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Peterman DJ, Byron ML. Encoding spatiotemporal asymmetry in artificial cilia with a ctenophore-inspired soft-robotic platform. BIOINSPIRATION & BIOMIMETICS 2024; 19:066002. [PMID: 39255824 DOI: 10.1088/1748-3190/ad791c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Accepted: 09/10/2024] [Indexed: 09/12/2024]
Abstract
A remarkable variety of organisms use metachronal coordination (i.e. numerous neighboring appendages beating sequentially with a fixed phase lag) to swim or pump fluid. This coordination strategy is used by microorganisms to break symmetry at small scales where viscous effects dominate and flow is time-reversible. Some larger organisms use this swimming strategy at intermediate scales, where viscosity and inertia both play important roles. However, the role of individual propulsor kinematics-especially across hydrodynamic scales-is not well-understood, though the details of propulsor motion can be crucial for the efficient generation of flow. To investigate this behavior, we developed a new soft robotic platform using magnetoactive silicone elastomers to mimic the metachronally coordinated propulsors found in swimming organisms. Furthermore, we present a method to passively encode spatially asymmetric beating patterns in our artificial propulsors. We investigated the kinematics and hydrodynamics of three propulsor types, with varying degrees of asymmetry, using Particle Image Velocimetry and high-speed videography. We find that asymmetric beating patterns can move considerably more fluid relative to symmetric beating at the same frequency and phase lag, and that asymmetry can be passively encoded into propulsors via the interplay between elastic and magnetic torques. Our results demonstrate that nuanced differences in propulsor kinematics can substantially impact fluid pumping performance. Our soft robotic platform also provides an avenue to explore metachronal coordination at the meso-scale, which in turn can inform the design of future bioinspired pumping devices and swimming robots.
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Affiliation(s)
- David J Peterman
- Department of Mechanical Engineering, Penn State University, University Park, PA 16802, United States of America
| | - Margaret L Byron
- Department of Mechanical Engineering, Penn State University, University Park, PA 16802, United States of America
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Burns JA, Becker KP, Casagrande D, Daniels J, Roberts P, Orenstein E, Vogt DM, Teoh ZE, Wood R, Yin AH, Genot B, Gruber DF, Katija K, Wood RJ, Phillips BT. An in situ digital synthesis strategy for the discovery and description of ocean life. SCIENCE ADVANCES 2024; 10:eadj4960. [PMID: 38232174 DOI: 10.1126/sciadv.adj4960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 12/19/2023] [Indexed: 01/19/2024]
Abstract
Revolutionary advancements in underwater imaging, robotics, and genomic sequencing have reshaped marine exploration. We present and demonstrate an interdisciplinary approach that uses emerging quantitative imaging technologies, an innovative robotic encapsulation system with in situ RNA preservation and next-generation genomic sequencing to gain comprehensive biological, biophysical, and genomic data from deep-sea organisms. The synthesis of these data provides rich morphological and genetic information for species description, surpassing traditional passive observation methods and preserved specimens, particularly for gelatinous zooplankton. Our approach enhances our ability to study delicate mid-water animals, improving research in the world's oceans.
