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Checa M, Millan-Solsona R, Mares AG, Pujals S, Gomila G. Fast Label-Free Nanoscale Composition Mapping of Eukaryotic Cells Via Scanning Dielectric Force Volume Microscopy and Machine Learning. SMALL METHODS 2021; 5:e2100279. [PMID: 34928004 DOI: 10.1002/smtd.202100279] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 04/28/2021] [Indexed: 06/14/2023]
Abstract
Mapping the biochemical composition of eukaryotic cells without the use of exogenous labels is a long-sought objective in cell biology. Recently, it has been shown that composition maps on dry single bacterial cells with nanoscale spatial resolution can be inferred from quantitative nanoscale dielectric constant maps obtained with the scanning dielectric microscope. Here, it is shown that this approach can also be applied to the much more challenging case of fixed and dry eukaryotic cells, which are highly heterogeneous and show micrometric topographic variations. More importantly, it is demonstrated that the main bottleneck of the technique (the long computation times required to extract the nanoscale dielectric constant maps) can be shortcut by using supervised neural networks, decreasing them from weeks to seconds in a wokstation computer. This easy-to-use data-driven approach opens the door for in situ and on-the-fly label free nanoscale composition mapping of eukaryotic cells with scanning dielectric microscopy.
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Affiliation(s)
- Martí Checa
- Nanoscale Bioelectrical Characterization Group, Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 11-15, Barcelona, 08028, Spain
| | - Ruben Millan-Solsona
- Nanoscale Bioelectrical Characterization Group, Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 11-15, Barcelona, 08028, Spain
- Departament d'Enginyeria Electrònica i Biomèdica, Universitat de Barcelona, Carrer Martí i Franquès 1, Barcelona, 08028, Spain
| | - Adrianna Glinkowska Mares
- Nanoscopy for Nanomedicine Group, Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 11-15, Barcelona, 08028, Spain
| | - Silvia Pujals
- Departament d'Enginyeria Electrònica i Biomèdica, Universitat de Barcelona, Carrer Martí i Franquès 1, Barcelona, 08028, Spain
- Nanoscopy for Nanomedicine Group, Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 11-15, Barcelona, 08028, Spain
| | - Gabriel Gomila
- Nanoscale Bioelectrical Characterization Group, Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 11-15, Barcelona, 08028, Spain
- Departament d'Enginyeria Electrònica i Biomèdica, Universitat de Barcelona, Carrer Martí i Franquès 1, Barcelona, 08028, Spain
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Checa M, Millan-Solsona R, Glinkowska Mares A, Pujals S, Gomila G. Dielectric Imaging of Fixed HeLa Cells by In-Liquid Scanning Dielectric Force Volume Microscopy. NANOMATERIALS (BASEL, SWITZERLAND) 2021; 11:1402. [PMID: 34070690 PMCID: PMC8226567 DOI: 10.3390/nano11061402] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 05/21/2021] [Accepted: 05/23/2021] [Indexed: 01/16/2023]
Abstract
Mapping the dielectric properties of cells with nanoscale spatial resolution can be an important tool in nanomedicine and nanotoxicity analysis, which can complement structural and mechanical nanoscale measurements. Recently we have shown that dielectric constant maps can be obtained on dried fixed cells in air environment by means of scanning dielectric force volume microscopy. Here, we demonstrate that such measurements can also be performed in the much more challenging case of fixed cells in liquid environment. Performing the measurements in liquid media contributes to preserve better the structure of the fixed cells, while also enabling accessing the local dielectric properties under fully hydrated conditions. The results shown in this work pave the way to address the nanoscale dielectric imaging of living cells, for which still further developments are required, as discussed here.
