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Li J, Lou S, Gong J, Liang J, Zhang J, Zhou X, Li J, Wang L, Zhai M, Duan L, Lei B. Coronatine-treated seedlings increase the tolerance of cotton to low-temperature stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 213:108832. [PMID: 38896915 DOI: 10.1016/j.plaphy.2024.108832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 06/04/2024] [Accepted: 06/11/2024] [Indexed: 06/21/2024]
Abstract
Coronatine, an analog of Jasmonic acid (JA), has been shown to enhance crop tolerance to abiotic stresses, including chilling stress. However, the underlying molecular mechanism remains largely unknown. In this study, we investigated the effect of Coronatine on cotton seedlings under low temperature using transcriptomic and metabolomics analysis. Twelve cDNA libraries from cotton seedlings were constructed, and pairwise comparisons revealed a total of 48,322 differentially expressed genes (DEGs). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis identified the involvement of these unigenes in various metabolic pathways, including Starch and sucrose metabolism, Sesquiterpenoid and triterpenoid biosynthesis, Phenylpropanoid biosynthesis, alpha-Linolenic acid metabolism, ABC transporters, and Plant hormone signal transduction. Additionally, substantial accumulations of jasmonates (JAs), abscisic acid and major cell wall metabolites were observed. Transcriptome analysis revealed differential expression of regulatory genes, and qRT-PCR analysis confirmed the expression patterns of 9 selected genes. Co-expression analysis showed that the JA-responsive genes might form a network module with ABA biosynthesis genes or cell wall biosynthesis genes, suggesting the existence of a COR-JA-cellulose and COR-JA-ABA-cellulose regulatory pathway in cotton seedlings. Collectively, our findings uncover new insights into the molecular basis of coronatine--associated cold tolerance in cotton seedlings.
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Affiliation(s)
- Jin Li
- Research Institute of Nuclear Technology and Biotechnology, Xinjiang Academy of Agricultural Sciences/Key Laboratory of Crop Ecophysiology and Farming System in Desert Oasis Ministry of Agriculture, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; Xinjiang Crop Chemical Regulation Engineering Technology Research Center and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; The State Key Laboratory of Genetic Improvement and Germplasm Innovation of Crop Resistance in Arid Desert Regions (Preparation), Xinjiang Key Laboratory of Crop Biotechnology, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China
| | - Shanwei Lou
- Xinjiang Crop Chemical Regulation Engineering Technology Research Center and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; State Key Laboratory of Plant Physiology & Biochemistry, Engineering Research Center of PGR, Ministry of Education & College of Agronomy and Biotechnology, and China Agricultural University, Beijing, 100193, China
| | - Jingyun Gong
- Research Institute of Nuclear Technology and Biotechnology, Xinjiang Academy of Agricultural Sciences/Key Laboratory of Crop Ecophysiology and Farming System in Desert Oasis Ministry of Agriculture, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; Xinjiang Crop Chemical Regulation Engineering Technology Research Center and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; The State Key Laboratory of Genetic Improvement and Germplasm Innovation of Crop Resistance in Arid Desert Regions (Preparation), Xinjiang Key Laboratory of Crop Biotechnology, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China
| | - Jing Liang
- Research Institute of Nuclear Technology and Biotechnology, Xinjiang Academy of Agricultural Sciences/Key Laboratory of Crop Ecophysiology and Farming System in Desert Oasis Ministry of Agriculture, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; Xinjiang Crop Chemical Regulation Engineering Technology Research Center and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; The State Key Laboratory of Genetic Improvement and Germplasm Innovation of Crop Resistance in Arid Desert Regions (Preparation), Xinjiang Key Laboratory of Crop Biotechnology, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China
| | - Jungao Zhang
- Research Institute of Nuclear Technology and Biotechnology, Xinjiang Academy of Agricultural Sciences/Key Laboratory of Crop Ecophysiology and Farming System in Desert Oasis Ministry of Agriculture, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; Xinjiang Crop Chemical Regulation Engineering Technology Research Center and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; The State Key Laboratory of Genetic Improvement and Germplasm Innovation of Crop Resistance in Arid Desert Regions (Preparation), Xinjiang Key Laboratory of Crop Biotechnology, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China