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Affiliation(s)
- John A Burns
- Bigelow Laboratory for Ocean Sciences, East Boothbay, ME 04544, USA
| | - Kaitlyn P Becker
- School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA
| | - David Casagrande
- Department of Ocean Engineering, University of Rhode Island, 215 South Ferry Road, Narragansett, RI 02882, USA
| | - Joost Daniels
- Monterey Bay Aquarium Research Institute, Research and Development, Moss Landing, CA 95039, USA
| | - Paul Roberts
- Monterey Bay Aquarium Research Institute, Research and Development, Moss Landing, CA 95039, USA
| | - Eric Orenstein
- Monterey Bay Aquarium Research Institute, Research and Development, Moss Landing, CA 95039, USA
| | - Daniel M Vogt
- School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA
| | | | - Ryan Wood
- PA Consulting, Concord, MA 01742, USA
| | - Alexander H Yin
- Department of Ocean Engineering, University of Rhode Island, 215 South Ferry Road, Narragansett, RI 02882, USA
| | - Baptiste Genot
- Bigelow Laboratory for Ocean Sciences, East Boothbay, ME 04544, USA
| | - David F Gruber
- Department of Natural Sciences, Baruch College, City University of New York, New York, NY 10010, USA
| | - Kakani Katija
- Monterey Bay Aquarium Research Institute, Research and Development, Moss Landing, CA 95039, USA
| | - Robert J Wood
- School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA
| | - Brennan T Phillips
- Department of Ocean Engineering, University of Rhode Island, 215 South Ferry Road, Narragansett, RI 02882, USA
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Herrera-Amaya A, Byron ML. Omnidirectional propulsion in a metachronal swimmer. PLoS Comput Biol 2023; 19:e1010891. [PMID: 37976322 PMCID: PMC10697607 DOI: 10.1371/journal.pcbi.1010891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Revised: 12/05/2023] [Accepted: 10/11/2023] [Indexed: 11/19/2023] Open
Abstract
Aquatic organisms often employ maneuverable and agile swimming behavior to escape from predators, find prey, or navigate through complex environments. Many of these organisms use metachronally coordinated appendages to execute complex maneuvers. However, though metachrony is used across body sizes ranging from microns to tens of centimeters, it is understudied compared to the swimming of fish, cetaceans, and other groups. In particular, metachronal coordination and control of multiple appendages for three-dimensional maneuvering is not fully understood. To explore the maneuvering capabilities of metachronal swimming, we combine 3D high-speed videography of freely swimming ctenophores (Bolinopsis vitrea) with reduced-order mathematical modeling. Experimental results show that ctenophores can quickly reorient, and perform tight turns while maintaining forward swimming speeds close to 70% of their observed maximum-performance comparable to or exceeding that of many vertebrates with more complex locomotor systems. We use a reduced-order model to investigate turning performance across a range of beat frequencies and appendage control strategies, and reveal that ctenophores are capable of near-omnidirectional turning. Based on both recorded and modeled swimming trajectories, we conclude that the ctenophore body plan enables a high degree of maneuverability and agility, and may be a useful starting point for future bioinspired aquatic vehicles.
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Affiliation(s)
- Adrian Herrera-Amaya
- Department of Mechanical Engineering, Penn State University, University Park, Pennsylvania, United States of America
| | - Margaret L. Byron
- Department of Mechanical Engineering, Penn State University, University Park, Pennsylvania, United States of America
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Amei K, Dobashi R, Kitamura M, Yamaguchi A. Diel, seasonal and vertical changes in the abundance, biomass and community structure of pelagic polychaetes at the subtropical station S1 in the western North Pacific: comparison with the results from the subarctic station K2. JOURNAL OF PLANKTON RESEARCH 2023; 45:661-676. [PMID: 37781210 PMCID: PMC10533370 DOI: 10.1093/plankt/fbad023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Accepted: 05/07/2023] [Indexed: 10/03/2023]
Abstract
Information on pelagic polychaete community structure in the western North Pacific is available for the subarctic region (Station K2) but not for the subtropical region. Hence, we analyzed day-night vertically stratified samples collected in eight layers within the first 1000 m of the water column during four seasons in 1 year, using the same sampling method as St. K2, at the subtropical region (Station S1). At St. S1, 27 species of pelagic polychaetes belonging to 13 genera and six families were identified. The annual mean abundance was 35.0 ind. 1000 m-3 and the biomass was 17.3 mg WW 1000 m-3. At St. S1, the numbers of genera and species were higher and the annual mean abundance and biomasses were much lower than St. K2. The pelagic polychaetes often peaked in the mesopelagic layer at St. K2, with the carnivores and particle feeders peaking in the epipelagic and mesopelagic layers, respectively. At St.S1, the carnivorous species predominated throughout the entire water column, and were most abundant in the epipelagic layer. Thus, In the western Pacific Ocean, the subarctic pelagic polychaete community structure changed vertically with feeding ecology. On the other hand, the subtropical community may be adapted to conditions of high irradiance and light transmission.
