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Biofinder detects biological remains in Green River fish fossils from Eocene epoch at video speed. Sci Rep 2022; 12:10164. [PMID: 35715549 PMCID: PMC9205911 DOI: 10.1038/s41598-022-14410-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 06/07/2022] [Indexed: 11/23/2022] Open
Abstract
The “Search for life”, which may be extinct or extant on other planetary bodies is one of the major goals of NASA planetary exploration missions. Finding such evidence of biological residue in a vast planetary landscape is an enormous challenge. We have developed a highly sensitive instrument, the “Compact Color Biofinder”, which can locate minute amounts of biological material in a large area at video speed from a standoff distance. Here we demonstrate the efficacy of the Biofinder to detect fossils that still possess strong bio-fluorescence signals from a collection of samples. Fluorescence images taken by the Biofinder instrument show that all Knightia spp. fish fossils analysed from the Green River formation (Eocene, 56.0–33.9 Mya) still contain considerable amounts of biological residues. The biofluorescence images support the fact that organic matter has been well preserved in the Green River formation, and thus, not diagenetically replaced (replaced by minerals) over such a significant timescale. We further corroborated results from the Biofinder fluorescence imagery through Raman and attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopies, scanning electron microscopy, energy dispersive X-ray spectroscopy (SEM–EDS), and fluorescence lifetime imaging microscopy (FLIM). Our findings confirm once more that biological residues can survive millions of years, and that using biofluorescence imaging effectively detects these trace residues in real time. We anticipate that fluorescence imaging will be critical in future NASA missions to detect organics and the existence of life on other planetary bodies.
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2
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Lymer EA, Konstantinidis M, Lalla EA, Daly MG, Tait KT. UV Time-Resolved Laser-Induced Fluorescence Spectroscopy of Amino Acids Found in Meteorites: Implications for Space Science and Exploration. ASTROBIOLOGY 2021; 21:1350-1362. [PMID: 34314603 DOI: 10.1089/ast.2021.0006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Laser-induced fluorescence spectroscopy is a useful laboratory and in situ technique for planetary exploration, with applications in biosignature detection and the search for life on Mars. However, little work has been completed on the utility of fluorescence spectroscopy techniques on asteroid relevant material. In preparation for asteroid sample return missions such as NASA's OSIRIS-REx and JAXA's Hayabusa2, we conducted UV time resolved laser-induced fluorescence spectroscopy (TR-LIF) analysis of 10 amino acids, all of which have been found in the carbonaceous meteorites Murchison and Allende. We present the calculation of decay rates of each amino acid (1.55-3.56 ns) and compare with those of relevant homogeneous minerals (15-70 ns). Moreover, we demonstrate a linear relationship between calculated lifetimes and elemental abundance of nitrogen and carbon (p < 0.025). The quantitative and qualitative fluorescence analyses presented in this work will lead to more reliable identification of organic material within meteorites and asteroids in a time-efficient, minimally destructive way.
