Neuro-fuzzy decoding of sensory information from ensembles of simultaneously recorded dorsal root ganglion neurons for functional electrical stimulation applications

Decoding Bilateral Hindlimb Kinematics From Cat Spinal Signals Using Three-Dimensional Convolutional Neural Network

To date, decoding limb kinematic information mostly relies on neural signals recorded from the peripheral nerve, dorsal root ganglia (DRG), ventral roots, spinal cord gray matter, and the sensorimotor cortex. In the current study, we demonstrated that the neural signals recorded from the lateral and dorsal columns within the spinal cord have the potential to decode hindlimb kinematics during locomotion. Experiments were conducted using intact cats. The cats were trained to walk on a moving belt in a hindlimb-only condition, while their forelimbs were kept on the front body of the treadmill. The bilateral hindlimb joint angles were decoded using local field potential signals recorded using a microelectrode array implanted in the dorsal and lateral columns of both the left and right sides of the cat spinal cord. The results show that contralateral hindlimb kinematics can be decoded as accurately as ipsilateral kinematics. Interestingly, hindlimb kinematics of both legs can be accurately decoded from the lateral columns within one side of the spinal cord during hindlimb-only locomotion. The results indicated that there was no significant difference between the decoding performances obtained using neural signals recorded from the dorsal and lateral columns. The results of the time-frequency analysis show that event-related synchronization (ERS) and event-related desynchronization (ERD) patterns in all frequency bands could reveal the dynamics of the neural signals during movement. The onset and offset of the movement can be clearly identified by the ERD/ERS patterns. The results of the mutual information (MI) analysis showed that the theta frequency band contained significantly more limb kinematics information than the other frequency bands. Moreover, the theta power increased with a higher locomotion speed.

High-density neural recordings from feline sacral dorsal root ganglia with thin-film array

Objective. Dorsal root ganglia (DRG) are promising sites for recording sensory activity. Current technologies for DRG recording are stiff and typically do not have sufficient site density for high-fidelity neural data techniques.Approach. In acute experiments, we demonstrate single-unit neural recordings in sacral DRG of anesthetized felines using a 4.5µm thick, high-density flexible polyimide microelectrode array with 60 sites and 30-40µm site spacing. We delivered arrays into DRG with ultrananocrystalline diamond shuttles designed for high stiffness affording a smaller footprint. We recorded neural activity during sensory activation, including cutaneous brushing and bladder filling, as well as during electrical stimulation of the pudendal nerve and anal sphincter. We used specialized neural signal analysis software to sort densely packed neural signals.Main results. We successfully delivered arrays in five of six experiments and recorded single-unit sensory activity in four experiments. The median neural signal amplitude was 55μV peak-to-peak and the maximum unique units recorded at one array position was 260, with 157 driven by sensory or electrical stimulation. In one experiment, we used the neural analysis software to track eight sorted single units as the array was retracted ∼500μm.Significance. This study is the first demonstration of ultrathin, flexible, high-density electronics delivered into DRG, with capabilities for recording and tracking sensory information that are a significant improvement over conventional DRG interfaces.

Decoding hindlimb kinematics from descending and ascending neural signals during cat locomotion

OBJECTIVE

The main objective of this research is to record both sensory and motor information from the ascending and descending tracts within the spinal cord for decoding the hindlimb kinematics during walking on the treadmill.

APPROACH

Two different experimental paradigms (i.e., active and passive) were used in the current study. During active experiments, five cats were trained to walk bipedally while their hands kept on the front frame of the treadmill for balance or to walk quadrupedally. During passive experiments, the limb was passively moved by the experimenter. Local field potential (LFP) activity was recorded using a microwire array implanted in the dorsal column (DC) and lateral column (LC) of the L3-L4 spinal segments. The amplitude and frequency components of the LFP formed the feature set and the elastic net regularization was used to decode the hindlimb joint angles.

MAIN RESULTS

The results show that there is no significant difference between the information content of the signals recorded from the DC and LC regions during walking on the treadmill, but the information content of the DC is significantly higher than that of the LC during passively applied movement of the hindlimb in the anesthetized cats. Moreover, the decoding performance obtained using the recorded signals from the DC is comparable with that from the LC during locomotion. But, the decoding performance obtained using the recording channels in the DC is significantly better than that obtained using the signals recorded from the LC. The long-term analysis shows that robust decoding performance can be achieved over 2-3 months without a significant decrease in performance.

