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Rodrigues AP, Pais IP, Leitão AE, Dubberstein D, Lidon FC, Marques I, Semedo JN, Rakocevic M, Scotti-Campos P, Campostrini E, Rodrigues WP, Simões-Costa MC, Reboredo FH, Partelli FL, DaMatta FM, Ribeiro-Barros AI, Ramalho JC. Uncovering the wide protective responses in Coffea spp. leaves to single and superimposed exposure of warming and severe water deficit. FRONTIERS IN PLANT SCIENCE 2024; 14:1320552. [PMID: 38259931 PMCID: PMC10801242 DOI: 10.3389/fpls.2023.1320552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 11/30/2023] [Indexed: 01/24/2024]
Abstract
Climate changes boosted the frequency and severity of drought and heat events, with aggravated when these stresses occur simultaneously, turning crucial to unveil the plant response mechanisms to such harsh conditions. Therefore, plant responses/resilience to single and combined exposure to severe water deficit (SWD) and heat were assessed in two cultivars of the main coffee-producing species: Coffea arabica cv. Icatu and C. canephora cv. Conilon Clone 153 (CL153). Well-watered plants (WW) were exposed to SWD under an adequate temperature of 25/20°C (day/night), and thereafter submitted to a gradual increase up to 42/30°C, and a 14-d recovery period (Rec14). Greater protective response was found to single SWD than to single 37/28°C and/or 42/30°C (except for HSP70) in both cultivars, but CL153-SWD plants showed the larger variations of leaf thermal imaging crop water stress index (CWSI, 85% rise at 37/28°C) and stomatal conductance index (IG, 66% decline at 25/20°C). Both cultivars revealed great resilience to SWD and/or 37/28°C, but a tolerance limit was surpassed at 42/30°C. Under stress combination, Icatu usually displayed lower impacts on membrane permeability, and PSII function, likely associated with various responses, usually mostly driven by drought (but often kept or even strengthened under SWD and 42/30°C). These included the photoprotective zeaxanthin and lutein, antioxidant enzymes (superoxide dismutase, Cu,Zn-SOD; ascorbate peroxidase, APX), HSP70, arabinose and mannitol (involving de novo sugar synthesis), contributing to constrain lipoperoxidation. Also, only Icatu showed a strong reinforcement of glutathione reductase activity under stress combination. In general, the activities of antioxidative enzymes declined at 42/30°C (except Cu,Zn-SOD in Icatu and CAT in CL153), but HSP70 and raffinose were maintained higher in Icatu, whereas mannitol and arabinose markedly increased in CL153. Overall, a great leaf plasticity was found, especially in Icatu that revealed greater responsiveness of coordinated protection under all experimental conditions, justifying low PIChr and absence of lipoperoxidation increase at 42/30°C. Despite a clear recovery by Rec14, some aftereffects persisted especially in SWD plants (e.g., membranes), relevant in terms of repeated stress exposure and full plant recovery to stresses.
