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Ramírez-Verdugo P, Tapia A, Forest F, Scherson RA. Evolutionary diversity of the endemic genera of the vascular flora of Chile and its implications for conservation. PLoS One 2023; 18:e0287957. [PMID: 37406022 DOI: 10.1371/journal.pone.0287957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Accepted: 06/19/2023] [Indexed: 07/07/2023] Open
Abstract
As a direct consequence of global change, both natural and human-induced, a high percentage of biodiversity is now under threat worldwide. This has urged conservation planners to formulate and/or improve existing strategies to preserve species and their ecosystems. In this context, the present study focuses on two strategies using phylogeny-based measures of biodiversity to account for the processes that led to the biodiversity patterns observed today. It will contribute additional information that can aid decision-making regarding the assignment of threat status for some species, thus strengthening measures currently in use and facilitate the allocation of often scarce conservation resources. The Evolutionarily Distinct (ED) index prioritises species that are on long branches of the tree of life with few descendants, and the Evolutionarily Distinct and Globally Endangered (EDGE) index integrates evolutionary history with IUCN Red List threat status of species. It has been used mostly in animal groups, but since the threats faced by many plants have not been evaluated, it has been more difficult to compile for plants worldwide. Here, we apply the EDGE metric to species of the endemic genera of Chile. However, more than 50% of the endemic flora of the country are still lacking official threat status. We thus used an alternative measure (Relative Evolutionary Distinctness-RED), based on a range-weighted phylogenetic tree, which uses geographic ranges to adjust branch lengths, and calculate ED. The RED index was shown to be a suitable measure, yielding similar results compared to EDGE, at least for this group of species. Given the urgency to halt biodiversity loss and the time it would take to evaluate all species, we propose that this index is used to set conservation priorities until we can calculate EDGE for these unique endemic species. This would allow guiding decision-making until we can gather more data to assess and assign conservation status to new species.
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Affiliation(s)
- Pamela Ramírez-Verdugo
- Herbario VALPL y Laboratorio de Botánica, Departamento de Ciencias y Geografía, Universidad de Playa Ancha, Valparaíso, Chile
- Jardín Botánico Nacional, Viña del Mar, Chile
- Laboratorio de Evolución y Sistemática, Departamento de Silvicultura y Conservación de la Naturaleza, Universidad de Chile, Santiago, Chile
| | - Alexis Tapia
- Departamento de Matemática, Universidad Técnica Federico Santa María, Valparaíso, Chile
| | - Félix Forest
- Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, United Kingdom
| | - Rosa A Scherson
- Laboratorio de Evolución y Sistemática, Departamento de Silvicultura y Conservación de la Naturaleza, Universidad de Chile, Santiago, Chile
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Martín-Hernanz S, Albaladejo RG, Lavergne S, Rubio E, Grall A, Aparicio A. Biogeographic history and environmental niche evolution in the palearctic genus Helianthemum (Cistaceae). Mol Phylogenet Evol 2021; 163:107238. [PMID: 34197899 DOI: 10.1016/j.ympev.2021.107238] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 05/27/2021] [Accepted: 06/24/2021] [Indexed: 11/30/2022]
Abstract
The biogeographic history and the degree of environmental niche conservatism provide essential clues to decipher the underlying macroevolutionary processes of species diversification and to understand contemporary patterns of biodiversity. The genus Helianthemum constitutes an excellent case study to investigate the impact of the geo-climatic changes and the environmental niche shifts on the origins of plant species diversity in the Mediterranean hotspot. It is a palearctic species-rich lineage with c. 140 species and subspecies mostly belonging to three distinct evolutionary radiations, almost confined to the Mediterranean region and occurring across varied environmental conditions. In this work, we studied the ample and rapid diversification of the genus Helianthemum across its whole distribution range by performing phylogenetic reconstructions of ancestral ranges and environmental niche evolution. We observed a striking synchrony of biogeographic movements with niche shifts between the three major clades of the genus Helianthemum, likely related to the geo-climatic events occurred in the Mediterranean Basin since the Upper Miocene. In particular, Late Miocene and Early Pliocene were dominated by episodes of range expansions, the Late Pliocene by range contraction and vicariance events, and Pleistocene by most intense environmental niche shifts and in-situ diversification. Our study also provides evidence for four main environmental niches in Helianthemum (i.e., Mediterranean, subdesert, humid-montane and subtropical-insular) and a tendency toward environmental niche conservatism within different subclades, with few niche shifts mostly occurring from Mediterranean ancestors. The relative longer time spent in Mediterranean areas by the ancestors of Helianthemum suggests that the larger species diversity observed in the Mediterranean (i.e. Northern Africa and Southern Europe) may have been generated by a time-for-speciation effect reinforced by environmental niche conservatism. Overall, our work highlights the role of the Mediterranean Basin as a 'cradle of diversity' and an 'evolutionary hub', facilitating the environmental transitions and determining the building up of a global plant biodiversity hotspot.