SIGNIFICANCE

This work presents a promising approach to developing a natural and robust motor neuroprosthesis device using descending neural signals to execute the movement and ascending neural signals as the feedback information for control of the movement.

Estimation of Bladder Pressure and Volume from the Neural Activity of Lumbosacral Dorsal Horn Using a Long-Short-Term-Memory-based Deep Neural Network

In this paper, we propose a deep recurrent neural network (DRNN) for the estimation of bladder pressure and volume from neural activity recorded directly from spinal cord gray matter neurons. The model was based on the Long Short-Term Memory (LSTM) architecture, which has emerged as a general and effective model for capturing long-term temporal dependencies with good generalization performance. In this way, training the network with the data recorded from one rat could lead to estimating the bladder status of different rats. We combined modeling of spiking and local field potential (LFP) activity into a unified framework to estimate the pressure and volume of the bladder. Moreover, we investigated the effect of two-electrode recording on decoding performance. The results show that the two-electrode recordings significantly improve the decoding performance compared to single-electrode recordings. The proposed framework could estimate bladder pressure and volume with an average normalized root-mean-squared (NRMS) error of 14.9 ± 4.8% and 19.7 ± 4.7% and a correlation coefficient (CC) of 83.2 ± 3.2% and 74.2 ± 6.2%, respectively. This work represents a promising approach to the real-time estimation of bladder pressure/volume in the closed-loop control of bladder function using functional electrical stimulation.

Implantable Neural Interfaces and Wearable Tactile Systems for Bidirectional Neuroprosthetics Systems

Neuroprosthetics and neuromodulation represent a promising field for several related applications in the central and peripheral nervous system, such as the treatment of neurological disorders, the control of external robotic devices, and the restoration of lost tactile functions. These actions are allowed by the neural interface, a miniaturized implantable device that most commonly exploits electrical energy to fulfill these operations. A neural interface must be biocompatible, stable over time, low invasive, and highly selective; the challenge is to develop a safe, compact, and reliable tool for clinical applications. In case of anatomical impairments, neuroprosthetics is bound to the need of exploring the surrounding environment by fast-responsive and highly sensitive artificial tactile sensors that mimic the natural sense of touch. Tactile sensors and neural interfaces are closely interconnected since the readouts from the first are required to convey information to the neural implantable apparatus. The role of these devices is pivotal hence technical improvements are essential to ensure a secure system to be eventually adopted in daily life. This review highlights the fundamental criteria for the design and microfabrication of neural interfaces and artificial tactile sensors, their use in clinical applications, and future enhancements for the release of a second generation of devices.

Real-Time Bladder Pressure Estimation for Closed-Loop Control in a Detrusor Overactivity Model

Overactive bladder (OAB) patients suffer from a frequent urge to urinate, which can lead to a poor quality of life. Current neurostimulation therapy uses open-loop electrical stimulation to alleviate symptoms. Continuous stimulation facilitates habituation of neural pathways and consumes battery power. Sensory feedback-based closed-loop stimulation may offer greater clinical benefit by driving bladder relaxation only when bladder contractions are detected, leading to increased bladder capacity. Effective delivery of such sensory feedback, particularly in real-time, is necessary to accomplish this goal. We implemented a Kalman filter-based model to estimate bladder pressure in real-time using unsorted neural recordings from sacral-level dorsal root ganglia, achieving a 0.88 ± 0.16 correlation coefficient fit across 35 normal and simulated OAB bladder fills in five experiments. We also demonstrated closed-loop neuromodulation using the estimated pressure to trigger pudendal nerve stimulation, which increased bladder capacity by 40% in two trials. An offline analysis indicated that unsorted neural signals had a similar stability over time as compared to sorted single units, which would require a higher computational load. We believe this paper demonstrates the utility of decoding bladder pressure from neural activity for closed-loop control; however, real-time validation during behavioral studies is necessary prior to clinical translation.

A probabilistic recurrent neural network for decoding hind limb kinematics from multi-segment recordings of the dorsal horn neurons

OBJECTIVE

Providing accurate and robust estimates of limb kinematics from recorded neural activities is prominent in closed-loop control of functional electrical stimulation (FES). A major issue in providing accurate decoding the limb kinematics is the decoding model. The primary goal of this study is to develop a decoding approach to model the dynamic interactions of neural systems for accurate decoding. Another critical issue is to find reliable recording sites. Up to now, neural recordings from spinal neural activities were investigated. In this paper, the neural recordings from different vertebrae in decoding limb kinematics are investigated.