| | - Xiaoyun Zhou
- Research Institute of Nuclear Technology and Biotechnology, Xinjiang Academy of Agricultural Sciences/Key Laboratory of Crop Ecophysiology and Farming System in Desert Oasis Ministry of Agriculture, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; Xinjiang Crop Chemical Regulation Engineering Technology Research Center and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; The State Key Laboratory of Genetic Improvement and Germplasm Innovation of Crop Resistance in Arid Desert Regions (Preparation), Xinjiang Key Laboratory of Crop Biotechnology, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China
| | - Jie Li
- Xinjiang Crop Chemical Regulation Engineering Technology Research Center and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China
| | - Li Wang
- College of Agricultural, Xinjiang Agricultural University, Urumqi, 830091, China
| | - Menghua Zhai
- College of Agricultural, Xinjiang Agricultural University, Urumqi, 830091, China
| | - Liusheng Duan
- State Key Laboratory of Plant Physiology & Biochemistry, Engineering Research Center of PGR, Ministry of Education & College of Agronomy and Biotechnology, and China Agricultural University, Beijing, 100193, China.
| | - Bin Lei
- Research Institute of Nuclear Technology and Biotechnology, Xinjiang Academy of Agricultural Sciences/Key Laboratory of Crop Ecophysiology and Farming System in Desert Oasis Ministry of Agriculture, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; Xinjiang Crop Chemical Regulation Engineering Technology Research Center and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China; The State Key Laboratory of Genetic Improvement and Germplasm Innovation of Crop Resistance in Arid Desert Regions (Preparation), Xinjiang Key Laboratory of Crop Biotechnology, and Xinjiang Uygur Autonomous Region, Urumqi, 830091, China.
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Li Y, Zhu J, Xu J, Zhang X, Xie Z, Li Z. Effect of cold stress on photosynthetic physiological characteristics and molecular mechanism analysis in cold-resistant cotton (ZM36) seedlings. FRONTIERS IN PLANT SCIENCE 2024; 15:1396666. [PMID: 38803600 PMCID: PMC11128660 DOI: 10.3389/fpls.2024.1396666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 04/16/2024] [Indexed: 05/29/2024]
Abstract
Low temperature and cold damage seriously hinder the growth, development, and morphogenesis of cotton seedlings. However, the response mechanism of cotton seedlings under cold stress still lacks research. In this study, transcriptome sequencing, gas exchange parameters, and rapid chlorophyll fluorescence parameters were analyzed in leaves of cold-tolerant upland cotton variety "ZM36" under different temperature stress [25°C (T25, CK), 15°C (T15), 10°C (T10), and 4°C (T4)]. The results showed that the net photosynthetic rate (Pn), stomatal conductance (Gs), transpiration rate (Tr), PSII potential maximum photochemical efficiency (Fv/Fm), and performance index (PIabs) of cotton leaves significantly decreased, and the intercellular CO2 concentration (Ci) and Fo/Fm significantly increased under cold stress. The transcriptome sequencing analysis showed that a total of 13,183 DEGs were involved in the response of cotton seedlings at each temperature point (T25, T15, T10, and T4), mainly involving five metabolic pathways-the phosphatidylinositol signaling system, photosynthesis, photosynthesis antenna protein, carbon fixation in photosynthetic organisms, and carotenoid synthesis. The 1,119 transcription factors were discovered among all the DEGs. These transcription factors involve 59 families, of which 15.8% of genes in the NAC family are upregulated. Through network regulatory analysis, the five candidate genes GhUVR8 (GH_A05G3668), GhPLATZ (GH_A09G2161), GhFAD4-1 (GH_A01G0758), GhNFYA1 (GH_A02G1336), and GhFAD4-2 (GH_D01G0766) were identified in response to cold stress. Furthermore, suppressing the expression level of GhPLATZ by virus-induced gene silencing led to the reduction of low temperature resistance, implying GhPLATZ as a positive regulator of low temperature tolerance. The findings of the study revealed a piece of the complex response mechanism of the cold-tolerant variety "ZM36" to different cold stresses and excavated key candidate genes for low temperature response, which provided support for accelerating the selection and breeding of cotton varieties with low temperature tolerance.