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Affiliation(s)
- Ana P. Rodrigues
- Laboratório de Interações Planta-Ambiente e Biodiversidade (PlantStress & Biodiversity), Centro de Estudos Florestais (CEF), Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Oeiras, Lisboa, Portugal
- Laboratório Associado TERRA, Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Lisboa, Portugal
| | - Isabel P. Pais
- Unidade de Investigação em Biotecnologia e Recursos Genéticos, Instituto Nacional de Investigação Agrária e Veterinária, I.P. (INIAV), Oeiras, Portugal
- Unidade de GeoBiociências, GeoEngenharias e GeoTecnologias (GeoBioTec), Faculdade de Ciências e Tecnologia (FCT), Universidade NOVA de Lisboa (UNL), Caparica, Portugal
| | - António E. Leitão
- Laboratório de Interações Planta-Ambiente e Biodiversidade (PlantStress & Biodiversity), Centro de Estudos Florestais (CEF), Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Oeiras, Lisboa, Portugal
- Laboratório Associado TERRA, Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Lisboa, Portugal
- Unidade de GeoBiociências, GeoEngenharias e GeoTecnologias (GeoBioTec), Faculdade de Ciências e Tecnologia (FCT), Universidade NOVA de Lisboa (UNL), Caparica, Portugal
| | - Danielly Dubberstein
- Laboratório de Interações Planta-Ambiente e Biodiversidade (PlantStress & Biodiversity), Centro de Estudos Florestais (CEF), Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Oeiras, Lisboa, Portugal
- Laboratório Associado TERRA, Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Lisboa, Portugal
- Centro Univ. Norte do Espírito Santo (CEUNES), Dept. Ciências Agrárias e Biológicas (DCAB), Univ. Federal Espírito Santo (UFES), São Mateus, ES, Brazil
- Assistência Técnica e Gerencial em Cafeicultura - Serviço Nacional de Aprendizagem Rural (SENAR), Porto Velho, RO, Brazil
| | - Fernando C. Lidon
- Unidade de GeoBiociências, GeoEngenharias e GeoTecnologias (GeoBioTec), Faculdade de Ciências e Tecnologia (FCT), Universidade NOVA de Lisboa (UNL), Caparica, Portugal
| | - Isabel Marques
- Laboratório de Interações Planta-Ambiente e Biodiversidade (PlantStress & Biodiversity), Centro de Estudos Florestais (CEF), Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Oeiras, Lisboa, Portugal
- Laboratório Associado TERRA, Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Lisboa, Portugal
| | - José N. Semedo
- Unidade de Investigação em Biotecnologia e Recursos Genéticos, Instituto Nacional de Investigação Agrária e Veterinária, I.P. (INIAV), Oeiras, Portugal
- Unidade de GeoBiociências, GeoEngenharias e GeoTecnologias (GeoBioTec), Faculdade de Ciências e Tecnologia (FCT), Universidade NOVA de Lisboa (UNL), Caparica, Portugal
| | - Miroslava Rakocevic
- Centro Univ. Norte do Espírito Santo (CEUNES), Dept. Ciências Agrárias e Biológicas (DCAB), Univ. Federal Espírito Santo (UFES), São Mateus, ES, Brazil
| | - Paula Scotti-Campos
- Unidade de Investigação em Biotecnologia e Recursos Genéticos, Instituto Nacional de Investigação Agrária e Veterinária, I.P. (INIAV), Oeiras, Portugal
- Unidade de GeoBiociências, GeoEngenharias e GeoTecnologias (GeoBioTec), Faculdade de Ciências e Tecnologia (FCT), Universidade NOVA de Lisboa (UNL), Caparica, Portugal
| | - Eliemar Campostrini
- Setor de Fisiologia Vegetal, Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Rio de Janeiro, Brazil
| | - Weverton P. Rodrigues
- Setor de Fisiologia Vegetal, Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Rio de Janeiro, Brazil
- Centro de Ciências Agrárias, Naturais e Letras, Universidade Estadual da Região Tocantina do Maranhão, Maranhão, Brazil
| | - Maria Cristina Simões-Costa
- Laboratório de Interações Planta-Ambiente e Biodiversidade (PlantStress & Biodiversity), Centro de Estudos Florestais (CEF), Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Oeiras, Lisboa, Portugal
- Laboratório Associado TERRA, Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Lisboa, Portugal
| | - Fernando H. Reboredo
- Unidade de GeoBiociências, GeoEngenharias e GeoTecnologias (GeoBioTec), Faculdade de Ciências e Tecnologia (FCT), Universidade NOVA de Lisboa (UNL), Caparica, Portugal
| | - Fábio L. Partelli
- Centro Univ. Norte do Espírito Santo (CEUNES), Dept. Ciências Agrárias e Biológicas (DCAB), Univ. Federal Espírito Santo (UFES), São Mateus, ES, Brazil