APPROACH

In the current study, a new generative probabilistic model with explicit considering the joint density is developed. Then, an adaptive discriminative learning algorithm is proposed for learning the model. It will be shown that the proposed generative process can be implemented by a recurrent neural network (RNN) with specific structure. We record the neural activities from dorsal horn neurons by using three electrodes placed in the L4, L5, and L6 vertebrae in anesthetized cats.

MAIN RESULTS

Information theoretic analysis on single-joint movement and multi-segment recordings implies the rostrocaudal distribution of kinematic information. It is demonstrated that during hip movement, best decoding performance is achieved by L4 recordings. For knee and ankle movements, best decodings are achieved by L5, and L6 recordings respectively. It is also shown that the decoding accuracy using multi-segment recordings outperforms decoding accuracy obtained by single-segment recording in multi-joint movement. The results also confirm the superiority of the proposed probabilistic recurrent neural network (PRNN) over the conventional recurrent neural network and Kalman filter ([Formula: see text]).

SIGNIFICANCE

Multi-segment recordings from dorsal horn neurons as well as the proposed probabilistic recurrent network model provide a promising approach for robust and accurate decoding limb kinematics.

Proprioceptive Recognition with Artificial Neural Networks Based on Organizations of Spinocerebellar Tract and Cerebellum

Muscle kinematics and kinetics are nonlinearly encoded by proprioceptors, and the changes in muscle length and velocity are integrated into Ia afferent. Besides, proprioceptive signals from multiple muscles are probably mixed in afferent pathways, which all lead to difficulties in proprioceptive recognition for the cerebellum. In this study, the artificial neural networks, whose organizations are biologically based on the spinocerebellar tract and cerebellum, are utilized to decode the proprioceptive signals. Consistent with the controversy of the proprioceptive division in the dorsal spinocerebellar tract, the spinocerebellar tract networks incorporated two distinct inferences, (1) the centralized networks, which mixed Ia, II, and Ib and processed them together; (2) the decentralized networks, which processed Ia, II, and Ib afferents separately. The cerebellar networks were based on the Marr-Albus model to recognize the kinematic states. The networks were trained by a specific movement, and the trained networks were subsequently required to predict kinematic states of six movements. The results demonstrated that the centralized networks, which were more consistent with the physiological findings in recent years, had better recognition accuracy than the decentralized networks, and the networks were still effective even when proprioceptive afferents from multiple muscles were integrated.

Linear feature projection-based real-time decoding of limb state from dorsal root ganglion recordings

Proprioceptive afferent activities recorded by a multichannel microelectrode have been used to decode limb movements to provide sensory feedback signals for closed-loop control in a functional electrical stimulation (FES) system. However, analyzing the high dimensionality of neural activity is one of the major challenges in real-time applications. This paper proposes a linear feature projection method for the real-time decoding of ankle and knee joint angles. Single-unit activity was extracted as a feature vector from proprioceptive afferent signals that were recorded from the L7 dorsal root ganglion during passive movements of ankle and knee joints. The dimensionality of this feature vector was then reduced using a linear feature projection composed of projection pursuit and negentropy maximization (PP/NEM). Finally, a time-delayed Kalman filter was used to estimate the ankle and knee joint angles. The PP/NEM approach had a better decoding performance than did other feature projection methods, and all processes were completed within the real-time constraints. These results suggested that the proposed method could be a useful decoding method to provide real-time feedback signals in closed-loop FES systems.

Linear Feature Projection-Based Sensory Event Detection from the Multiunit Activity of Dorsal Root Ganglion Recordings

Afferent signals recorded from the dorsal root ganglion can be used to extract sensory information to provide feedback signals in a functional electrical stimulation (FES) system. The goal of this study was to propose an efficient feature projection method for detecting sensory events from multiunit activity-based feature vectors of tactile afferent activity. Tactile afferent signals were recorded from the L4 dorsal root ganglion using a multichannel microelectrode for three types of sensory events generated by mechanical stimulation on the rat hind paw. The multiunit spikes (MUSs) were extracted as multiunit activity-based feature vectors and projected using a linear feature projection method which consisted of projection pursuit and negentropy maximization (PP/NEM). Finally, a multilayer perceptron classifier was used to detect sensory events. The proposed method showed a detection accuracy superior to those of other linear and nonlinear feature projection methods and all processes were completed within real-time constraints. Results suggest that the proposed method could be useful to detect sensory events in real time. We have demonstrated the methodology for an efficient feature projection method to detect real-time sensory events from the multiunit activity of dorsal root ganglion recordings. The proposed method could be applied to provide real-time sensory feedback signals in closed-loop FES systems.