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Affiliation(s)
- Kanako Amei
- Faculty/Graduate School of Fisheries Sciences, Hokkaido University, 3-1-1 Minato-cho, Hakodate, Hokkaido 041−8611, Japan
| | - Ryo Dobashi
- Department of Oceanography, University of Hawai‘i at Mānoa, 1000 Pope Road, Honolulu, HI, USA
| | - Minoru Kitamura
- Research Institute for Global Change, Japan Agency for Marine-Earth Science and Technology, 2−15 Natsushima-cho, Yokosuka, Kanagawa 237−0061, Japan
| | - Atsushi Yamaguchi
- Faculty/Graduate School of Fisheries Sciences, Hokkaido University, 3-1-1 Minato-cho, Hakodate, Hokkaido 041−8611, Japan
- Arctic Research Center, Hokkaido University, Kita-21 Nishi-11 Kita-ku, Sapporo, Hokkaido 001−0021, Japan
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Purschke G, Helm C. Development and structure of the anterior nervous system and sense organs in the holopelagic annelid Tomopteris spp. (Phyllodocida, Errantia). ORG DIVERS EVOL 2023. [DOI: 10.1007/s13127-023-00603-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
Abstract
AbstractTomopteridae are transparent, predatory Annelida inhabiting pelagic ocean zones. Despite being well-known for their fast metachronal swimming and species-specific bioluminescence, our knowledge of morphological adaptations in these fascinating holopelagic worms remains extremely limited. In particular, the evolutionary scenarios and adaptive changes related to the transition from putative benthic ancestors to recent free-swimming groups remain poorly investigated and understood. Therefore, we investigated different taxa and developmental stages within the holopelagic Tomopteridae. We used a comparative morphological approach, including a range of microscopic methods, in our investigations focused on the anterior nervous system and prominent sensory structures, such as nuchal organs and tentacular cirri, in early developmental and adult stages of four tomopterid species. Our data show that Tomopteridae undergo heterochronic, lecithotrophic development with early visibility of adult-like features, which is consistent with earlier investigations. Furthermore, our ultrastructural examinations of the tomopterid nuchal organ highlight the conservativism in the fine structure and development of this prominent polychaete chemosensory organ. Nevertheless, our data indicate ultrastructural differences, such as an extraordinary number of supporting cell types and a bipartite olfactory chamber, potentially related to their pelagic lifestyle. In contrast to previous assumptions, it is shown that the supporting structures in the cirrus-like appendages of the first chaetiger contain prominent intracellular skeletal elements rather than annelid chaetae. These findings highlight the need for further investigations to understand Annelida’s immense morphological diversity of organ systems. Furthermore, our data demonstrate the necessity of functional analyses to understand Annelida’s adaptive radiation of sensory and neuronal structures.
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Ruszczyk M, Webster DR, Yen J. Trends in Stroke Kinematics, Reynolds Number, and Swimming Mode in Shrimp-Like Organisms. Integr Comp Biol 2022; 62:icac067. [PMID: 35662323 DOI: 10.1093/icb/icac067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Metachronal propulsion is commonly seen in organisms with the caridoid facies body plan, i.e. shrimp-like organisms, as they beat their pleopods in an adlocomotory sequence. These organisms exist across length scales ranging several orders of Reynolds number magnitude, from 10 to 104, during locomotion. Further, by altering their stroke kinematics, these organisms achieve three distinct swimming modes. To better understand the relationship between Reynolds number, stroke kinematics, and resulting swimming mode, Euphausia pacifica stroke kinematics were quantified using high-speed digital recordings and compared to the results for the larger E. superba. Euphausia pacifica consistently operate with a greater beat frequency and smaller stroke amplitude than E. superba for each swimming mode, suggesting that length scale may affect the kinematics needed to achieve similar swimming modes. To expand on this observation, these euphausiid data are used in combination with previously-published stroke kinematics from mysids and stomatopods to identify broad trends across swimming mode and length scale in metachrony. Principal component analysis (PCA) reveals trends in stroke kinematics and Reynolds number as well as the variation among taxonomic order. Overall, larger beat frequencies, stroke amplitudes, between-cycle phase lags, and Reynolds numbers are more representative of the fast forward swimming mode compared to the slower hovering mode. Additionally, each species has a unique combination of kinematics that result in metachrony, indicating that there are other factors, perhaps morphological, which affect the overall metachronal characteristics of an organism. Finally, uniform phase lag, in which the timing between power strokes of all pleopods is equal, in 5-paddle systems is achieved at different Reynolds numbers for different swimming modes, highlighting the importance of taking into consideration stroke kinematics, length scale, and the resulting swimming mode.
