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Weaver JB, Weaver CV, Ness DB, Gordon-Wylie SW, Demidenko E. One-Sided Multidimensional Statistical Significance Testing: A New Method of Calculating the Statistical Significance of Spectra Used to Demonstrate Magnetic Nanoparticle Sensitivity. JOURNAL OF PHYSICS D: APPLIED PHYSICS 2022; 55:325001. [PMID: 35726230 PMCID: PMC9206232 DOI: 10.1088/1361-6463/ac7012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Estimating statistical significance of the difference between two spectra or series is a fundamental statistical problem. Multivariate significance tests exist but the limitations preclude their use in many common cases; e.g., one-sided testing, unequal variance and when few repetitions are acquired all of which are required in magnetic spectroscopy of nanoparticle Brownian motion (MSB). We introduce a test, termed the T-S test, that is powerful and exact (exact type I error). It is flexible enough to be one- or two-sided and the one-sided version can specify arbitrary regions where each spectrum should be larger. The T-S test takes the-one or two-sided p-value at each frequency and combines them using Stouffer's method. We evaluated it using simulated spectra and measured MSB spectra. For the single-sided version, mean of the spectrum, A-T, was used as a reference; the T-S test is as powerful when the variance at each frequency is uniform and outperforms when the noise power is not uniform. For the two-sided version, the Hotelling T2 two-sided multivariate test was used as a reference; the two-sided T-S test is only slightly less powerful for large numbers of repetitions and outperforms rather dramatically for small numbers of repetitions. The T-S test was used to estimate the sensitivity of our current MSB spectrometer showing 1 nanogram sensitivity. Using eight repetitions the T-S test allowed 15 pM concentrations of mouse IL-6 to be identified while the mean of the spectra only identified 76 pM.
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Affiliation(s)
- John B. Weaver
- Department of Radiology, Dartmouth-Hitchcock Medical Center and Geisel School of Medicine at Dartmouth, the Department of Physics, Thayer School of Engineering, Dartmouth College
| | - Claire V. Weaver
- Dept. of Epidemiology, Geisel School of Medicine at Dartmouth College, presently at Eastern Virginia Medical School
| | - Dylan B. Ness
- Norris Cotton Cancer Center, The Geisel School of Medicine at Dartmouth, & Department of Medicine, Dartmouth-Hitchcock Medical Center
| | | | - Eugene Demidenko
- Department of Biomedical Data Science, Geisel School of Medicine at Dartmouth
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Wu K, Chugh VK, di Girolamo A, Liu J, Saha R, Su D, Krishna VD, Nair A, Davies W, Wang YA, Cheeran MCJ, Wang JP. A Portable Magnetic Particle Spectrometer for Future Rapid and Wash-Free Bioassays. ACS APPLIED MATERIALS & INTERFACES 2021; 13:7966-7976. [PMID: 33566573 PMCID: PMC9053107 DOI: 10.1021/acsami.0c21040] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Nowadays, there is an increasing demand for more accessible routine diagnostics for patients with respect to high accuracy, ease of use, and low cost. However, the quantitative and high accuracy bioassays in large hospitals and laboratories usually require trained technicians and equipment that is both bulky and expensive. In addition, the multistep bioassays and long turnaround time could severely affect the disease surveillance and control especially in pandemics such as influenza and COVID-19. In view of this, a portable, quantitative bioassay device will be valuable in regions with scarce medical resources and help relieve burden on local healthcare systems. Herein, we introduce the MagiCoil diagnostic device, an inexpensive, portable, quantitative, and rapid bioassay platform based on the magnetic particle spectrometer (MPS) technique. MPS detects the dynamic magnetic responses of magnetic nanoparticles (MNPs) and uses the harmonics from oscillating MNPs as metrics for sensitive and quantitative bioassays. This device does not require trained technicians to operate and employs a fully automatic, one-step, and wash-free assay with a user friendly smartphone interface. Using a streptavidin-biotin binding system as a model, we show that the detection limit of the current portable device for streptavidin is 64 nM (equal to 5.12 pmole). In addition, this MPS technique is very versatile and allows for the detection of different diseases just by changing the surface modifications on MNPs. Although MPS-based bioassays show high sensitivities as reported in many literatures, at the current stage, this portable device faces insufficient sensitivity and needs further improvements. It is foreseen that this kind of portable device can transform the multistep, laboratory-based bioassays to one-step field testing in nonclinical settings such as schools, homes, offices, etc.