Distributed force feedback in the spinal cord and the regulation of limb mechanics

This review is an update on the role of force feedback from Golgi tendon organs in the regulation of limb mechanics during voluntary movement. Current ideas about the role of force feedback are based on modular circuits linking idealized systems of agonists, synergists, and antagonistic muscles. In contrast, force feedback is widely distributed across the muscles of a limb and cannot be understood based on these circuit motifs. Similarly, muscle architecture cannot be understood in terms of idealized systems, since muscles cross multiple joints and axes of rotation and further influence remote joints through inertial coupling. It is hypothesized that distributed force feedback better represents the complex mechanical interactions of muscles, including the stresses in the musculoskeletal network born by muscle articulations, myofascial force transmission, and inertial coupling. Together with the strains of muscle fascicles measured by length feedback from muscle spindle receptors, this integrated proprioceptive feedback represents the mechanical state of the musculoskeletal system. Within the spinal cord, force feedback has excitatory and inhibitory components that coexist in various combinations based on motor task and integrated with length feedback at the premotoneuronal and motoneuronal levels. It is concluded that, in agreement with other investigators, autogenic, excitatory force feedback contributes to propulsion and weight support. It is further concluded that coexistent inhibitory force feedback, together with length feedback, functions to manage interjoint coordination and the mechanical properties of the limb in the face of destabilizing inertial forces and positive force feedback, as required by the accelerations and changing directions of both predator and prey.

Decoding hind limb kinematics from neuronal activity of the dorsal horn neurons using multiple level learning algorithm

Decoding continuous hind limb joint angles from sensory recordings of neural system provides a feedback for closed-loop control of hind limb movement using functional electrical stimulation. So far, many attempts have been done to extract sensory information from dorsal root ganglia and sensory nerves. In this work, we examine decoding joint angles trajectories from the single-electrode extracellular recording of dorsal horn gray matter of the spinal cord during passive limb movement in anesthetized cats. In this study, a processing framework based on ensemble learning approach is propose to combine firing rate (FR) and interspike interval (ISI) information of the neuronal activity. For this purpose, a stacked generalization approach based on recurrent neural network is proposed to enhance decoding accuracy of the movement kinematics. The results show that the high precision neural decoding of limb movement can be achieved even with a single electrode implanted in the spinal cord gray matter.

Neurophysiology and neural engineering: a review

Neurophysiology is the branch of physiology concerned with understanding the function of neural systems. Neural engineering (also known as neuroengineering) is a discipline within biomedical engineering that uses engineering techniques to understand, repair, replace, enhance, or otherwise exploit the properties and functions of neural systems. In most cases neural engineering involves the development of an interface between electronic devices and living neural tissue. This review describes the origins of neural engineering, the explosive development of methods and devices commencing in the late 1950s, and the present-day devices that have resulted. The barriers to interfacing electronic devices with living neural tissues are many and varied, and consequently there have been numerous stops and starts along the way. Representative examples are discussed. None of this could have happened without a basic understanding of the relevant neurophysiology. I also consider examples of how neural engineering is repaying the debt to basic neurophysiology with new knowledge and insight.

Multiunit Activity-Based Real-Time Limb-State Estimation from Dorsal Root Ganglion Recordings

Proprioceptive afferent activities could be useful for providing sensory feedback signals for closed-loop control during functional electrical stimulation (FES). However, most previous studies have used the single-unit activity of individual neurons to extract sensory information from proprioceptive afferents. This study proposes a new decoding method to estimate ankle and knee joint angles using multiunit activity data. Proprioceptive afferent signals were recorded from a dorsal root ganglion with a single-shank microelectrode during passive movements of the ankle and knee joints, and joint angles were measured as kinematic data. The mean absolute value (MAV) was extracted from the multiunit activity data, and a dynamically driven recurrent neural network (DDRNN) was used to estimate ankle and knee joint angles. The multiunit activity-based MAV feature was sufficiently informative to estimate limb states, and the DDRNN showed a better decoding performance than conventional linear estimators. In addition, processing time delay satisfied real-time constraints. These results demonstrated that the proposed method could be applicable for providing real-time sensory feedback signals in closed-loop FES systems.