| | - Fábio M. DaMatta
- Departamento de Biologia Vegetal, Universidade Federal Viçosa (UFV), Viçosa, MG, Brazil
| | - Ana I. Ribeiro-Barros
- Laboratório de Interações Planta-Ambiente e Biodiversidade (PlantStress & Biodiversity), Centro de Estudos Florestais (CEF), Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Oeiras, Lisboa, Portugal
- Laboratório Associado TERRA, Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Lisboa, Portugal
- Unidade de GeoBiociências, GeoEngenharias e GeoTecnologias (GeoBioTec), Faculdade de Ciências e Tecnologia (FCT), Universidade NOVA de Lisboa (UNL), Caparica, Portugal
| | - José C. Ramalho
- Laboratório de Interações Planta-Ambiente e Biodiversidade (PlantStress & Biodiversity), Centro de Estudos Florestais (CEF), Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Oeiras, Lisboa, Portugal
- Laboratório Associado TERRA, Instituto Superior de Agronomia, Universidade de Lisboa, (ISA/ULisboa), Lisboa, Portugal
- Unidade de GeoBiociências, GeoEngenharias e GeoTecnologias (GeoBioTec), Faculdade de Ciências e Tecnologia (FCT), Universidade NOVA de Lisboa (UNL), Caparica, Portugal
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Dispersal and plant arrangement condition the timing and magnitude of coffee rust infection. Ecol Modell 2023. [DOI: 10.1016/j.ecolmodel.2022.110206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Rakocevic M, Batista ER, Pazianotto RAA, Scholz MBS, Souza GAR, Campostrini E, Ramalho JC. Leaf gas exchange and bean quality fluctuations over the whole canopy vertical profile of Arabic coffee cultivated under elevated CO 2. FUNCTIONAL PLANT BIOLOGY : FPB 2021; 48:469-482. [PMID: 33423738 DOI: 10.1071/fp20298] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Accepted: 11/29/2020] [Indexed: 06/12/2023]
Abstract
Leaves in different positions respond differently to dynamic fluctuations in light availability, temperature and to multiple environmental stresses. The current hypothesis states that elevated atmospheric CO2 (e[CO2]) can compensate for the negative effects of water scarcity regarding leaf gas exchanges and coffee bean quality traits over the canopy vertical profile, in interactions with light and temperature microclimate during the two final stages of berry development. Responses of Coffea arabica L. were observed in the 5th year of a free air CO2 enrichment experiment (FACE) under water-limited rainfed conditions. The light dependent leaf photosynthesis curves (A/PAR) were modelled for leaves sampled from vertical profile divided into four 50-cm thick layers. e[CO2] significantly increased gross photosynthesis (AmaxGross), the apparent quantum yield efficiency, light compensation point, light saturation point (LSP) and dark respiration rate (Rd). As a specific stage response, considering berry ripening, all parameters calculated from A/PAR were insensitive to leaf position over the vertical profile. Lack of a progressive increase in AmaxGross and LSP was observed over the whole canopy profile in both stages, especially in the two lowest layers, indicating leaf plasticity to light. Negative correlation of Rd to leaf temperature (TL) was observed under e[CO2] in both stages. Under e[CO2], stomatal conductance was also negatively correlated with TL, reducing leaf transpiration and Rd even with increasing TL. This indicated coffee leaf acclimation to elevated temperatures under e[CO2] and water restriction. The e[CO2] attenuation occurred under water restriction, especially in A and water use efficiency, in both stages, with the exception of the lowest two layers. Under e[CO2], coffee produced berries in moderate- and high light level layers, with homogeneous distribution among them, contrasted to the heterogeneous distribution under actual CO2. e[CO2] led to increased caffeine content in the highest layer, with reduction of chlorogenic acid and lipids under moderate light and to raised levels of sugar in the shaded low layer. The ability of coffee to respond to e[CO2] under limited soil water was expressed through the integrated individual leaf capacities to use the available light and water, resulting in final plant investments in new reproductive structures in moderate and high light level layers.