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Affiliation(s)
- Elizabeth A Lymer
- Centre for Research in Earth and Space Science, York University, Toronto, Canada
| | - Menelaos Konstantinidis
- Centre for Research in Earth and Space Science, York University, Toronto, Canada
- Dalla Lana School of Public Health, University of Toronto, Toronto, Canada
| | - Emmanuel A Lalla
- Centre for Research in Earth and Space Science, York University, Toronto, Canada
| | - Michael G Daly
- Centre for Research in Earth and Space Science, York University, Toronto, Canada
| | - Kimberly T Tait
- Department of Natural History, Centre for Applied Planetary Mineralogy, Royal Ontario Museum, Toronto, Canada
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Misra AK, Acosta-Maeda TE, Zhou J, Egan MJ, Dasilveira L, Porter JN, Rowley SJ, Zachary Trimble A, Boll P, Sandford MW, McKay CP, Nurul Abedin M. Compact Color Biofinder (CoCoBi): Fast, Standoff, Sensitive Detection of Biomolecules and Polyaromatic Hydrocarbons for the Detection of Life. APPLIED SPECTROSCOPY 2021; 75:1427-1436. [PMID: 34309445 DOI: 10.1177/00037028211033911] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
We have developed a compact instrument called the "COmpact COlor BIofinder", or CoCoBi, for the standoff detection of biological materials and organics with polyaromatic hydrocarbons (PAHs) using a nondestructive approach in a wide area. The CoCoBi system uses a compact solid state, conductively cooled neodymium-doped yttrium aluminum garnet (Nd:YAG) nanosecond pulsed laser capable of simultaneously providing two excitation wavelengths, 355 and 532 nm, and a compact, sensitive-gated color complementary metal-oxide-semiconductor camera detector. The system is compact, portable, and determines the location of biological materials and organics with PAHs in an area 1590 cm2 wide, from a target distance of 3 m through live video using fast fluorescence signals. The CoCoBi system is highly sensitive and capable of detecting a PAH concentration below 1 part per billion from a distance of 1 m. The color images provide the simultaneous detection of various objects in the target area using shades of color and morphological features. We demonstrate that this unique feature successfully detected the biological remains present in a 150-million-year-old fossil buried in a fluorescent clay matrix. The CoCoBi was also successfully field-tested in Hawaiian ocean water during daylight hours for the detection of natural biological materials present in the ocean. The wide-area and video-speed imaging capabilities of CoCoBi for biodetection may be highly useful in future NASA rover-lander life detection missions.
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Affiliation(s)
- Anupam K Misra
- Hawai'i Institute of Geophysics and Planetology, University of Hawai'i at Mānoa, Honolulu, HI, USA
| | - Tayro E Acosta-Maeda
- Hawai'i Institute of Geophysics and Planetology, University of Hawai'i at Mānoa, Honolulu, HI, USA
| | - Jie Zhou
- Department of Electrical Engineering, University of Hawai'i at Mānoa, Honolulu, HI, USA
| | - Miles J Egan
- Hawai'i Institute of Geophysics and Planetology, University of Hawai'i at Mānoa, Honolulu, HI, USA
| | - Luis Dasilveira
- Hawai'i Institute of Geophysics and Planetology, University of Hawai'i at Mānoa, Honolulu, HI, USA
| | - John N Porter
- Hawai'i Institute of Geophysics and Planetology, University of Hawai'i at Mānoa, Honolulu, HI, USA
| | - Sonia J Rowley
- Department of Earth Sciences, University of Hawai'i at Mānoa, Honolulu, HI, USA
| | - A Zachary Trimble
- Department of Mechanical Engineering, University of Hawai'i at Mānoa, Honolulu, HI, USA
| | - Patrick Boll
- Department of Mechanical Engineering, University of Hawai'i at Mānoa, Honolulu, HI, USA
| | - Macey W Sandford
- Hawai'i Institute of Geophysics and Planetology, University of Hawai'i at Mānoa, Honolulu, HI, USA
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Gasda PJ, Wiens RC, Reyes-Newell A, Ganguly K, Newell RT, Peterson C, Sandoval B, Ott L, Adikari S, Voit S, Clegg SM, Misra AK, Acosta-Maeda TE, Quinn H, Sharma SK, Dale M, Love SP, Maurice S. OrganiCam: a lightweight time-resolved laser-induced luminescence imager and Raman spectrometer for planetary organic material characterization. APPLIED OPTICS 2021; 60:3753-3763. [PMID: 33983308 DOI: 10.1364/ao.421291] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Accepted: 03/30/2021] [Indexed: 06/12/2023]
Abstract
OrganiCam is a laser-induced luminescence imager and spectrometer designed for standoff organic and biosignature detection on planetary bodies. OrganiCam uses a diffused laser beam (12° cone) to cover a large area at several meters distance and records luminescence on half of its intensified detector. The diffuser can be removed to record Raman and fluorescence spectra from a small spot from 2 m standoff distance. OrganiCam's small size and light weight makes it ideal for surveying organics on planetary surfaces. We have designed and built a brassboard version of the OrganiCam instrument and performed initial tests of the system.