Personalized neuroprosthetics

Decades of technological developments have populated the field of neuroprosthetics with myriad replacement strategies, neuromodulation therapies, and rehabilitation procedures to improve the quality of life for individuals with neuromotor disorders. Despite the few but impressive clinical successes, and multiple breakthroughs in animal models, neuroprosthetic technologies remain mainly confined to sophisticated laboratory environments. We summarize the core principles and latest achievements in neuroprosthetics, but also address the challenges that lie along the path toward clinical fruition. We propose a pragmatic framework to personalize neurotechnologies and rehabilitation for patient-specific impairments to achieve the timely dissemination of neuroprosthetic medicine.

Sensory systems in the control of movement

Animal movement is immensely varied, from the simplest reflexive responses to the most complex, dexterous voluntary tasks. Here, we focus on the control of movement in mammals, including humans. First, the sensory inputs most closely implicated in controlling movement are reviewed, with a focus on somatosensory receptors. The response properties of the large muscle receptors are examined in detail. The role of sensory input in the control of movement is then discussed, with an emphasis on the control of locomotion. The interaction between central pattern generators and sensory input, in particular in relation to stretch reflexes, timing, and pattern forming neuronal networks is examined. It is proposed that neural signals related to bodily velocity form the basic descending command that controls locomotion through specific and well-characterized relationships between muscle activation, step cycle phase durations, and biomechanical outcomes. Sensory input is crucial in modulating both the timing and pattern forming parts of this mechanism.

Estimation of bladder volume from afferent neural activity

Refractive urinary dysfunction in individuals suffering from neurogenic bladder syndrome can be treated with implanted neurostimulators that restore, to some degree, the control of the urinary bladder. A sensor capable of relaying feedback from bladder activity to the implanted neurostimulator is required to implement a closed-loop system to improve overall implant efficacy and minimize deleterious effects to neural tissue caused by continuous electrical stimulation. In this paper, we present a method that allows real-time estimation of bladder volume from the primary afferent activity of bladder mechanoreceptors. Our method was validated with data acquired from anesthetized rats in acute experiments. It was possible to qualitatively estimate three states of bladder fullness in 100% of trials when the recorded afferent activity exhibited a Spearman's correlation coefficient of 0.6 or better. Furthermore, we could quantitatively estimate bladder volume, and also its pressure, using timeframes of properly chosen duration. The mean volume estimation error was 5.8 ±3.1%. Our results also demonstrate that it is possible to quantify both phasic and tonic bladder responses during slow filling and isovolumetric measurements, respectively.

Real-time control of hind limb functional electrical stimulation using feedback from dorsal root ganglia recordings

OBJECTIVE

Functional electrical stimulation (FES) approaches often utilize an open-loop controller to drive state transitions. The addition of sensory feedback may allow for closed-loop control that can respond effectively to perturbations and muscle fatigue.

APPROACH

We evaluated the use of natural sensory nerve signals obtained with penetrating microelectrode arrays in lumbar dorsal root ganglia (DRG) as real-time feedback for closed-loop control of FES-generated hind limb stepping in anesthetized cats.

MAIN RESULTS

Leg position feedback was obtained in near real-time at 50 ms intervals by decoding the firing rates of more than 120 DRG neurons recorded simultaneously. Over 5 m of effective linear distance was traversed during closed-loop stepping trials in each of two cats. The controller compensated effectively for perturbations in the stepping path when DRG sensory feedback was provided. The presence of stimulation artifacts and the quality of DRG unit sorting did not significantly affect the accuracy of leg position feedback obtained from the linear decoding model as long as at least 20 DRG units were included in the model.

SIGNIFICANCE

This work demonstrates the feasibility and utility of closed-loop FES control based on natural neural sensors. Further work is needed to improve the controller and electrode technologies and to evaluate long-term viability.

Online feedback control of functional electrical stimulation using dorsal root ganglia recordings

In neuroprostheses that use functional electrical stimulation (FES) to restore motor function, closed-loop feedback control may compensate for muscle fatigue, perturbations and nonlinearities in the behavior of the effected muscles. Kinematic state information is naturally represented in the firing rates of primary afferent neurons, which may be recorded with multi-electrode arrays at the level of the dorsal root ganglia (DRG). Previous work in cats has shown that it is feasible to estimate the kinematic state of the hind limb with a multivariate linear regression model of the neural activity in the DRG. In this study we extend these results to estimate the limb state in real-time during intramuscular stimulation in an anesthetized cat. Furthermore, we used the limb state estimates as feedback to a finite state FES controller to generate rudimentary walking behavior. This work demonstrates the feasibility of using DRG activity in a closed-loop FES system.