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Affiliation(s)
| | | | - Arturo di Girolamo
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Jinming Liu
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Renata Saha
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Diqing Su
- Department of Chemical Engineering and Material Science, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Venkatramana D. Krishna
- Department of Veterinary Population Medicine, University of Minnesota, St. Paul, Minnesota 55108, United States
| | - Abilash Nair
- Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Will Davies
- Department of Computer Science, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | | | - Maxim C-J Cheeran
- Department of Veterinary Population Medicine, University of Minnesota, St. Paul, Minnesota 55108, United States
| | - Jian-Ping Wang
- Department of Electrical and Computer Engineering and Department of Chemical Engineering and Material Science, University of Minnesota, Minneapolis, Minnesota 55455, United States
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van de Loosdrecht MM, Abelmann L, Ten Haken B. Experimental comparison of four nonlinear magnetic detection methods and considerations on clinical usability. Biomed Phys Eng Express 2020; 7. [PMID: 34037534 DOI: 10.1088/2057-1976/abce90] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Accepted: 11/27/2020] [Indexed: 11/12/2022]
Abstract
Superparamagnetic iron oxide nanoparticles (SPIONs) are promising for clinical applications, because they have a characteristic nonlinear magnetic response when an external magnetic field is applied. This nonlinearity enables the distinct detection of SPIONs and makes measurements less sensitive to the human body and surgical steel instruments. In clinical applications, only a limited field strength for the magnetic detection is allowed. The signal to noise ratios (SNRs) of four nonlinear magnetic detection methods are compared. These methods include differential magnetometry and three variations of magnetic particle spectroscopy: frequency mixing, second harmonic detection and third harmonic detection. All methods were implemented on the same hardware and experimentally compared for various field strengths. To make the comparison fair, the same power was supplied to the excitation coil each time. In general, the SNR increases with increasing field strength. The SNR per drive field of all methods stabilizes or even decreases for field strengths above 6 mT. The second harmonic detection has the best SNR and the most room for improvement.
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Affiliation(s)
- M M van de Loosdrecht
- Magnetic Detection and Imaging, Technical Medical Centre, University of Twente, Enschede, The Netherlands
| | | | - B Ten Haken
- Magnetic Detection and Imaging, Technical Medical Centre, University of Twente, Enschede, The Netherlands
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Shi Y, Jyoti D, Gordon-Wylie SW, Weaver JB. Quantification of magnetic nanoparticles by compensating for multiple environment changes simultaneously. NANOSCALE 2020; 12:195-200. [PMID: 31807744 PMCID: PMC6936736 DOI: 10.1039/c9nr08258a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
The quantification of magnetic nanoparticles is important for many applications, especially for in vivo biosensing. The magnetization harmonics used in spectroscopy of magnetic nanoparticles can be used to estimate nanoparticle number or weight. However, other effects such as temperature or relaxation time change can also influence the nanoparticle magnetization. Therefore, it is necessary to compensate for these factors when estimating the amount of magnetic nanoparticles. This paper shows through simulation that a two-dimensional scaling method can be used to improve the accuracy of nanoparticle quantification, especially when multiple effects are present which can influence the nanoparticle magnetization. Finally, an experiment was performed on a Magnetic Spectroscopy of Brownian motion (MSB) apparatus to demonstrate this method, and nanoparticle weight was determined with a mean error of 1.3 ng (1.81%).
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Affiliation(s)
- Yipeng Shi
- Department of Physics & Astronomy, Dartmouth College, Hanover, NH 03755, USA.