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Affiliation(s)
- Youzhong Li
- College of Agriculture, Shihezi University, Shihezi, Xinjiang, China
- Cotton Research Institute, Xinjiang Academy of Agricultural and Reclamation Science/Xinjiang Production and Construction Group Key Laboratory of Crop Germplasm Enhancement and Gene Resources Utilization, Shihezi, Xinjiang, China
| | - Jincheng Zhu
- College of Agriculture, Shihezi University, Shihezi, Xinjiang, China
- Xinjiang Production and Construction Group Key Laboratory of Crop Germplasm Enhancement and Gene Resources Utilization, Biotechnology Research Institute, Xinjiang Academy of Agricultural and Reclamation Sciences, Shihezi, Xinjiang, China
| | - Jianwei Xu
- College of Agriculture, Shihezi University, Shihezi, Xinjiang, China
| | - Xianliang Zhang
- Western Research Institute, Chinese Academy of Agricultural Sciences (CAAS), Changji, China
| | - Zongming Xie
- Cotton Research Institute, Xinjiang Academy of Agricultural and Reclamation Science/Xinjiang Production and Construction Group Key Laboratory of Crop Germplasm Enhancement and Gene Resources Utilization, Shihezi, Xinjiang, China
| | - Zhibo Li
- College of Agriculture, Shihezi University, Shihezi, Xinjiang, China
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Wang J, Wang X, Wang L, Nazir MF, Fu G, Peng Z, Chen B, Xing A, Zhu M, Ma X, Wang X, Jia Y, Pan Z, Wang L, Xia Y, He S, Du X. Exploring the regulatory role of non-coding RNAs in fiber development and direct regulation of GhKCR2 in the fatty acid metabolic pathway in upland cotton. Int J Biol Macromol 2024; 266:131345. [PMID: 38574935 DOI: 10.1016/j.ijbiomac.2024.131345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 03/31/2024] [Accepted: 04/01/2024] [Indexed: 04/06/2024]
Abstract
Cotton fiber holds immense importance as the primary raw material for the textile industry. Consequently, comprehending the regulatory mechanisms governing fiber development is pivotal for enhancing fiber quality. Our study aimed to construct a regulatory network of competing endogenous RNAs (ceRNAs) and assess the impact of non-coding RNAs on gene expression throughout fiber development. Through whole transcriptome data analysis, we identified differentially expressed genes (DEGs) regulated by non-coding RNA (ncRNA) that were predominantly enriched in phenylpropanoid biosynthesis and the fatty acid elongation pathway. This analysis involved two contrasting phenotypic materials (J02-508 and ZRI015) at five stages of fiber development. Additionally, we conducted a detailed analysis of genes involved in fatty acid elongation, including KCS, KCR, HACD, ECR, and ACOT, to unveil the factors contributing to the variation in fatty acid elongation between J02-508 and ZRI015. Through the integration of histochemical GUS staining, dual luciferase assay experiments, and correlation analysis of expression levels during fiber development stages for lncRNA MSTRG.44818.23 (MST23) and GhKCR2, we elucidated that MST23 positively regulates GhKCR2 expression in the fatty acid elongation pathway. This identification provides valuable insights into the molecular mechanisms underlying fiber development, emphasizing the intricate interplay between non-coding RNAs and protein-coding genes.