Adaptive inverse control of neural spatiotemporal spike patterns with a reproducing kernel Hilbert space (RKHS) framework

The precise control of spiking in a population of neurons via applied electrical stimulation is a challenge due to the sparseness of spiking responses and neural system plasticity. We pose neural stimulation as a system control problem where the system input is a multidimensional time-varying signal representing the stimulation, and the output is a set of spike trains; the goal is to drive the output such that the elicited population spiking activity is as close as possible to some desired activity, where closeness is defined by a cost function. If the neural system can be described by a time-invariant (homogeneous) model, then offline procedures can be used to derive the control procedure; however, for arbitrary neural systems this is not tractable. Furthermore, standard control methodologies are not suited to directly operate on spike trains that represent both the target and elicited system response. In this paper, we propose a multiple-input multiple-output (MIMO) adaptive inverse control scheme that operates on spike trains in a reproducing kernel Hilbert space (RKHS). The control scheme uses an inverse controller to approximate the inverse of the neural circuit. The proposed control system takes advantage of the precise timing of the neural events by using a Schoenberg kernel defined directly in the space of spike trains. The Schoenberg kernel maps the spike train to an RKHS and allows linear algorithm to control the nonlinear neural system without the danger of converging to local minima. During operation, the adaptation of the controller minimizes a difference defined in the spike train RKHS between the system and the target response and keeps the inverse controller close to the inverse of the current neural circuit, which enables adapting to neural perturbations. The results on a realistic synthetic neural circuit show that the inverse controller based on the Schoenberg kernel outperforms the decoding accuracy of other models based on the conventional rate representation of neural signal (i.e., spikernel and generalized linear model). Moreover, after a significant perturbation of the neuron circuit, the control scheme can successfully drive the elicited responses close to the original target responses.

Nonlinear modeling of dynamic interactions within neuronal ensembles using Principal Dynamic Modes

A methodology for nonlinear modeling of multi-input multi-output (MIMO) neuronal systems is presented that utilizes the concept of Principal Dynamic Modes (PDM). The efficacy of this new methodology is demonstrated in the study of the dynamic interactions between neuronal ensembles in the Pre-Frontal Cortex (PFC) of a behaving non-human primate (NHP) performing a Delayed Match-to-Sample task. Recorded spike trains from Layer-2 and Layer-5 neurons were viewed as the "inputs" and "outputs", respectively, of a putative MIMO system/model that quantifies the dynamic transformation of multi-unit neuronal activity between Layer-2 and Layer-5 of the PFC. Model prediction performance was evaluated by means of computed Receiver Operating Characteristic (ROC) curves. The PDM-based approach seeks to reduce the complexity of MIMO models of neuronal ensembles in order to enable the practicable modeling of large-scale neural systems incorporating hundreds or thousands of neurons, which is emerging as a preeminent issue in the study of neural function. The "scaling-up" issue has attained critical importance as multi-electrode recordings are increasingly used to probe neural systems and advance our understanding of integrated neural function. The initial results indicate that the PDM-based modeling methodology may greatly reduce the complexity of the MIMO model without significant degradation of performance. Furthermore, the PDM-based approach offers the prospect of improved biological/physiological interpretation of the obtained MIMO models.

Closing the loop for memory prosthesis: detecting the role of hippocampal neural ensembles using nonlinear models

A major factor involved in providing closed loop feedback for control of neural function is to understand how neural ensembles encode online information critical to the final behavioral endpoint. This issue was directly assessed in rats performing a short-term delay memory task in which successful encoding of task information is dependent upon specific spatio-temporal firing patterns recorded from ensembles of CA3 and CA1 hippocampal neurons. Such patterns, extracted by a specially designed nonlinear multi-input multi-output (MIMO) nonlinear mathematical model, were used to predict successful performance online via a closed loop paradigm which regulated trial difficulty (time of retention) as a function of the "strength" of stimulus encoding. The significance of the MIMO model as a neural prosthesis has been demonstrated by substituting trains of electrical stimulation pulses to mimic these same ensemble firing patterns. This feature was used repeatedly to vary "normal" encoding as a means of understanding how neural ensembles can be "tuned" to mimic the inherent process of selecting codes of different strength and functional specificity. The capacity to enhance and tune hippocampal encoding via MIMO model detection and insertion of critical ensemble firing patterns shown here provides the basis for possible extension to other disrupted brain circuitry.