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Affiliation(s)
- Melissa Ruszczyk
- Ocean Science and Engineering, Georgia Institute of Technology, Atlanta, GA 30332
| | - Donald R Webster
- Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA 30332
| | - Jeannette Yen
- Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332
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Allentoft-Larsen MC, Gonzalez BC, Daniels J, Katija K, Osborn K, Worsaae K. Muscular adaptations in swimming scale worms (Polynoidae, Annelida). ROYAL SOCIETY OPEN SCIENCE 2021; 8:210541. [PMID: 34659778 PMCID: PMC8511760 DOI: 10.1098/rsos.210541] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Accepted: 09/02/2021] [Indexed: 06/13/2023]
Abstract
Annelids are predominantly found along with the seafloor, but over time have colonized a vast diversity of habitats, such as the water column, where different modes of locomotion are necessary. Yet, little is known about their potential muscular adaptation to the continuous swimming behaviour required in the water column. The musculature and motility were examined for five scale worm species of Polynoidae (Aphroditiformia, Annelida) found in shallow waters, deep sea or caves and which exhibit crawling, occasional swimming or continuous swimming, respectively. Their parapodial musculature was reconstructed using microCT and computational three-dimensional analyses, and the muscular functions were interpreted from video recordings of their locomotion. Since most benthic scale worms are able to swim for short distances using body and parapodial muscle movements, suitable musculature for swimming is already present. Our results indicate that rather than rearrangements or addition of muscles, a shift to a pelagic lifestyle is mainly accompanied by structural loss of muscle bundles and density, as well as elongation of extrinsic dorsal and ventral parapodial muscles. Our study documents clear differences in locomotion and musculature among closely related annelids with different lifestyles as well as points to myoanatomical adaptations for accessing the water column.
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Affiliation(s)
- Marc C. Allentoft-Larsen
- Marine Biological Section, Department of Biology, University of Copenhagen, Universitetsparken 4, Copenhagen 2100-DK, Denmark
| | - Brett C. Gonzalez
- Smithsonian National Museum of Natural History, Smithsonian Institution, P.O. Box 37012, Washington, DC 20013-7012, USA
| | - Joost Daniels
- Monterey Bay Aquarium Research Institute, 7700 Sandholdt Road, Moss Landing, CA 95039, USA
| | - Kakani Katija
- Monterey Bay Aquarium Research Institute, 7700 Sandholdt Road, Moss Landing, CA 95039, USA
| | - Karen Osborn
- Smithsonian National Museum of Natural History, Smithsonian Institution, P.O. Box 37012, Washington, DC 20013-7012, USA
- Monterey Bay Aquarium Research Institute, 7700 Sandholdt Road, Moss Landing, CA 95039, USA
| | - Katrine Worsaae
- Marine Biological Section, Department of Biology, University of Copenhagen, Universitetsparken 4, Copenhagen 2100-DK, Denmark
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Byron M, Santhanakrishnan A, Murphy D. Metachronal Coordination of Multiple Appendages for Swimming and Pumping. Integr Comp Biol 2021; 61:1561-1566. [PMID: 34410387 DOI: 10.1093/icb/icab181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 05/14/2021] [Accepted: 08/17/2021] [Indexed: 11/13/2022] Open
Abstract
As a strategy for creating fluid flow, metachronal motion is widespread across sizes and species, including a broad array of morphologies, length scales, and coordination patterns. Because of this great diversity, it has not generally been viewed holistically: the study of metachrony for swimming and pumping has historically been taxonomically siloed, in spite of many commonalities between seemingly disparate organisms. The goal of the present symposium was to bring together individuals from different backgrounds, all of whom have made substantial individual contributions to our understanding of the fluid dynamics of metachronal motion. Because these problems share a common physical-mathematical basis, intentionally connecting this community is likely to yield future collaborations and significant scientific discovery. Here, we briefly introduce the concept of metachronal motion, present the benefits of creating a research network based on the common aspects of metachrony across biological systems, and outline the contributions to the symposium.