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Affiliation(s)
- Sara Martín-Hernanz
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain.
| | - Rafael G Albaladejo
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
| | - Sébastien Lavergne
- Laboratoire d'Ecologie Alpine (LECA), CNRS - Université Grenoble Alpes - Université Savoie Mont Blanc, FR-38000 Grenoble, France
| | - Encarnación Rubio
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
| | - Aurélie Grall
- Herbarium, Royal Botanic Gardens, Kew, Richmond, Surrey, United Kingdom
| | - Abelardo Aparicio
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
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Meng R, Meng Y, Yang YP, Nie ZL. Phylogeny and biogeography of Maianthemum (Asparagaceae: Nolinoideae) revisited with emphasis on its divergence pattern in SW China. PLANT DIVERSITY 2021; 43:93-101. [PMID: 33997541 PMCID: PMC8103418 DOI: 10.1016/j.pld.2021.02.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2020] [Revised: 01/21/2021] [Accepted: 02/01/2021] [Indexed: 05/30/2023]
Abstract
Maianthemum is a genus with more than 35 species from the tribe Polygonateae (Asparagaceae), widely distributed between North to Central Americas and eastern Asia with high diversity in the eastern Himalayas to the Hengduan Mountains of SW China. Although most species from SW China form a well-supported clade, phylogenetic relationships within this clade remain unclear. With a broad level of taxon sampling and an extensive character sampling from eight DNA regions, this study intends to revisit the phylogeny and biogeography of the genus to better understand the divergence patterns of species from SW China. Phylogenetic results suggested the monophyly of Maianthemum with recognition of nine strongly supported clades, but backbone relationships among these clades remained largely uncertain. For the SW China clade, individuals from the same species are grouped into different lineages. Our results revealed that the fast radiation of the SW China clade was occurred in the eastern Himalayas, followed by subsequent radiation in the Hengduan Mountains in the Pliocene. Intercontinental disjunctions of Maianthemum in the Northern Hemisphere appear to have occurred multiple times during the late Miocene to the Pliocene, likely resulted by a combination of both vicariance and long-distance dispersal events.
