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For: Zhou HX. How do biomolecular systems speed up and regulate rates? Phys Biol 2005;2:R1-25. [PMID: 16224118 DOI: 10.1088/1478-3975/2/3/r01] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Number Cited by Other Article(s)
1
Ghosal A. Statistics of Reaction Flux and Dynamical Activity Associated with a Diffusion-Influenced Ligand-Binding Reaction. J Phys Chem B 2021;125:1760-1767. [PMID: 33565882 DOI: 10.1021/acs.jpcb.0c10350] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
2
Rahmaninejad H, Pace T, Bhatt S, Sun B, Kekenes-Huskey P. Co-localization and confinement of ecto-nucleotidases modulate extracellular adenosine nucleotide distributions. PLoS Comput Biol 2020;16:e1007903. [PMID: 32584811 PMCID: PMC7316229 DOI: 10.1371/journal.pcbi.1007903] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Accepted: 04/22/2020] [Indexed: 12/30/2022]  Open
3
Gopich IV, Szabo A. Diffusion-induced competitive two-site binding. J Chem Phys 2019;150:094104. [PMID: 30849890 DOI: 10.1063/1.5079748] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
4
Meisl G, Yang X, Dobson CM, Linse S, Knowles TPJ. Modulation of electrostatic interactions to reveal a reaction network unifying the aggregation behaviour of the Aβ42 peptide and its variants. Chem Sci 2017;8:4352-4362. [PMID: 28979758 PMCID: PMC5580342 DOI: 10.1039/c7sc00215g] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2017] [Accepted: 04/03/2017] [Indexed: 01/07/2023]  Open
5
Berndt C, Schwenn JD, Lillig CH. The specificity of thioredoxins and glutaredoxins is determined by electrostatic and geometric complementarity. Chem Sci 2015;6:7049-7058. [PMID: 29861944 PMCID: PMC5947528 DOI: 10.1039/c5sc01501d] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2015] [Accepted: 09/08/2015] [Indexed: 02/06/2023]  Open
6
Eun C, Kekenes-Huskey PM, Metzger VT, McCammon JA. A model study of sequential enzyme reactions and electrostatic channeling. J Chem Phys 2014;140:105101. [PMID: 24628210 DOI: 10.1063/1.4867286] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
7
Chu X, Wang Y, Gan L, Bai Y, Han W, Wang E, Wang J. Importance of electrostatic interactions in the association of intrinsically disordered histone chaperone Chz1 and histone H2A.Z-H2B. PLoS Comput Biol 2012;8:e1002608. [PMID: 22807669 PMCID: PMC3395605 DOI: 10.1371/journal.pcbi.1002608] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2012] [Accepted: 05/21/2012] [Indexed: 11/21/2022]  Open
8
Park KH, Kim TJ, Kim HJ. Facilitated Protein-DNA Binding: Theory and Monte Carlo Simulation. B KOREAN CHEM SOC 2012. [DOI: 10.5012/bkcs.2012.33.3.971] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
9
Intrinsically disordered proteins may escape unwanted interactions via functional misfolding. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2011;1814:693-712. [DOI: 10.1016/j.bbapap.2011.03.010] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2011] [Revised: 02/16/2011] [Accepted: 03/16/2011] [Indexed: 12/30/2022]
10
Plešková V, Kašparovský T, Obořil M, Ptáčková N, Chaloupková R, Ladislav D, Damborský J, Lochman J. Elicitin-membrane interaction is driven by a positive charge on the protein surface: role of Lys13 residue in lipids loading and resistance induction. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2011;49:321-8. [PMID: 21296584 DOI: 10.1016/j.plaphy.2011.01.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2010] [Revised: 12/18/2010] [Accepted: 01/02/2011] [Indexed: 05/24/2023]
11
Boivin S, Hart DJ. Interaction of the influenza A virus polymerase PB2 C-terminal region with importin alpha isoforms provides insights into host adaptation and polymerase assembly. J Biol Chem 2011;286:10439-48. [PMID: 21216958 DOI: 10.1074/jbc.m110.182964] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