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Affiliation(s)
- Jingjing Wang
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Xiaoyang Wang
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Liyuan Wang
- Crop Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Mian Faisal Nazir
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Guoyong Fu
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Zhen Peng
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China; Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou 455001, China
| | - Baojun Chen
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China; Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou 455001, China
| | - Aishuang Xing
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Mengchen Zhu
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Xinli Ma
- Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou 455001, China
| | - Xiuxiu Wang
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Yinhua Jia
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China; Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou 455001, China
| | - Zhaoe Pan
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Liru Wang
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Yingying Xia
- National Supercomputing Center in Zhengzhou, Zhengzhou University, Zhengzhou 455001, China
| | - Shoupu He
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China; Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou 455001, China
| | - Xiongming Du
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China; Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, Zhengzhou University, Zhengzhou 455001, China.
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Liu J, Li L, Xiong Z, Robert CAM, Li B, He S, Chen W, Bi J, Zhai G, Guo S, Zhang H, Li J, Zhou S, Zhang X, Song CP. Trade-offs between the accumulation of cuticular wax and jasmonic acid-mediated herbivory resistance in maize. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2024; 66:143-159. [PMID: 37975264 DOI: 10.1111/jipb.13586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 11/14/2023] [Indexed: 11/19/2023]
Abstract
Plants have evolved complex physical and chemical defense systems that allow them to withstand herbivory infestation. Composed of a complex mixture of very-long-chain fatty acids (VLCFAs) and their derivatives, cuticular wax constitutes the first physical line of defense against herbivores. Here, we report the function of Glossy 8 (ZmGL8), which encodes a 3-ketoacyl reductase belonging to the fatty acid elongase complex, in orchestrating wax production and jasmonic acid (JA)-mediated defenses against herbivores in maize (Zea mays). The mutation of GL8 enhanced chemical defenses by activating the JA-dependent pathway. We observed a trade-off between wax accumulation and JA levels across maize glossy mutants and 24 globally collected maize inbred lines. In addition, we demonstrated that mutants defective in cuticular wax biosynthesis in Arabidopsis thaliana and maize exhibit enhanced chemical defenses. Comprehensive transcriptomic and lipidomic analyses indicated that the gl8 mutant confers chemical resistance to herbivores by remodeling VLCFA-related lipid metabolism and subsequent JA biosynthesis and signaling. These results suggest that VLCFA-related lipid metabolism has a critical role in regulating the trade-offs between cuticular wax and JA-mediated chemical defenses.
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Affiliation(s)
- Jiong Liu
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
| | - Lu Li
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
| | - Zhilong Xiong
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | | | - Baozhu Li
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Shan He
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
| | - Wenjie Chen
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
| | - Jiasheng Bi
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
| | - Guanqing Zhai
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Siyi Guo
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Hui Zhang
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
| | - Jieping Li
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
| | - Shutang Zhou
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Xi Zhang