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Affiliation(s)
- Ran Meng
- Key Laboratory of Plant Resources Conservation and Utilization, College of Biological Resources and Environmental Sciences, Jishou University, Jishou 416000, Hunan, China
| | - Ying Meng
- Key Laboratory of Plant Resources Conservation and Utilization, College of Biological Resources and Environmental Sciences, Jishou University, Jishou 416000, Hunan, China
| | - Yong-Ping Yang
- Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla 666303, Yunnan, China
- Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China
| | - Ze-Long Nie
- Key Laboratory of Plant Resources Conservation and Utilization, College of Biological Resources and Environmental Sciences, Jishou University, Jishou 416000, Hunan, China
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Spjut R, Simon A, Guissard M, Magain N, Sérusiaux E. The fruticose genera in the Ramalinaceae (Ascomycota, Lecanoromycetes): their diversity and evolutionary history. MycoKeys 2020; 73:1-68. [PMID: 32994702 PMCID: PMC7501315 DOI: 10.3897/mycokeys.73.47287] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2019] [Accepted: 07/19/2020] [Indexed: 02/08/2023] Open
Abstract
We present phylogenetic analyses of the fruticose Ramalinaceae based on extensive collections from many parts of the world, with a special focus on the Vizcaíno deserts in north-western Mexico and the coastal desert in Namibia. We generate a four-locus DNA sequence dataset for accessions of Ramalina and two additional loci for Niebla and Vermilacinia. Four genera are strongly supported: the subcosmopolitan Ramalina, the new genus Namibialina endemic to SW Africa, and a duo formed by Niebla and Vermilacinia, endemic to the New World except the sorediate V. zebrina that disjunctly occurs in Namibia. The latter three genera are restricted to coastal desert and chaparral where vegetation depends on moisture from ocean fog. Ramalina is subcosmopolitan and much more diverse in its ecology. We show that Ramalina and its sister genus Namibialina diverged from each other at c. 48 Myrs, whereas Vermilacinia and Niebla split at c. 30 Myrs. The phylogeny of the fruticose genera remains unresolved to their ancestral crustose genera. Species delimitation within Namibialina and Ramalina is rather straightforward. The phylogeny and taxonomy of Vermilacinia are fully resolved, except for the two youngest clades of corticolous taxa, and support current taxonomy, including four new taxa described here. Secondary metabolite variation in Niebla generally coincides with major clades which are comprised of species complexes with still unresolved phylogenetic relationships. A micro-endemism pattern of allopatric species is strongly suspected for both genera, except for the corticolous taxa within Vermilacinia. Both Niebla and saxicolous Vermilacinia have chemotypes unique to species clades that are largely endemic to the Vizcaíno deserts. The following new taxa are described: Namibialina gen. nov. with N. melanothrix (comb. nov.) as type species, a single new species of Ramalina (R. krogiae) and four new species of Vermilacinia (V. breviloba, V. lacunosa, V. pustulata and V. reticulata). The new combination V. granulans is introduced. Two epithets are re-introduced for European Ramalina species: R. crispans (= R. peruviana auct. eur.) and R. rosacea (= R. bourgeana auct. p.p). A lectotype is designated for Vermilacinia procera. A key to saxicolous species of Vermilacinia is presented.
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Affiliation(s)
- Richard Spjut
- World Botanical Associates, PO Box 81145, Bakersfield, California 93380, USA World Botanical Associates Bakersfield, CA United States of America
| | - Antoine Simon
- Evolution and Conservation Biology Unit, Sart Tilman B22, Quartier Vallée 1, chemin de la vallée 4, B-4000 Liège, Belgium Evolution and Conservation Biology Unit Liège Belgium
| | - Martin Guissard
- Evolution and Conservation Biology Unit, Sart Tilman B22, Quartier Vallée 1, chemin de la vallée 4, B-4000 Liège, Belgium Evolution and Conservation Biology Unit Liège Belgium
| | - Nicolas Magain
- Evolution and Conservation Biology Unit, Sart Tilman B22, Quartier Vallée 1, chemin de la vallée 4, B-4000 Liège, Belgium Evolution and Conservation Biology Unit Liège Belgium
| | - Emmanuël Sérusiaux
- Evolution and Conservation Biology Unit, Sart Tilman B22, Quartier Vallée 1, chemin de la vallée 4, B-4000 Liège, Belgium Evolution and Conservation Biology Unit Liège Belgium
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Hernández-Hernández T, Wiens JJ. Why Are There So Many Flowering Plants? A Multiscale Analysis of Plant Diversification. Am Nat 2020; 195:948-963. [DOI: 10.1086/708273] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Ramiadantsoa T, Sirén J, Hanski I. Phylogenetic Comparative Method for Geographical Radiation. ANN ZOOL FENN 2017. [DOI: 10.5735/086.054.0121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Tanjona Ramiadantsoa
- Metapopulation Research Centre, Department of Biosciences, P.O. Box 65, FI-00014 University of Helsinki, Finland
- Department of Ecology, Evolution, and Behavior, University of Minnesota, 1987 Upper Buford Cir Saint Paul, MN 55108-6097, USA
- Department of Zoology, University of Wisconsin-Madison, 430 Lincoln Dr, Madison, WI 53706, USA
| | - Jukka Sirén
- Metapopulation Research Centre, Department of Biosciences, P.O. Box 65, FI-00014 University of Helsinki, Finland
