmei Su
- College of Chemistry, Beijing Normal University, Beijing, 100875, China
| | - Haitao Sun
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200062, China
| | - Jinquan Chen
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200062, China.,Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi, 030006, China
| | - Jianhua Xu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, 200062, China.,Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi, 030006, China
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