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For: Howe DK, Baer CF, Denver DR. High rate of large deletions in Caenorhabditis briggsae mitochondrial genome mutation processes. Genome Biol Evol 2009;2:29-38. [PMID: 20333220 PMCID: PMC2839355 DOI: 10.1093/gbe/evp055] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/19/2009] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Estes S, Dietz ZP, Katju V, Bergthorsson U. Evolutionary codependency: insights into the mitonuclear interaction landscape from experimental and wild Caenorhabditis nematodes. Curr Opin Genet Dev 2023;81:102081. [PMID: 37421904 DOI: 10.1016/j.gde.2023.102081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 06/07/2023] [Accepted: 06/08/2023] [Indexed: 07/10/2023]
2
Qing X, Peng H, Ma J, Zhang YM, Li H, Peng D, Wang X, Long T. Phylogeography of Chinese cereal cyst nematodes sheds lights on their origin and dispersal. Evol Appl 2022;15:1236-1248. [PMID: 36051465 PMCID: PMC9423084 DOI: 10.1111/eva.13452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Revised: 07/09/2022] [Accepted: 07/15/2022] [Indexed: 11/29/2022]  Open
3
Subbotin SA, Roubtsova TV, Bostock RM, Tanha Maafi Z, Chizhov VN. DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Humuli group from the genus Heterodera (Tylenchida: Heteroderidae). NEMATOLOGY 2022. [DOI: 10.1163/15685411-bja10176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
4
Camus MF, Alexander-Lawrie B, Sharbrough J, Hurst GDD. Inheritance through the cytoplasm. Heredity (Edinb) 2022;129:31-43. [PMID: 35525886 PMCID: PMC9273588 DOI: 10.1038/s41437-022-00540-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 04/19/2022] [Accepted: 04/20/2022] [Indexed: 12/11/2022]  Open
5
Waneka G, Svendsen JM, Havird JC, Sloan DB. Mitochondrial mutations in Caenorhabditis elegans show signatures of oxidative damage and an AT-bias. Genetics 2021;219:6346985. [PMID: 34849888 DOI: 10.1093/genetics/iyab116] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Accepted: 07/09/2021] [Indexed: 01/25/2023]  Open
6
Lax P, Gonzalez‐Ittig RE, Rondan Dueñas JC, Andrade AJ, Gardenal CN, Franco J, Doucet ME. Decrypting species in the Nacobbus aberrans (Nematoda: Pratylenchidae) complex using integrative taxonomy. ZOOL SCR 2021. [DOI: 10.1111/zsc.12494] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
7
Nguyen DT, Wu B, Long H, Zhang N, Patterson C, Simpson S, Morris K, Thomas WK, Lynch M, Hao W. Variable Spontaneous Mutation and Loss of Heterozygosity among Heterozygous Genomes in Yeast. Mol Biol Evol 2021;37:3118-3130. [PMID: 33219379 DOI: 10.1093/molbev/msaa150] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
8
Nguyen DT, Wu B, Xiao S, Hao W. Evolution of a Record-Setting AT-Rich Genome: Indel Mutation, Recombination, and Substitution Bias. Genome Biol Evol 2020;12:2344-2354. [PMID: 32986811 PMCID: PMC7846184 DOI: 10.1093/gbe/evaa202] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/19/2020] [Indexed: 12/16/2022]  Open
9
Wagner JT, Howe DK, Estes S, Denver DR. Mitochondrial DNA Variation and Selfish Propagation Following Experimental Bottlenecking in Two Distantly Related Caenorhabditis briggsae Isolates. Genes (Basel) 2020;11:genes11010077. [PMID: 31936803 PMCID: PMC7016712 DOI: 10.3390/genes11010077] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Revised: 01/06/2020] [Accepted: 01/08/2020] [Indexed: 12/11/2022]  Open
10
Sullins JA, Coleman-Hulbert AL, Gallegos A, Howe DK, Denver DR, Estes S. Complex Transmission Patterns and Age-Related Dynamics of a Selfish mtDNA Deletion. Integr Comp Biol 2019;59:983-993. [PMID: 31318034 PMCID: PMC6797909 DOI: 10.1093/icb/icz128] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
11
Johri P, Marinov GK, Doak TG, Lynch M. Population Genetics of Paramecium Mitochondrial Genomes: Recombination, Mutation Spectrum, and Efficacy of Selection. Genome Biol Evol 2019;11:1398-1416. [PMID: 30980669 PMCID: PMC6505448 DOI: 10.1093/gbe/evz081] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/09/2019] [Indexed: 12/11/2022]  Open