| | - Ilkka Hanski
- Metapopulation Research Centre, Department of Biosciences, P.O. Box 65, FI-00014 University of Helsinki, Finland
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Wang JJ, Yang YP, Sun H, Wen J, Deng T, Nie ZL, Meng Y. The Biogeographic South-North Divide of Polygonatum (Asparagaceae Tribe Polygonateae) within Eastern Asia and Its Recent Dispersals in the Northern Hemisphere. PLoS One 2016; 11:e0166134. [PMID: 27812188 PMCID: PMC5094755 DOI: 10.1371/journal.pone.0166134] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Accepted: 10/24/2016] [Indexed: 11/18/2022] Open
Abstract
Eastern Asia (EA) is a key region for the diversification of flowering plants in the Northern Hemisphere, but few studies have focused on the biogeographic history within EA in the context of the other northern continents. Polygonatum is an important medicinal genus widely distributed in the Northern Hemisphere with its highest species richness in EA, and it represents an excellent model for studying the evolution of biogeographic patterns in this region. Divergence time estimation was used to examine the biogeographic history of Polygonatum based on nuclear ITS and four plastid sequences (rbcL, matK, psbA-trnH and trnC-petN) from 30 Polygonatum species and 35 outgroup taxa. The ancestral area of Polygonatum and subsequent dispersal routes were inferred using Bayes-Lagrange. Polygonatum was estimated to have originated in southern EA during the middle Miocene (14.34-13.57 Ma) with subsequent south-to-north expansion in the late Miocene. Multiple intercontinental dispersal events were inferred between EA and Europe or North America, and all of them have occurred recently in the late Miocene to Pliocene. The separation of Polygonatum into the south and north lineages and their subsequent diversifications in the late Miocene supports the existence of a biogeographic divide between the northern and southern parts of EA that also coincides with the retreat and redevelopment of the arid zone in EA in the Neogene. Our results demonstrate the complexity of biogeographic history of Polygonatum in the Northern Hemisphere including early vicariance followed by frequent and recent dispersals in the Neogene.
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Affiliation(s)
- Jia-Jian Wang
- Key Laboratory of Plant Resources Conservation and Utilization, College of Biology and Environmental Sciences, Jishou University, Jishou, Hunan 416000, China
| | - Yong-Ping Yang
- Key Laboratory for Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China
| | - Hang Sun
- Key Laboratory for Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China
| | - Jun Wen
- Department of Botany, National Museum of Natural History, MRC 166, Smithsonian Institution, Washington, DC 20013-7012, United States of America
| | - Tao Deng
- Key Laboratory for Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China
| | - Ze-Long Nie
- Key Laboratory of Plant Resources Conservation and Utilization, College of Biology and Environmental Sciences, Jishou University, Jishou, Hunan 416000, China
- * E-mail: (ZLN); (YM)
| | - Ying Meng
- Key Laboratory of Plant Resources Conservation and Utilization, College of Biology and Environmental Sciences, Jishou University, Jishou, Hunan 416000, China
- * E-mail: (ZLN); (YM)
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Carpenter RJ, Macphail MK, Jordan GJ, Hill RS. Fossil evidence for open, Proteaceae-dominated heathlands and fire in the Late Cretaceous of Australia. AMERICAN JOURNAL OF BOTANY 2015; 102:2092-107. [PMID: 26643888 DOI: 10.3732/ajb.1500343] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2015] [Accepted: 10/08/2015] [Indexed: 05/14/2023]
Abstract
PREMISE OF THE STUDY The origin of biomes is of great interest globally. Molecular phylogenetic and pollen evidence suggest that several plant lineages that now characterize open, burnt habitats of the sclerophyll biome, became established during the Late Cretaceous of Australia. However, whether this biome itself dates to that time is problematic, fundamentally because of the near-absence of relevant, appropriately aged, terrestrial plant macro- or mesofossils. METHODS We recovered, identified, and interpreted the ecological significance of fossil pollen, foliar and other remains from a section of core drilled in central Australia, which we dated as Late Campanian-Maastrichtian. KEY RESULTS The sediments contain plant fossils that indicate nutrient-limited, open, sclerophyllous vegetation and abundant charcoal as evidence of fire. Most interestingly, >30 pollen taxa and at least 12 foliage taxa are attributable to the important Gondwanan family Proteaceae, including several minute, amphistomatic, and sclerophyllous foliage forms consistent with subfamily Proteoideae. Microfossils, including an abundance of Sphagnales and other wetland taxa, provided strong evidence of a fenland setting. The local vegetation also included diverse Ericaceae and Liliales, as well as a range of ferns and gymnosperms. CONCLUSIONS The fossils provide strong evidence in support of hypotheses of great antiquity for fire and open vegetation in Australia, point to extraordinary persistence of Proteaceae that are now emblematic of the Mediterranean-type climate southwestern Australian biodiversity hotspot and raise the profile of open habitats as centers of ancient lineages.