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Chun-Peng Song
- School of Life Sciences, Henan University, Kaifeng, 475004, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan University, Kaifeng, 475004, China
- Sanya Institute of Henan University, Sanya, 572025, China
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Gong Y, Wang D, Xie H, Zhao Z, Chen Y, Zhang D, Jiao Y, Shi M, Lv P, Sha Q, Yang J, Chu P, Sun Y. Genome-wide identification and expression analysis of the KCS gene family in soybean ( Glycine max) reveal their potential roles in response to abiotic stress. FRONTIERS IN PLANT SCIENCE 2023; 14:1291731. [PMID: 38116151 PMCID: PMC10728876 DOI: 10.3389/fpls.2023.1291731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Accepted: 11/01/2023] [Indexed: 12/21/2023]
Abstract
Very long chain fatty acids (VLCFAs) are fatty acids with chain lengths of 20 or more carbon atoms, which are the building blocks of various lipids that regulate developmental processes and plant stress responses. 3-ketoacyl-CoA synthase encoded by the KCS gene is the key rate-limiting enzyme in VLCFA biosynthesis, but the KCS gene family in soybean (Glycine max) has not been adequately studied thus far. In this study, 31 KCS genes (namely GmKCS1 - GmKCS31) were identified in the soybean genome, which are unevenly distributed on 14 chromosomes. These GmKCS genes could be phylogenetically classified into seven groups. A total of 27 paralogous GmKCS gene pairs were identified with their Ka/Ks ratios indicating that they had undergone purifying selection during soybean genome expansion. Cis-acting element analysis revealed that GmKCS promoters contained multiple hormone- and stress-responsive elements, indicating that GmKCS gene expression levels may be regulated by various developmental and environmental stimuli. Expression profiles derived from RNA-seq data and qRT-PCR experiments indicated that GmKCS genes were diversely expressed in different organs/tissues, and many GmKCS genes were found to be differentially expressed in the leaves under cold, heat, salt, and drought stresses, suggesting their critical role in soybean resistance to abiotic stress. These results provide fundamental information about the soybean KCS genes and will aid in their further functional elucidation and exploitation.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | - Pengfei Chu
- School of Agricultural Science and Engineering, Liaocheng University, Liaocheng, China
| | - Yongwang Sun
- School of Agricultural Science and Engineering, Liaocheng University, Liaocheng, China
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Yang Z, Tan P, Huang Z, Sun Z, Liu Z, Liu L, Zeng C, Tong J, Yan M. Metabolic profiles in the xylem sap of Brassica juncea exposed to cadmium. PHYSIOLOGIA PLANTARUM 2023; 175:e13886. [PMID: 36862032 DOI: 10.1111/ppl.13886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Accepted: 02/17/2023] [Indexed: 06/18/2023]
Abstract
Metabolic profiles in xylem sap are considered a fundamental mechanism for Cadmium (Cd) detoxification in plants. However, the metabolic mechanism of Brassica juncea xylem sap in response to Cd is still unclear. Here, we investigated the effects on the metabolomics of B. juncea xylem sap treated with Cd at different times by utilizing a nontargeted liquid chromatography-mass spectrometry (LC-MS)-based metabolomics method for further elucidating the response mechanism of Cd exposure. The findings indicated that 48 h and 7 days Cd exposure caused significant differences in metabolic profiles of the B. juncea xylem sap. Those differential metabolites are primarily involved in amino acids, organic acids, lipids, and carbohydrates, and most of them were downregulated, which played essential roles in response to Cd stress. Furthermore, B. juncea xylem sap resisted 48-h Cd exposure via regulation of glycerophospholipid metabolism, carbon metabolism, aminoacyl-tRNA biosynthesis, glyoxylate and dicarboxylate metabolism, linoleic acid metabolism, C5-branched dibasic acid metabolism, alpha-linolenic acid metabolism, cyanoamino acid metabolism, ABC transporters, biosynthesis of amino acids, and pyrimidine metabolism; whereas alpha-linolenic acid metabolism, glycerophospholipid metabolism, photosynthesis, and oxidative phosphorylation were regulated for resisting 7-day Cd exposure.