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Affiliation(s)
- Miroslava Rakocevic
- Northern Rio de Janeiro State University - UENF, Plant Physiology Lab, Av. Alberto Lamego 2000, 28013-602 Campos dos Goytacazes-RJ, Brazil; and Embrapa Meio Ambiente, Rodovia SP 340 km 127.5, 13820-000 Jaguariúna-SP, Brazil; and Corresponding author.
| | - Eunice R Batista
- Embrapa Meio Ambiente, Rodovia SP 340 km 127.5, 13820-000 Jaguariúna-SP, Brazil
| | | | - Maria B S Scholz
- IAPAR, Department of Ecophysiology, Rodovia Celso Garcia Cid, km 375, PO Box 10030, 86047-902 Londrina-PR, Brazil
| | - Guilherme A R Souza
- Northern Rio de Janeiro State University - UENF, Plant Physiology Lab, Av. Alberto Lamego 2000, 28013-602 Campos dos Goytacazes-RJ, Brazil
| | - Eliemar Campostrini
- Northern Rio de Janeiro State University - UENF, Plant Physiology Lab, Av. Alberto Lamego 2000, 28013-602 Campos dos Goytacazes-RJ, Brazil
| | - José C Ramalho
- University of Lisbon, School of Agriculture, Plant Stress and Biodiversity, Forest Research Center, 2784-505 Oeiras, Portugal; and Universidade NOVA de Lisboa, Faculdade de Ciências e Tecnologia, GeoBioTec, 2829-516 Caparica, Portugal
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Marcheafave GG, Tormena CD, Terrile AE, Salamanca-Neto CAR, Sartori ER, Rakocevic M, Bruns RE, Scarminio IS, Pauli ED. Ecometabolic mixture design-fingerprints from exploratory multi-block data analysis in Coffea arabica beans from climate changes: Elevated carbon dioxide and reduced soil water availability. Food Chem 2021; 362:129716. [PMID: 34006394 DOI: 10.1016/j.foodchem.2021.129716] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 02/26/2021] [Accepted: 03/21/2021] [Indexed: 01/14/2023]
Abstract
Ecometabolic mixture design-fingerprinting in coffee cultivated under climate change was chemically explored using ComDim. Multi-blocks were formed using UV, NIRS, 1H NMR, SWV, and FT-IR data. ComDim investigated all these different fingerprints according to the extractor solvent and in virtue of atmospheric CO2 increase. Ethanol and ethanol-dichloromethane showed the best separations due to CO2 environment. 1H NMR loading indicate increases of fatty acids, caffeine, trigonelline, and glucose in beans under current CO2 levels, whereas quinic acid/chlorogenic acids, malic acid, and kahweol/cafestol increased in beans under elevated CO2 conditions. SWV indicated quercetin and chlorogenic acid as important compounds in coffee beans cultivated under current and elevated CO2, respectively. Based on the ethanol and ethanol-dichloromethane fingerprints, k-NN correctly classified the beans cultivated under different carbon dioxide environments and water availabilities, confirming the existence of metabolic changes due to climate changes. SWV proved to be promising compared with widely used spectrometric methods.
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Affiliation(s)
- Gustavo Galo Marcheafave
- Laboratory of Chemometrics in Natural Sciences (LQCN), Department of Chemistry, State University of Londrina, CP 6001, 86051-990 Londrina, PR, Brazil.