12
Stegeman GW, Baird SE, Ryu WS, Cutter AD. Genetically Distinct Behavioral Modules Underlie Natural Variation in Thermal Performance Curves. G3 (BETHESDA, MD.) 2019;9:2135-2151. [PMID: 31048400 PMCID: PMC6643873 DOI: 10.1534/g3.119.400043] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Accepted: 04/30/2019] [Indexed: 01/01/2023]
13
Havird JC, Forsythe ES, Williams AM, Werren JH, Dowling DK, Sloan DB. Selfish Mitonuclear Conflict. Curr Biol 2019;29:R496-R511. [PMID: 31163164 PMCID: PMC6615485 DOI: 10.1016/j.cub.2019.03.020] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
14
Katju V, Bergthorsson U. Old Trade, New Tricks: Insights into the Spontaneous Mutation Process from the Partnering of Classical Mutation Accumulation Experiments with High-Throughput Genomic Approaches. Genome Biol Evol 2019;11:136-165. [PMID: 30476040 PMCID: PMC6330053 DOI: 10.1093/gbe/evy252] [Citation(s) in RCA: 70] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/22/2018] [Indexed: 12/17/2022]  Open
15
Jorge F, Perera A, Poulin R, Roca V, Carretero MA. Getting there and around: Host range oscillations during colonization of the Canary Islands by the parasitic nematode Spauligodon. Mol Ecol 2018;27:533-549. [DOI: 10.1111/mec.14458] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Revised: 11/19/2017] [Accepted: 11/20/2017] [Indexed: 11/29/2022]
16
Subbotin SA, Toumi F, Elekçioğlu IH, Waeyenberge L, Tanha Maafi Z. DNA barcoding, phylogeny and phylogeography of the cyst nematode species of the Avenae group from the genus Heterodera (Tylenchida: Heteroderidae). NEMATOLOGY 2018. [DOI: 10.1163/15685411-00003170] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
17
Konrad A, Thompson O, Waterston RH, Moerman DG, Keightley PD, Bergthorsson U, Katju V. Mitochondrial Mutation Rate, Spectrum and Heteroplasmy in Caenorhabditis elegans Spontaneous Mutation Accumulation Lines of Differing Population Size. Mol Biol Evol 2017;34:1319-1334. [PMID: 28087770 DOI: 10.1093/molbev/msx051] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
18
Guo W, Grewe F, Fan W, Young GJ, Knoop V, Palmer JD, Mower JP. GinkgoandWelwitschiaMitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution. Mol Biol Evol 2016;33:1448-60. [DOI: 10.1093/molbev/msw024] [Citation(s) in RCA: 96] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
19
Ness RW, Kraemer SA, Colegrave N, Keightley PD. Direct Estimate of the Spontaneous Mutation Rate Uncovers the Effects of Drift and Recombination in theChlamydomonas reinhardtiiPlastid Genome. Mol Biol Evol 2015;33:800-8. [DOI: 10.1093/molbev/msv272] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
20
Chang CC, Rodriguez J, Ross J. Mitochondrial-Nuclear Epistasis Impacts Fitness and Mitochondrial Physiology of Interpopulation Caenorhabditis briggsae Hybrids. G3 (BETHESDA, MD.) 2015;6:209-19. [PMID: 26585825 PMCID: PMC4704720 DOI: 10.1534/g3.115.022970] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/22/2015] [Accepted: 11/16/2015] [Indexed: 12/18/2022]
21
Bundus JD, Alaei R, Cutter AD. Gametic selection, developmental trajectories, and extrinsic heterogeneity in Haldane's rule. Evolution 2015;69:2005-17. [PMID: 26102479 DOI: 10.1111/evo.12708] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2015] [Accepted: 06/01/2015] [Indexed: 12/31/2022]
22
Phillips WS, Coleman-Hulbert AL, Weiss ES, Howe DK, Ping S, Wernick RI, Estes S, Denver DR. Selfish Mitochondrial DNA Proliferates and Diversifies in Small, but not Large, Experimental Populations of Caenorhabditis briggsae. Genome Biol Evol 2015;7:2023-37. [PMID: 26108490 PMCID: PMC4524483 DOI: 10.1093/gbe/evv116] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
23