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Affiliation(s)
- Zhen Yang
- Hunan Provincial Key Laboratory of Forestry Biotechnology, College of Life Science and Technology, Central South University of Forestry and Technology, Changsha, China
- Hunan Provincial Base for Scientific and Technological Innovation Cooperation on Forest Resource Biotechnology, Changsha, China
| | - Piaopiao Tan
- Hunan Provincial Key Laboratory of Forestry Biotechnology, College of Life Science and Technology, Central South University of Forestry and Technology, Changsha, China
- Hunan Provincial Base for Scientific and Technological Innovation Cooperation on Forest Resource Biotechnology, Changsha, China
| | - Zhihao Huang
- Hunan Provincial Key Laboratory of Forestry Biotechnology, College of Life Science and Technology, Central South University of Forestry and Technology, Changsha, China
- Hunan Provincial Base for Scientific and Technological Innovation Cooperation on Forest Resource Biotechnology, Changsha, China
| | - Zhenzhen Sun
- Hunan Provincial Key Laboratory of Forestry Biotechnology, College of Life Science and Technology, Central South University of Forestry and Technology, Changsha, China
- Hunan Provincial Base for Scientific and Technological Innovation Cooperation on Forest Resource Biotechnology, Changsha, China
| | - Zhixiang Liu
- Hunan Provincial Key Laboratory of Forestry Biotechnology, College of Life Science and Technology, Central South University of Forestry and Technology, Changsha, China
- Hunan Provincial Base for Scientific and Technological Innovation Cooperation on Forest Resource Biotechnology, Changsha, China
| | - Lili Liu
- College of Life Sciences, Hunan Key Laboratory of Economic Crops Genetic Improvement and Integrated Utilization, Hunan University of Science and Technology, Xiangtan, China
| | - Chaozhen Zeng
- Hunan Provincial Key Laboratory of Forestry Biotechnology, College of Life Science and Technology, Central South University of Forestry and Technology, Changsha, China
- Hunan Provincial Base for Scientific and Technological Innovation Cooperation on Forest Resource Biotechnology, Changsha, China
| | - Jianhua Tong
- Hunan Provincial Key Laboratory of Phytohormones and Growth Development, College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China
| | - Mingli Yan
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha, China
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Li W, Mi X, Jin X, Zhang D, Zhu G, Shang X, Zhang D, Guo W. Thiamine functions as a key activator for modulating plant health and broad-spectrum tolerance in cotton. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 111:374-390. [PMID: 35506325 DOI: 10.1111/tpj.15793] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2021] [Revised: 04/23/2022] [Accepted: 05/01/2022] [Indexed: 06/14/2023]
Abstract
Global climate changes cause an increase of abiotic and biotic stresses that tremendously threaten the world's crop security. However, studies on broad-spectrum response pathways involved in biotic and abiotic stresses are relatively rare. Here, by comparing the time-dependent transcriptional changes and co-expression analysis of cotton (Gossypium hirsutum) root tissues under abiotic and biotic stress conditions, we discovered the common stress-responsive genes and stress metabolism pathways under different stresses, which included the circadian rhythm, thiamine and galactose metabolism, carotenoid, phenylpropanoid, flavonoid, and zeatin biosynthesis, and the mitogen-activated protein kinase signaling pathway. We found that thiamine metabolism was an important intersection between abiotic and biotic stresses; the key thiamine synthesis genes, GhTHIC and GhTHI1, were highly induced at the early stage of stresses. We confirmed that thiamine was crucial and necessary for cotton growth and development, and its deficiency could be recovered by exogenous thiamine supplement. Furthermore, we revealed that exogenous thiamine enhanced stress tolerance in cotton via increasing calcium signal transduction and activating downstream stress-responsive genes. Overall, our studies demonstrated that thiamine played a crucial role in the tradeoff between plant health and stress resistance. The thiamine deficiency caused by stresses could transiently induce upregulation of thiamine biosynthetic genes in vivo, while it could be totally salvaged by exogenous thiamine application, which could significantly improve cotton broad-spectrum stress tolerance and enhance plant growth and development.