| | - Cláudia Domiciano Tormena
- Laboratory of Chemometrics in Natural Sciences (LQCN), Department of Chemistry, State University of Londrina, CP 6001, 86051-990 Londrina, PR, Brazil
| | - Amelia Elena Terrile
- Department of Chemistry, Federal University of Technology - Paraná, Av. dos Pioneiros 3131, 86036-370 Londrina, PR, Brazil
| | - Carlos Alberto Rossi Salamanca-Neto
- Laboratory of Electroanalytical and Sensors (LAES), Department of Chemistry, State University of Londrina, CP 6001, 86051-990 Londrina, PR, Brazil
| | - Elen Romão Sartori
- Laboratory of Electroanalytical and Sensors (LAES), Department of Chemistry, State University of Londrina, CP 6001, 86051-990 Londrina, PR, Brazil
| | - Miroslava Rakocevic
- Northern Rio de Janeiro State University - UENF, Plant Physiology Lab, Av. Alberto Lamego 2000, 28013-602 Campos dos Goytacazes, RJ, Brazil
| | - Roy Edward Bruns
- Institute of Chemistry, State University of Campinas, CP 6154, 13083-970 Campinas, SP, Brazil
| | - Ieda Spacino Scarminio
- Laboratory of Chemometrics in Natural Sciences (LQCN), Department of Chemistry, State University of Londrina, CP 6001, 86051-990 Londrina, PR, Brazil.
| | - Elis Daiane Pauli
- Institute of Chemistry, State University of Campinas, CP 6154, 13083-970 Campinas, SP, Brazil.
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Bernado WDP, Rakocevic M, Santos AR, Ruas KF, Baroni DF, Abraham AC, Pireda S, Oliveira DDS, Cunha MD, Ramalho JC, Campostrini E, Rodrigues WP. Biomass and Leaf Acclimations to Ultraviolet Solar Radiation in Juvenile Plants of Coffea arabica and C. canephora. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10040640. [PMID: 33800618 PMCID: PMC8065693 DOI: 10.3390/plants10040640] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 03/12/2021] [Accepted: 03/24/2021] [Indexed: 06/12/2023]
Abstract
Despite the negative impacts of increased ultraviolet radiation intensity on plants, these organisms continue to grow and produce under the increased environmental UV levels. We hypothesized that ambient UV intensity can generate acclimations in plant growth, leaf morphology, and photochemical functioning in modern genotypes of Coffea arabica and C. canephora. Coffee plants were cultivated for ca. six months in a mini greenhouse under either near ambient (UVam) or reduced (UVre) ultraviolet regimes. At the plant scale, C. canephora was substantially more impacted by UVam when compared to C. arabica, investing more carbon in all juvenile plant components than under UVre. When subjected to UVam, both species showed anatomic adjustments at the leaf scale, such as increases in stomatal density in C. canephora, at the abaxial and adaxial cuticles in both species, and abaxial epidermal thickening in C. arabica, although without apparent impact on the thickness of palisade and spongy parenchyma. Surprisingly, C. arabica showed more efficient energy dissipation mechanism under UVam than C. canephora. UVam promoted elevated protective carotenoid content and a greater use of energy through photochemistry in both species, as reflected in the photochemical quenching increases. This was associated with an altered chlorophyll a/b ratio (significantly only in C. arabica) that likely promoted a greater capability to light energy capture. Therefore, UV levels promoted different modifications between the two Coffea sp. regarding plant biomass production and leaf morphology, including a few photochemical differences between species, suggesting that modifications at plant and leaf scale acted as an acclimation response to actual UV intensity.
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Affiliation(s)
- Wallace de Paula Bernado
- Setor de Fisiologia Vegetal, Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Avenida Alberto Lamego, 2000, Parque Califórnia, Campos dos Goytacazes, 28013-602 Rio de Janeiro, Brazil; (W.d.P.B.); (A.R.S.); (K.F.R.); (D.F.B.); (A.C.A.)
| | - Miroslava Rakocevic
- Setor de Fisiologia Vegetal, Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Avenida Alberto Lamego, 2000, Parque Califórnia, Campos dos Goytacazes, 28013-602 Rio de Janeiro, Brazil; (W.d.P.B.); (A.R.S.); (K.F.R.); (D.F.B.); (A.C.A.)