Fierst JL, Willis JH, Thomas CG, Wang W, Reynolds RM, Ahearne TE, Cutter AD, Phillips PC. Reproductive Mode and the Evolution of Genome Size and Structure in Caenorhabditis Nematodes. PLoS Genet 2015;11:e1005323. [PMID: 26114425 PMCID: PMC4482642 DOI: 10.1371/journal.pgen.1005323] [Citation(s) in RCA: 82] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2014] [Accepted: 05/31/2015] [Indexed: 11/18/2022]  Open
24
Opposing forces of A/T-biased mutations and G/C-biased gene conversions shape the genome of the nematode Pristionchus pacificus. Genetics 2014;196:1145-52. [PMID: 24414549 DOI: 10.1534/genetics.113.159863] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
25
Sommer RJ, McGaughran A. The nematode Pristionchus pacificus as a model system for integrative studies in evolutionary biology. Mol Ecol 2013;22:2380-93. [PMID: 23530614 DOI: 10.1111/mec.12286] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2012] [Revised: 01/30/2013] [Accepted: 01/31/2013] [Indexed: 01/06/2023]
26
Hicks KA, Denver DR, Estes S. Natural variation in Caenorhabditis briggsae mitochondrial form and function suggests a novel model of organelle dynamics. Mitochondrion 2012;13:44-51. [PMID: 23269324 DOI: 10.1016/j.mito.2012.12.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2012] [Revised: 12/07/2012] [Accepted: 12/18/2012] [Indexed: 01/28/2023]
27
Mitochondrial genome evolution in a single protoploid yeast species. G3-GENES GENOMES GENETICS 2012;2:1103-11. [PMID: 22973548 PMCID: PMC3429925 DOI: 10.1534/g3.112.003152] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/22/2012] [Accepted: 07/09/2012] [Indexed: 12/26/2022]
28
Hicks KA, Howe DK, Leung A, Denver DR, Estes S. In vivo quantification reveals extensive natural variation in mitochondrial form and function in Caenorhabditis briggsae. PLoS One 2012;7:e43837. [PMID: 22952781 PMCID: PMC3429487 DOI: 10.1371/journal.pone.0043837] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2012] [Accepted: 07/30/2012] [Indexed: 12/18/2022]  Open
29
Selfish little circles: transmission bias and evolution of large deletion-bearing mitochondrial DNA in Caenorhabditis briggsae nematodes. PLoS One 2012;7:e41433. [PMID: 22859984 PMCID: PMC3409194 DOI: 10.1371/journal.pone.0041433] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2012] [Accepted: 06/25/2012] [Indexed: 01/19/2023]  Open
30
Denver DR, Wilhelm LJ, Howe DK, Gafner K, Dolan PC, Baer CF. Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes. Genome Biol Evol 2012;4:513-22. [PMID: 22436997 PMCID: PMC3342874 DOI: 10.1093/gbe/evs028] [Citation(s) in RCA: 91] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
31
Xu S, Schaack S, Seyfert A, Choi E, Lynch M, Cristescu ME. High mutation rates in the mitochondrial genomes of Daphnia pulex. Mol Biol Evol 2011;29:763-9. [PMID: 21998274 DOI: 10.1093/molbev/msr243] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
32
Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination. PLoS Genet 2011;7:e1002174. [PMID: 21779179 PMCID: PMC3136444 DOI: 10.1371/journal.pgen.1002174] [Citation(s) in RCA: 96] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2010] [Accepted: 05/23/2011] [Indexed: 12/16/2022]  Open
33
Molnar RI, Bartelmes G, Dinkelacker I, Witte H, Sommer RJ. Mutation Rates and Intraspecific Divergence of the Mitochondrial Genome of Pristionchus pacificus. Mol Biol Evol 2011;28:2317-26. [DOI: 10.1093/molbev/msr057] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
34
Estes S, Coleman-Hulbert AL, Hicks KA, de Haan G, Martha SR, Knapp JB, Smith SW, Stein KC, Denver DR. Natural variation in life history and aging phenotypes is associated with mitochondrial DNA deletion frequency in Caenorhabditis briggsae. BMC Evol Biol 2011;11:11. [PMID: 21226948 PMCID: PMC3032685 DOI: 10.1186/1471-2148-11-11] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2010] [Accepted: 01/12/2011] [Indexed: 12/20/2022]  Open
35
Ho SYW, Lanfear R. Mito-communications. MITOCHONDRIAL DNA 2010;21:147-148. [PMID: 20958221 DOI: 10.3109/19401736.2010.508091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
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