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Affiliation(s)
- Weixi Li
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing, 210095, China
| | - Xinyue Mi
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing, 210095, China
| | - Xuanxiang Jin
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing, 210095, China
| | - Daiwei Zhang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing, 210095, China
| | - Guozhong Zhu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing, 210095, China
| | - Xiaoguang Shang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing, 210095, China
| | - Dayong Zhang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing, 210095, China
| | - Wangzhen Guo
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing, 210095, China
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Rizwan HM, Shaozhong F, Li X, Bilal Arshad M, Yousef AF, Chenglong Y, Shi M, Jaber MYM, Anwar M, Hu SY, Yang Q, Sun K, Ahmed MAA, Min Z, Oelmüller R, Zhimin L, Chen F. Genome-Wide Identification and Expression Profiling of KCS Gene Family in Passion Fruit ( Passiflora edulis) Under Fusarium kyushuense and Drought Stress Conditions. FRONTIERS IN PLANT SCIENCE 2022; 13:872263. [PMID: 35548275 PMCID: PMC9081883 DOI: 10.3389/fpls.2022.872263] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Accepted: 03/03/2022] [Indexed: 05/02/2023]
Abstract
Plant and fruit surfaces are covered with cuticle wax and provide a protective barrier against biotic and abiotic stresses. Cuticle wax consists of very-long-chain fatty acids (VLCFAs) and their derivatives. β-Ketoacyl-CoA synthase (KCS) is a key enzyme in the synthesis of VLCFAs and provides a precursor for the synthesis of cuticle wax, but the KCS gene family was yet to be reported in the passion fruit (Passiflora edulis). In this study, thirty-two KCS genes were identified in the passion fruit genome and phylogenetically grouped as KCS1-like, FAE1-like, FDH-like, and CER6-like. Furthermore, thirty-one PeKCS genes were positioned on seven chromosomes, while one PeKCS was localized to the unassembled genomic scaffold. The cis-element analysis provides insight into the possible role of PeKCS genes in phytohormones and stress responses. Syntenic analysis revealed that gene duplication played a crucial role in the expansion of the PeKCS gene family and underwent a strong purifying selection. All PeKCS proteins shared similar 3D structures, and a protein-protein interaction network was predicted with known Arabidopsis proteins. There were twenty putative ped-miRNAs which were also predicted that belong to nine families targeting thirteen PeKCS genes. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation results were highly associated with fatty acid synthase and elongase activity, lipid metabolism, stress responses, and plant-pathogen interaction. The highly enriched transcription factors (TFs) including ERF, MYB, Dof, C2H2, TCP, LBD, NAC, and bHLH were predicted in PeKCS genes. qRT-PCR expression analysis revealed that most PeKCS genes were highly upregulated in leaves including PeKCS2, PeKCS4, PeKCS8, PeKCS13, and PeKCS9 but not in stem and roots tissues under drought stress conditions compared with controls. Notably, most PeKCS genes were upregulated at 9th dpi under Fusarium kyushuense biotic stress condition compared to controls. This study provides a basis for further understanding the functions of KCS genes, improving wax and VLCFA biosynthesis, and improvement of passion fruit resistance.
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Affiliation(s)
| | - Fang Shaozhong
- Institute of Biotechnology, Fujian Academy of Agricultural Sciences, Fuzhou, China
| | - Xiaoting Li
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Muhammad Bilal Arshad
- Department of Plant Breeding and Genetics, College of Agriculture, University of Sargodha, Sargodha, Pakistan
| | - Ahmed Fathy Yousef
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, China
- Department of Horticulture, College of Agriculture, University of Al-Azhar, Assiut, Egypt
| | - Yang Chenglong
- Institute of Biotechnology, Fujian Academy of Agricultural Sciences, Fuzhou, China
| | - Meng Shi
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Mohammed Y. M. Jaber
- Department of Plant Production and Protection, Faculty of Agriculture and Veterinary Medicine, An-Najah National University, Nablus, Palestine
| | - Muhammad Anwar
- Guangdong Technology Research Center for Marine Algal Bioengineering, Guangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China
| | - Shuai-Ya Hu
- College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agriculture University, Nanjing, China
| | - Qiang Yang
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Kaiwei Sun
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Mohamed A. A. Ahmed
- Plant Production Department (Horticulture-Medicinal and Aromatic Plants), Faculty of Agriculture (Saba Basha), Alexandria University, Alexandria, Egypt
| | - Zheng Min
- Department of Horticulture, Fujian Agricultural Vocational College, Fuzhou, China