| | - Anne Reis Santos
- Setor de Fisiologia Vegetal, Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Avenida Alberto Lamego, 2000, Parque Califórnia, Campos dos Goytacazes, 28013-602 Rio de Janeiro, Brazil; (W.d.P.B.); (A.R.S.); (K.F.R.); (D.F.B.); (A.C.A.)
| | - Katherine Fraga Ruas
- Setor de Fisiologia Vegetal, Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Avenida Alberto Lamego, 2000, Parque Califórnia, Campos dos Goytacazes, 28013-602 Rio de Janeiro, Brazil; (W.d.P.B.); (A.R.S.); (K.F.R.); (D.F.B.); (A.C.A.)
| | - Danilo Força Baroni
- Setor de Fisiologia Vegetal, Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Avenida Alberto Lamego, 2000, Parque Califórnia, Campos dos Goytacazes, 28013-602 Rio de Janeiro, Brazil; (W.d.P.B.); (A.R.S.); (K.F.R.); (D.F.B.); (A.C.A.)
| | - Ana Cabrera Abraham
- Setor de Fisiologia Vegetal, Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Avenida Alberto Lamego, 2000, Parque Califórnia, Campos dos Goytacazes, 28013-602 Rio de Janeiro, Brazil; (W.d.P.B.); (A.R.S.); (K.F.R.); (D.F.B.); (A.C.A.)
| | - Saulo Pireda
- Laboratório de Biologia Celular e Tecidual, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense–Darcy Ribeiro, Campos dos Goytacazes, 28013-602 RJ Rio de Janeiro, Brazil; (S.P.); (D.d.S.O.); (M.D.C.)
| | - Dhiego da Silva Oliveira
- Laboratório de Biologia Celular e Tecidual, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense–Darcy Ribeiro, Campos dos Goytacazes, 28013-602 RJ Rio de Janeiro, Brazil; (S.P.); (D.d.S.O.); (M.D.C.)
| | - Maura Da Cunha
- Laboratório de Biologia Celular e Tecidual, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense–Darcy Ribeiro, Campos dos Goytacazes, 28013-602 RJ Rio de Janeiro, Brazil; (S.P.); (D.d.S.O.); (M.D.C.)
| | - José Cochicho Ramalho
- PlantStress and Biodiversity Lab., Centro de Estudos Florestais (CEF), Instituto Superior de Agronomia (ISA), Universidade de Lisboa (ULisboa), Av. República, 2784-505 Oeiras, Portugal; or
- Unidade de Geobiociências, Geoengenharias e Geotecnologias (GeoBioTec), Faculdade de Ciências Tecnologia (FCT), Universidade NOVA de Lisboa (UNL), 2829-516 Caparica, Portugal
| | - Eliemar Campostrini
- Setor de Fisiologia Vegetal, Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Avenida Alberto Lamego, 2000, Parque Califórnia, Campos dos Goytacazes, 28013-602 Rio de Janeiro, Brazil; (W.d.P.B.); (A.R.S.); (K.F.R.); (D.F.B.); (A.C.A.)
| | - Weverton Pereira Rodrigues
- Setor de Fisiologia Vegetal, Laboratório de Melhoramento Genético Vegetal, Centro de Ciências e Tecnologias Agropecuárias, Universidade Estadual do Norte Fluminense, Avenida Alberto Lamego, 2000, Parque Califórnia, Campos dos Goytacazes, 28013-602 Rio de Janeiro, Brazil; (W.d.P.B.); (A.R.S.); (K.F.R.); (D.F.B.); (A.C.A.)