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Berlanga G, Acosta-Maeda TE, Sharma SK, Porter JN, Dera P, Shelton H, Taylor GJ, Misra AK. Remote Raman spectroscopy of natural rocks. APPLIED OPTICS 2019; 58:8971-8980. [PMID: 31873679 DOI: 10.1364/ao.58.008971] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 10/16/2019] [Indexed: 06/10/2023]
Abstract
We report the remote Raman spectra of natural igneous, metamorphic, and sedimentary rock samples at a standoff distance of 5 m. High-quality remote Raman spectra of unprepared rocks are necessary for accurate and realistic analysis of future Raman measurements on planetary surfaces such as Mars. Our results display the ability of a portable compact remote Raman system (CRRS) to effectively detect and isolate various light- and dark-colored mineral phases in natural rocks. The CRRS easily detected plagioclase and potassium feldspar end members, quartz, and calcite in rocks with high fluorescence backgrounds. Intermediate feldspars and quartz, when found in rocks with complex mineralogies, exhibited band shifts and broadening in the ${504{-}510}\,\,{{\rm cm}^{ - 1}}$504-510cm-1 and ${600{-}1200}\,\,{{\rm cm}^{ - 1}}$600-1200cm-1 regions. A good approximation of intermediate plagioclase feldspars was possible by using overall Raman spectral shape and assigning other minor Raman peaks in addition to the $ 504{-}510\,\,{{\rm cm}^{ - 1}}$504-510cm-1 peaks. Detection of olivine and pyroxene in mafic rocks allowed for compositional characterization.
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Shkolyar S, Eshelman EJ, Farmer JD, Hamilton D, Daly MG, Youngbull C. Detecting Kerogen as a Biosignature Using Colocated UV Time-Gated Raman and Fluorescence Spectroscopy. ASTROBIOLOGY 2018; 18:431-453. [PMID: 29624103 DOI: 10.1089/ast.2017.1716] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The Mars 2020 mission will analyze samples in situ and identify any that could have preserved biosignatures in ancient habitable environments for later return to Earth. Highest priority targeted samples include aqueously formed sedimentary lithologies. On Earth, such lithologies can contain fossil biosignatures as aromatic carbon (kerogen). In this study, we analyzed nonextracted kerogen in a diverse suite of natural, complex samples using colocated UV excitation (266 nm) time-gated (UV-TG) Raman and laser-induced fluorescence spectroscopies. We interrogated kerogen and its host matrix in samples to (1) explore the capabilities of UV-TG Raman and fluorescence spectroscopies for detecting kerogen in high-priority targets in the search for possible biosignatures on Mars; (2) assess the effectiveness of time gating and UV laser wavelength in reducing fluorescence in Raman spectra; and (3) identify sample-specific issues that could challenge rover-based identifications of kerogen using UV-TG Raman spectroscopy. We found that ungated UV Raman spectroscopy is suited to identify diagnostic kerogen Raman bands without interfering fluorescence and that UV fluorescence spectroscopy is suited to identify kerogen. These results highlight the value of combining colocated Raman and fluorescence spectroscopies, similar to those obtainable by SHERLOC on Mars 2020, to strengthen the confidence of kerogen detection as a potential biosignature in complex natural samples. Key Words: Raman spectroscopy-Laser-induced fluorescence spectroscopy-Mars Sample Return-Mars 2020 mission-Kerogen-Biosignatures. Astrobiology 18, 431-453.
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Affiliation(s)
- Svetlana Shkolyar
- 1 School of Earth and Space Exploration, Arizona State University , Tempe, Arizona
- 2 Current address: Geophysical Laboratory, Carnegie Institution of Washington , Washington, District of Columbia
| | - Evan J Eshelman
- 3 The Centre for Research in Earth and Space Science (CRESS), York University , Toronto, Ontario, Canada
| | - Jack D Farmer
- 1 School of Earth and Space Exploration, Arizona State University , Tempe, Arizona
| | - David Hamilton
- 3 The Centre for Research in Earth and Space Science (CRESS), York University , Toronto, Ontario, Canada
| | - Michael G Daly
- 3 The Centre for Research in Earth and Space Science (CRESS), York University , Toronto, Ontario, Canada
| | - Cody Youngbull
- 4 Flathead Lake Biological Station, University of Montana , Polson, Montana
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