| | - Dhrubo Jyoti
- Dartmouth-Hitchcock Medical Center, LebanonNH 03756, USA
| | | | - John B Weaver
- Department of Physics & Astronomy, Dartmouth College, Hanover, NH 03755, USA. and Dartmouth-Hitchcock Medical Center, LebanonNH 03756, USA and Department of Radiology, Geisel School of Medicine at Dartmouth College, Hanover, NH 03755, USA and Thayer School of Engineering, Dartmouth College, Hanover, NH 03755, USA
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Shi Y, Weaver JB. Concurrent quantification of magnetic nanoparticles temperature and relaxation time. Med Phys 2019; 46:4070-4076. [PMID: 31209904 DOI: 10.1002/mp.13655] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Revised: 03/11/2019] [Accepted: 04/24/2019] [Indexed: 01/31/2023] Open
Abstract
PURPOSE The harmonic spectrum of the magnetization of magnetic nanoparticles (MNPs) in the presence of an applied magnetic field can be used to characterize the properties of the microenvironment of the MNPs. The change in temperature and relaxation time has been measured by varying the magnetic field amplitudes or frequency to obtain the harmonic spectrum. However, scaling estimates of temperature or relaxation time are poor if both change simultaneously. In this work, we show that scaling over both the amplitude and frequency of the applied magnetic field allows both the temperature and relaxation to be estimated simultaneously. METHODS The scaling methods previously used to measure temperature and relaxation times individually have been expanded to two dimensions allowing both parameters to be estimated simultaneously. Samples with different temperature and relaxation times were measured using a magnetic nanoparticle spectrometer to verify this two-dimensional scaling method. Simulations were also carried out for a range of nanoparticle sizes, and the best particle sizes were estimated for this two-dimensional method. RESULTS The two-dimensional scaling method achieved a mean error of 0.83% for relaxation time by considering the temperature variation as well as relaxation time changes. The temperature and viscosity of the MNPs were measured simultaneously with the mean error of 1.03°C and 0.011 mPas. For monodisperse particles with Brownian relaxation, simulation showed that core radius of 16 nm and hydrodynamic radius of 23 nm had best accuracy for the scaling method. CONCLUSIONS The two-dimensional scaling method allows both temperature and relaxation time to be estimated simultaneously. The measurement accuracy can be improved by combining information in ratios and phases of the magnetic harmonics of the magnetization and by choosing the optimal particle sizes.
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Affiliation(s)
- Yipeng Shi
- Department of Physics, Dartmouth College, Hanover, NH, 03755, USA
| | - John B Weaver
- Department of Physics, Dartmouth College, Hanover, NH, 03755, USA.,Dartmouth-Hitchcock Medical Center, Lebanon, NH, 03756, USA.,Department of Radiology, Geisel School of Medicine at Dartmouth College, Hanover, NH, 03755, USA.,Thayer School of Engineering, Dartmouth College, Hanover, NH, 03755, USA
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Khurshid H, Shi Y, Berwin BL, Weaver JB. Evaluating blood clot progression using magnetic particle spectroscopy. Med Phys 2018; 45:3258-3263. [PMID: 29772078 DOI: 10.1002/mp.12983] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Revised: 04/16/2018] [Accepted: 04/16/2018] [Indexed: 02/04/2023] Open
Abstract
PURPOSE To evaluate the thrombus maturity noninvasively providing the promise of much earlier and more accurate diagnosis of diseases ranging from stroke to myocardial infarction to deep vein thrombosis. METHODS Magnetic spectroscopy of nanoparticle Brownian rotation (MSB), a form of magnetic particle spectroscopy sensitive to Brownian rotation of magnetic nanoparticles, was used for the detection and characterization of blood clots. The nanoparticles' relaxation time was quantified by scaling the MSB spectra in frequency to match the spectra from nanoparticles in a reference state. The nanoparticles' relaxation time, in the bound state, was used to characterize the nanoparticle binding to thrombin on the blood clot. The number of nanoparticles bound to the clot was also estimated. Both the relaxation time and the weight of bound nanoparticles were obtained for clots of several ages, reflecting different stages of development and organization. The impact of clot development was explored using functionalized nanoparticles present during clot formation. RESULTS The relaxation time of the bound nanoparticles decreases for more mature, organized clots. The number of nanoparticles able to bind the clot diminishes quantitatively with clot age. On mature clots, the nanoparticles bind the thrombin on the surface while for developing clots the nanoparticles bind several thrombin molecules or become trapped in the clot matrix during formation. CONCLUSIONS By estimating the magnetic nanoparticles' relaxation time the clot age and organization can be predicted. The purposed methods are quick and minimally invasive for in vivo applications.
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Affiliation(s)
- Hafsa Khurshid
- Department of Radiology, Dartmouth-Hitchcock Medical Center, Lebanon, NH, 03756, USA.,Department of Applied Physics and Astronomy, University of Sharjah, Sharjah, 27272, UAE
| | - Yipeng Shi
- Department of Physics, Dartmouth College, Hanover, NH, 03755, USA
| | - Brent L Berwin
- Department of Microbiology and Immunology, Geisel School of Medicine, Hanover, NH, 03755, USA
| | - John B Weaver
- Department of Radiology, Dartmouth-Hitchcock Medical Center, Lebanon, NH, 03756, USA.,Department of Physics, Dartmouth College, Hanover, NH, 03755, USA.,Thayer School of Engineering, Dartmouth College, Hanover, NH, 03755, USA
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