- Centro de Ciências Agrárias, Naturais e Letras, Universidade Estadual da Região Tocantina do Maranhão, Avenida Brejo do Pinto, S/N, 65975-000 Maranhão, Brazil
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6
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Marcheafave GG, Tormena CD, Mattos LE, Liberatti VR, Ferrari ABS, Rakocevic M, Bruns RE, Scarminio IS, Pauli ED. The main effects of elevated CO 2 and soil-water deficiency on 1H NMR-based metabolic fingerprints of Coffea arabica beans by factorial and mixture design. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 749:142350. [PMID: 33370915 DOI: 10.1016/j.scitotenv.2020.142350] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 08/20/2020] [Accepted: 09/09/2020] [Indexed: 06/12/2023]
Abstract
The metabolic response of Coffea arabica trees in the face of the rising atmospheric concentration of carbon dioxide (CO2) combined with the reduction in soil-water availability is complex due to the various (bio)chemical feedbacks. Modern analytical tools and the experimental advance of agronomic science tend to advance in the understanding of the metabolic complexity of plants. In this work, Coffea arabica trees were grown in a Free-Air Carbon Dioxide Enrichment dispositive under factorial design (22) conditions considering two CO2 levels and two soil-water availabilities. The 1H NMR mixture design-fingerprinting effects of CO2 and soil-water levels on beans were strategically investigated using the principal component analysis (PCA), analysis of variance (ANOVA) - simultaneous component analysis (ASCA) and partial least squares-discriminant analysis (PLS-DA). From the ASCA, the CO2 factor had a significant effect on changing the 1H NMR profile of fingerprints. The soil-water factor and interaction (CO2 × soil-water) were not significant. 1H NMR fingerprints with PCA, ASCA and PLS-DA analysis determined spectral profiles for fatty acids, caffeine, trigonelline and glucose increases in beans from current CO2, while quinic acid/chlorogenic acids, malic acid and kahweol/cafestol increased in coffee beans from elevated CO2. PLS-DA results revealed a good classification performance between the significant effect of the atmospheric CO2 levels on the fingerprints, regardless of the soil-water availabilities. Finally, the PLS-DA model showed good prediction ability, successfully classifying validation data-set of coffee beans collected over the vertical profile of the plants and included several fingerprints of different extracting solvents. The results of this investigation suggest that the association of experimental design, mixture design, PCA, ASCA and PLS-DA can provide accurate information on a series of metabolic changes provoked by climate changes in products of commercial importance, in addition to minimizing the extra work necessary in classic analytical approaches, encouraging the development of similar strategies.
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Affiliation(s)
- Gustavo Galo Marcheafave
- Laboratory of Chemometrics in Natural Sciences (LQCN), Department of Chemistry, State University of Londrina, CP 6001, 86051-990 Londrina, PR, Brazil.
| | - Cláudia Domiciano Tormena
- Laboratory of Chemometrics in Natural Sciences (LQCN), Department of Chemistry, State University of Londrina, CP 6001, 86051-990 Londrina, PR, Brazil
| | - Lavínia Eduarda Mattos
- Laboratory of Chemometrics in Natural Sciences (LQCN), Department of Chemistry, State University of Londrina, CP 6001, 86051-990 Londrina, PR, Brazil
| | - Vanessa Rocha Liberatti
- Department of Chemistry, State University of Londrina, CP 6001, 86051-990 Londrina, PR, Brazil
| | | | - Miroslava Rakocevic
- Northern Rio de Janeiro State University - UENF, Plant Physiology Lab, Av. Alberto Lamego 2000, 28013-602 Campos dos Goytacazes, RJ, Brazil; Embrapa Environment, Rodovia SP 340, Km 127.5, 13820-000 Jaguariúna, SP, Brazil
| | - Roy Edward Bruns
- Institute of Chemistry, State University of Campinas, CP 6154, 13083-970 Campinas, SP, Brazil
| | - Ieda Spacino Scarminio
- Laboratory of Chemometrics in Natural Sciences (LQCN), Department of Chemistry, State University of Londrina, CP 6001, 86051-990 Londrina, PR, Brazil.