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Affiliation(s)
- Martí Checa
- Nanoscale Bioelectric Characterization, Institut de Bioenginyeria de Catalunya (IBEC), The Barcelona Institute of Science and Technology (BIST), c/Baldiri I Reixac 11-15, 08028 Barcelona, Spain;
| | - Ruben Millan-Solsona
- Nanoscale Bioelectric Characterization, Institut de Bioenginyeria de Catalunya (IBEC), The Barcelona Institute of Science and Technology (BIST), c/Baldiri I Reixac 11-15, 08028 Barcelona, Spain;
- Departament d’Enginyeria Electrònica i Biomèdica, Universitat de Barcelona, c/Martí i Franquès 1, 08028 Barcelona, Spain;
| | - Adrianna Glinkowska Mares
- Nanoscopy for Nanomedicine, Institut de Bioenginyeria de Catalunya (IBEC), The Barcelona Institute of Science and Technology (BIST), c/Baldiri I Reixac 11-15, 08028 Barcelona, Spain;
| | - Silvia Pujals
- Departament d’Enginyeria Electrònica i Biomèdica, Universitat de Barcelona, c/Martí i Franquès 1, 08028 Barcelona, Spain;
- Nanoscopy for Nanomedicine, Institut de Bioenginyeria de Catalunya (IBEC), The Barcelona Institute of Science and Technology (BIST), c/Baldiri I Reixac 11-15, 08028 Barcelona, Spain;
| | - Gabriel Gomila
- Nanoscale Bioelectric Characterization, Institut de Bioenginyeria de Catalunya (IBEC), The Barcelona Institute of Science and Technology (BIST), c/Baldiri I Reixac 11-15, 08028 Barcelona, Spain;
- Departament d’Enginyeria Electrònica i Biomèdica, Universitat de Barcelona, c/Martí i Franquès 1, 08028 Barcelona, Spain;
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Checa M, Millan-Solsona R, Blanco N, Torrents E, Fabregas R, Gomila G. Mapping the dielectric constant of a single bacterial cell at the nanoscale with scanning dielectric force volume microscopy. NANOSCALE 2019; 11:20809-20819. [PMID: 31657419 DOI: 10.1039/c9nr07659j] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Mapping the dielectric constant at the nanoscale of samples showing a complex topography, such as non-planar nanocomposite materials or single cells, poses formidable challenges to existing nanoscale dielectric microscopy techniques. Here we overcome these limitations by introducing Scanning Dielectric Force Volume Microscopy. This scanning probe microscopy technique is based on the acquisition of electrostatic force approach curves at every point of a sample and its post-processing and quantification by using a computational model that incorporates the actual measured sample topography. The technique provides quantitative nanoscale images of the local dielectric constant of the sample with unparalleled accuracy, spatial resolution and statistical significance, irrespectively of the complexity of its topography. We illustrate the potential of the technique by presenting a nanoscale dielectric constant map of a single bacterial cell, including its small-scale appendages. The bacterial cell shows three characteristic equivalent dielectric constant values, namely, εr,bac1 = 2.6 ± 0.2, εr,bac2 = 3.6 ± 0.4 and εr,bac3 = 4.9 ± 0.5, which enable identifying different dielectric properties of the cell wall and of the cytoplasmatic region, as well as, the existence of variations in the dielectric constant along the bacterial cell wall itself. Scanning Dielectric Force Volume Microscopy is expected to have an important impact in Materials and Life Sciences where the mapping of the dielectric properties of samples showing complex nanoscale topographies is often needed.
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Affiliation(s)
- Martí Checa
- Nanoscale Bioelectrical Characterization, Institut de Bioenginyeria de Catalunya (IBEC), The Barcelona Institute of Science and Technology, c/Baldiri i Reixac 11-15, 08028, Barcelona, Spain. and Departament d'Enginyeria Electrònica i Biomèdica, Universitat de Barcelona, c/Martí i Franquès 1, 08028, Barcelona, Spain
| | - Ruben Millan-Solsona
- Nanoscale Bioelectrical Characterization, Institut de Bioenginyeria de Catalunya (IBEC), The Barcelona Institute of Science and Technology, c/Baldiri i Reixac 11-15, 08028, Barcelona, Spain. and Departament d'Enginyeria Electrònica i Biomèdica, Universitat de Barcelona, c/Martí i Franquès 1, 08028, Barcelona, Spain
| | - Nuria Blanco
- Bacterial Infections: Antimicrobial Therapies, Institut de Bioenginyeria de Catalunya (IBEC), The Barcelona Institute of Science and Technology, c/Baldiri i Reixac 11-15, 08028, Barcelona
| | - Eduard Torrents
- Bacterial Infections: Antimicrobial Therapies, Institut de Bioenginyeria de Catalunya (IBEC), The Barcelona Institute of Science and Technology, c/Baldiri i Reixac 11-15, 08028, Barcelona
| | - Rene Fabregas
- Departament d'Enginyeria Electrònica i Biomèdica, Universitat de Barcelona, c/Martí i Franquès 1, 08028, Barcelona, Spain
| | - Gabriel Gomila
- Nanoscale Bioelectrical Characterization, Institut de Bioenginyeria de Catalunya (IBEC), The Barcelona Institute of Science and Technology, c/Baldiri i Reixac 11-15, 08028, Barcelona, Spain. and Departament d'Enginyeria Electrònica i Biomèdica, Universitat de Barcelona, c/Martí i Franquès 1, 08028, Barcelona, Spain
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