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Affiliation(s)
| | | | - David Murphy
- University of South Florida, Mechanical Engineering
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Byron ML, Murphy DW, Katija K, Hoover AP, Daniels J, Garayev K, Takagi D, Kanso E, Gemmell BJ, Ruszczyk M, Santhanakrishnan A. Metachronal motion across scales: current challenges and future directions. Integr Comp Biol 2021; 61:1674-1688. [PMID: 34048537 DOI: 10.1093/icb/icab105] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Metachronal motion is used across a wide range of organisms for a diverse set of functions. However, despite its ubiquity, analysis of this behavior has been difficult to generalize across systems. Here we provide an overview of known commonalities and differences between systems that use metachrony to generate fluid flow. We also discuss strategies for standardizing terminology and defining future investigative directions that are analogous to other established subfields of biomechanics. Lastly, we outline key challenges that are common to many metachronal systems, opportunities that have arisen due to the advent of new technology (both experimental and computational), and next steps for community development and collaboration across the nascent network of metachronal researchers.
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Affiliation(s)
| | - David W Murphy
- University of South Florida, 4202 E. Fowler Ave, Tampa, FL, 33620, USA
| | - Kakani Katija
- Monterey Bay Aquarium Research Institute, 7700 Sandholdt Rd, Moss Landing, CA, 95039, USA
| | | | - Joost Daniels
- Monterey Bay Aquarium Research Institute, 7700 Sandholdt Rd, Moss Landing, CA, 95039, USA
| | - Kuvvat Garayev
- University of South Florida, 4202 E. Fowler Ave, Tampa, FL, 33620, USA
| | - Daisuke Takagi
- University of Hawaii at Manoa, 2500 Campus Rd, Honolulu, HI, 96822
| | - Eva Kanso
- University of Southern California, University Park, Los Angeles, CA, 90007
| | | | - Melissa Ruszczyk
- Georgia Institute of Technology, 310 Ferst Dr, Atlanta, GA, 30332, USA
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Hoover AP. Emergent metachronal waves using tension-driven, fluid-structure interaction models of tomopterid parapodia. Integr Comp Biol 2021; 61:1594-1607. [PMID: 34028537 DOI: 10.1093/icb/icab088] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Metachronal waves are ubiquitous in propulsive and fluid transport systems across many different scales and morphologies in the biological world. Tomopterids are a soft-bodied, holopelagic polychaete that use metachrony with their flexible, gelatinous parapodia to deftly navigate the midwater ocean column that they inhabit. In the following study, we develop a three-dimensional, fluid-structure interaction model of a tomopterid parapodium to explore the emergent metachronal waves formed from the interplay of passive body elasticity, active muscular tension, and hydrodynamic forces. After introducing our model, we examine the effects that varying material properties have on the stroke of an individual parapodium. We then explore the temporal dynamics when multiple parapodia are placed sequentially and how differences in the phase can alter the collective kinematics and resulting flow field.
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Affiliation(s)
- Alexander P Hoover
- The University of Akron, Department of Mathematics, Akron, OH, 44135, USA
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