| | - Ralf Oelmüller
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, China
- Matthias Schleiden Institute, Plant Physiology, Friedrich-Schiller-University Jena, Jena, Germany
| | - Lin Zhimin
- Institute of Biotechnology, Fujian Academy of Agricultural Sciences, Fuzhou, China
- *Correspondence: Lin Zhimin,
| | - Faxing Chen
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, China
- Faxing Chen,
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Wang Y, Wang Y, Meng Z, Wei Y, Du X, Liang C, Zhang R. Elevation of GhDREB1B transcription by a copy number variant significantly improves chilling tolerance in cotton. PLANTA 2021; 254:42. [PMID: 34331139 DOI: 10.1007/s00425-021-03686-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 07/13/2021] [Indexed: 06/13/2023]
Abstract
The elevation of transcript levels of GhDREB1B causes the accumulation of osmoregulants and mitigation of reactive oxygen species, which contributes to the enhanced resistance to chilling stress in AiSheng98 cotton. Low temperature is one of the key environmental stresses that impairs cotton growth and restricts fiber productivity. Dehydration responsive element binding (DREB) transcription factors play an important role in cold response in plants by modulating the transcription level of cold-responsive genes to protect the plants from low-temperature stress. Here, we showed that GhDREB1B, a copy number variant in the AiSheng98 (AS98) cotton mutant, significantly improved chilling tolerance in cotton seedlings, while silencing of GhDREB1B made transgenic cotton sensitive to chilling stress in AS98 cotton compared with control plants. Elevated GhDREB1B transcript level activated the expression of major cold-responsive genes. Genome-wide expression profiling by RNA sequencing revealed the upregulation of genes related to fatty acids, lipid proteins, osmoprotection, and anti-oxidative enzymes in AiSheng98. Excessive accumulation of malondialdehyde (MDA) and higher ion leakage rates occurred in wild-type LFH10 plants when compared to those of Aisheng98 during chilling stress, signifying lower chilling tolerance in the wild-type than in Aisheng98. Furthermore, the Aisheng98 mutant under chilling stress accumulated higher levels of free proline and soluble sugar than LFH10 accumulated. These results suggest that GhDREB1B is a positive regulator and its variant can alter the expression patterns of major low-temperature stress-related genes and enhance chilling tolerance in cotton.
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Affiliation(s)
- Yanan Wang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Yuan Wang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Zhigang Meng
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Yunxiao Wei
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Xiongming Du
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China.
| | - Chengzhen Liang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
| | - Rui Zhang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
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Cook R, Lupette J, Benning C. The Role of Chloroplast Membrane Lipid Metabolism in Plant Environmental Responses. Cells 2021; 10:cells10030706. [PMID: 33806748 PMCID: PMC8005216 DOI: 10.3390/cells10030706] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Revised: 03/16/2021] [Accepted: 03/19/2021] [Indexed: 12/30/2022] Open
Abstract
Plants are nonmotile life forms that are constantly exposed to changing environmental conditions during the course of their life cycle. Fluctuations in environmental conditions can be drastic during both day–night and seasonal cycles, as well as in the long term as the climate changes. Plants are naturally adapted to face these environmental challenges, and it has become increasingly apparent that membranes and their lipid composition are an important component of this adaptive response. Plants can remodel their membranes to change the abundance of different lipid classes, and they can release fatty acids that give rise to signaling compounds in response to environmental cues. Chloroplasts harbor the photosynthetic apparatus of plants embedded into one of the most extensive membrane systems found in nature. In part one of this review, we focus on changes in chloroplast membrane lipid class composition in response to environmental changes, and in part two, we will detail chloroplast lipid-derived signals.
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Affiliation(s)
- Ron Cook
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824-1319, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824-1319, USA
| | - Josselin Lupette
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824-1319, USA
| | - Christoph Benning
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824-1319, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824-1319, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI 48824-1319, USA
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