12
Huang Y, Liu Z. Nonnative interactions in coupled folding and binding processes of intrinsically disordered proteins. PLoS One 2010;5:e15375. [PMID: 21079758 PMCID: PMC2973977 DOI: 10.1371/journal.pone.0015375] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2010] [Accepted: 08/18/2010] [Indexed: 11/19/2022]  Open
13
Schreiber G, Haran G, Zhou HX. Fundamental aspects of protein-protein association kinetics. Chem Rev 2010;109:839-60. [PMID: 19196002 DOI: 10.1021/cr800373w] [Citation(s) in RCA: 555] [Impact Index Per Article: 39.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
14
Zhou HX. Rate theories for biologists. Q Rev Biophys 2010;43:219-93. [PMID: 20691138 PMCID: PMC3540998 DOI: 10.1017/s0033583510000120] [Citation(s) in RCA: 115] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
15
Kinetic advantage of intrinsically disordered proteins in coupled folding-binding process: a critical assessment of the "fly-casting" mechanism. J Mol Biol 2009;393:1143-59. [PMID: 19747922 DOI: 10.1016/j.jmb.2009.09.010] [Citation(s) in RCA: 212] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2009] [Revised: 06/29/2009] [Accepted: 09/04/2009] [Indexed: 11/20/2022]
16
Demers JP, Mittermaier A. Binding mechanism of an SH3 domain studied by NMR and ITC. J Am Chem Soc 2009;131:4355-67. [PMID: 19267471 DOI: 10.1021/ja808255d] [Citation(s) in RCA: 91] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
17
Zhou HX. A minimum-reaction-flux solution to master-equation models of protein folding. J Chem Phys 2008;128:195104. [PMID: 18500902 DOI: 10.1063/1.2929824] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
18
Mukherjee S, Chowdhury P, Bunagan MR, Gai F. Folding Kinetics of a Naturally Occurring Helical Peptide: Implication of the Folding Speed Limit of Helical Proteins. J Phys Chem B 2008;112:9146-50. [DOI: 10.1021/jp801721p] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
19
Alsallaq R, Zhou HX. Protein association with circular DNA: Rate enhancement by nonspecific binding. J Chem Phys 2008;128:115108. [DOI: 10.1063/1.2888996] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
20
Zhou HX, Qin S, Tjong H. Modeling Protein–Protein and Protein–Nucleic Acid Interactions: Structure, Thermodynamics, and Kinetics. ANNUAL REPORTS IN COMPUTATIONAL CHEMISTRY 2008. [DOI: 10.1016/s1574-1400(08)00004-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
21
Alsallaq R, Zhou HX. Prediction of protein-protein association rates from a transition-state theory. Structure 2007;15:215-24. [PMID: 17292839 DOI: 10.1016/j.str.2007.01.005] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2006] [Revised: 12/27/2006] [Accepted: 01/02/2007] [Indexed: 11/24/2022]
22
Alsallaq R, Zhou HX. Energy landscape and transition state of protein-protein association. Biophys J 2006;92:1486-502. [PMID: 17142273 PMCID: PMC1796829 DOI: 10.1529/biophysj.106.096024] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
23
Huang X, Zhou HX. Similarity and difference in the unfolding of thermophilic and mesophilic cold shock proteins studied by molecular dynamics simulations. Biophys J 2006;91:2451-63. [PMID: 16844745 PMCID: PMC1562390 DOI: 10.1529/biophysj.106.082891] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
24
Mather WH, Fox RF. Kinesin's biased stepping mechanism: amplification of neck linker zippering. Biophys J 2006;91:2416-26. [PMID: 16844749 PMCID: PMC1562392 DOI: 10.1529/biophysj.106.087049] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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