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Affiliation(s)
- Raymond J Carpenter
- School of Biological Sciences, University of Tasmania, Private Bag 55, Hobart, Tas. 7001, Australia School of Biological Sciences, University of Adelaide, Adelaide, SA 5005, Australia
| | - Michael K Macphail
- Department of Archaeology & Natural History, College of Asia and the Pacific, Australian National University, Canberra ACT 0200
| | - Gregory J Jordan
- School of Biological Sciences, University of Tasmania, Private Bag 55, Hobart, Tas. 7001, Australia
| | - Robert S Hill
- School of Biological Sciences, University of Adelaide, Adelaide, SA 5005, Australia Environment Institute, University of Adelaide, Adelaide, SA 5005, Australia
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Onstein RE, Carter RJ, Xing Y, Richardson JE, Linder HP. Do Mediterranean-type ecosystems have a common history?-Insights from the Buckthorn family (Rhamnaceae). Evolution 2015; 69:756-71. [DOI: 10.1111/evo.12605] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2014] [Accepted: 12/30/2014] [Indexed: 11/28/2022]
Affiliation(s)
- Renske E. Onstein
- Institute of Systematic Botany; University of Zurich; Zollikerstrasse 107 8008 Zurich Switzerland
| | - Richard J. Carter
- Institute of Systematic Botany; University of Zurich; Zollikerstrasse 107 8008 Zurich Switzerland
- Cottage Science; Carterton New Zealand
| | - Yaowu Xing
- Institute of Systematic Botany; University of Zurich; Zollikerstrasse 107 8008 Zurich Switzerland
- Department of Botany; Field Museum of Natural History; 1400 South Lake Shore Drive Chicago Illinois 60605
| | - James E. Richardson
- Royal Botanic Garden Edinburgh; 20a Inverleith Row Edinburgh EH3 5LR United Kingdom
- Universidad de Los Andes; Apartado Aéreo 4976 Bogotá Colombia
| | - H. Peter Linder
- Institute of Systematic Botany; University of Zurich; Zollikerstrasse 107 8008 Zurich Switzerland
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Baldwin BG. Origins of Plant Diversity in the California Floristic Province. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2014. [DOI: 10.1146/annurev-ecolsys-110512-135847] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Recent biogeographic and evolutionary studies have led to improved understanding of the origins of exceptionally high plant diversity in the California Floristic Province (CA-FP). Spatial analyses of Californian plant diversity and endemism reinforce the importance of geographically isolated areas of high topographic and edaphic complexity as floristic hot spots, in which the relative influence of factors promoting evolutionary divergence and buffering of lineages against extinction has gained increased attention. Molecular phylogenetic studies spanning the flora indicate that immediate sources of CA-FP lineages bearing endemic species diversity have been mostly within North America—especially within the west and southwest—even for groups of north temperate affinity, and that most diversification of extant lineages in the CA-FP has occurred since the mid-Miocene, with the transition toward summer-drying. Process-focused studies continue to implicate environmental heterogeneity at local or broad geographic scales in evolutionary divergence within the CA-FP, often associated with reproductive or life-history shifts or sometimes hybridization.
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Affiliation(s)
- Bruce G. Baldwin
- Jepson Herbarium and Department of Integrative Biology, University of California, Berkeley, California 94720-2465
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