| | - Elis Daiane Pauli
- Institute of Chemistry, State University of Campinas, CP 6154, 13083-970 Campinas, SP, Brazil
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Marcheafave GG, Pauli ED, Tormena CD, Ortiz MCV, de Almeida AG, Rakocevic M, Bruns RE, Scarminio IS. Factorial design fingerprint discrimination of Coffea arabica beans under elevated carbon dioxide and limited water conditions. Talanta 2020; 209:120591. [DOI: 10.1016/j.talanta.2019.120591] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2019] [Revised: 10/28/2019] [Accepted: 11/23/2019] [Indexed: 10/25/2022]
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Marcheafave GG, Pauli ED, Tormena CD, Mattos LE, de Almeida AG, Rakocevic M, Bruns RE, Scarminio IS. Irrigated and CO2 level effects on metabolism in Coffea arabica beans from mixture design – near infrared fingerprints. Microchem J 2020. [DOI: 10.1016/j.microc.2019.104276] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Tormena CD, Marcheafave GG, Pauli ED, Bruns RE, Scarminio IS. Potential biomonitoring of atmospheric carbon dioxide in Coffea arabica leaves using near-infrared spectroscopy and partial least squares discriminant analysis. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:30356-30364. [PMID: 31432374 DOI: 10.1007/s11356-019-06163-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Accepted: 08/07/2019] [Indexed: 06/10/2023]
Abstract
The potencial of Coffea arabica leaves as bioindicators of atmospheric carbon dioxide (CO2) was evaluated in a free-air carbon dioxide enrichment (FACE) experiment by using near-infrared reflectance (NIR) spectroscopy for direct analysis and partial least squares discriminant analysis (PLS-DA). A supervised classification model was built and validated from the spectra of coffee leaves grown under elevated and current CO2 levels. PLS-DA allowed correct test set classification of 92% of the elevated-CO2 level leaves and 100% of the current-CO2 level leaves. The spectral bands accounting for the discrimination of the elevated-CO2 leaves were at 1657 and 1698 nm, as indicated by the variable importance in the projection (VIP) score together with the regression coefficients. Seven months after suspension of enriched CO2, returning to current-CO2 levels, new spectral measurements were made and subjected to PLS-DA analysis. The predictive model correctly classified all leaves as grown under current-CO2 levels. The fingerprints suggest that after suspension of elevated-CO2, the spectral changes observed previously disappeared. The recovery could be triggered by two reasons: the relief of the stress stimulus or the perception of a return of favorable conditions. In addition, the results demonstrate that NIR spectroscopy can provide a rapid, nondestructive, and environmentally friendly method for biomonitoring leaves suffering environmental modification. Finally, C. arabica leaves associated with NIR and mathematical models have the potential to become a good biomonitoring system.
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Affiliation(s)
- Cláudia Domiciano Tormena
- Laboratório de Quimiometria em Ciências Naturais, Departamento de Química, Universidade Estadual de Londrina, CP 6001, Londrina, PR, 86051-990, Brazil
| | - Gustavo Galo Marcheafave
- Laboratório de Quimiometria em Ciências Naturais, Departamento de Química, Universidade Estadual de Londrina, CP 6001, Londrina, PR, 86051-990, Brazil.
| | - Elis Daiane Pauli
- Instituto de Química, Universidade Estadual de Campinas, CP 6154, Campinas, SP, 13083-970, Brazil
| | - Roy Edward Bruns
- Instituto de Química, Universidade Estadual de Campinas, CP 6154, Campinas, SP, 13083-970, Brazil
| | - Ieda Spacino Scarminio
- Laboratório de Quimiometria em Ciências Naturais, Departamento de Química, Universidade Estadual de Londrina, CP 6001, Londrina, PR, 86051-990, Brazil.
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Tormena CD, Marcheafave GG, Rakocevic M, Bruns RE, Scarminio IS. Sequential mixture design optimization for divergent metabolite analysis: Enriched carbon dioxide effects on Coffea arabica L. leaves and buds. Talanta 2019; 191:382-389. [DOI: 10.1016/j.talanta.2018.09.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Revised: 08/31/2018] [Accepted: 09/01/2018] [Indexed: 11/28/2022]
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