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Coupel-Ledru A, Westgeest AJ, Albasha R, Millan M, Pallas B, Doligez A, Flutre T, Segura V, This P, Torregrosa L, Simonneau T, Pantin F. Clusters of grapevine genes for a burning world. THE NEW PHYTOLOGIST 2024; 242:10-18. [PMID: 38320579 DOI: 10.1111/nph.19540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 12/21/2023] [Indexed: 02/08/2024]
Affiliation(s)
| | | | - Rami Albasha
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
- ITK, 45 Allée Yves Stourdze, F-34830, Clapiers, France
| | - Mathilde Millan
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
| | - Benoît Pallas
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
| | - Agnès Doligez
- AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- UMT Geno-Vigne®, IFV-INRAE-Institut Agro, F-34398, Montpellier, France
| | - Timothée Flutre
- AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- UMT Geno-Vigne®, IFV-INRAE-Institut Agro, F-34398, Montpellier, France
- Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE-Le Moulon, 91190, Gif-sur-Yvette, France
| | - Vincent Segura
- AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- UMT Geno-Vigne®, IFV-INRAE-Institut Agro, F-34398, Montpellier, France
| | - Patrice This
- AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- UMT Geno-Vigne®, IFV-INRAE-Institut Agro, F-34398, Montpellier, France
| | - Laurent Torregrosa
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
- AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
- UMT Geno-Vigne®, IFV-INRAE-Institut Agro, F-34398, Montpellier, France
| | | | - Florent Pantin
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
- Univ Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, F-49000, Angers, France
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2
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Bai Y, Dong Y, Zheng L, Zeng H, Wei Y, Shi H. Cassava phosphatase PP2C1 modulates thermotolerance via fine-tuning dephosphorylation of antioxidant enzymes. PLANT PHYSIOLOGY 2024; 194:2724-2738. [PMID: 38198213 DOI: 10.1093/plphys/kiae009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 11/13/2023] [Accepted: 11/15/2023] [Indexed: 01/12/2024]
Abstract
Global warming is an adverse environmental factor that threatens crop yields and food security. 2C-type protein phosphatases (PP2Cs), as core protein phosphatase components, play important roles in plant hormone signaling to cope with various environmental stresses. However, the function and underlying mechanism of PP2Cs in the heat stress response remain elusive in tropical crops. Here, we report that MePP2C1 negatively regulated thermotolerance in cassava (Manihot esculenta Crantz), accompanied by the modulation of reactive oxygen species (ROS) accumulation and the underlying antioxidant enzyme activities of catalase (CAT) and ascorbate peroxidase (APX). Further investigation found that MePP2C1 directly interacted with and dephosphorylated MeCAT1 and MeAPX2 at serine (S) 112 and S160 residues, respectively. Moreover, in vitro and in vivo assays showed that protein phosphorylation of MeCAT1S112 and MeAPX2S160 was essential for their enzyme activities, and MePP2C1 negatively regulated thermotolerance and redox homeostasis by dephosphorylating MeCAT1S112 and MeAPX2S160. Taken together, this study illustrates the direct relationship between MePP2C1-mediated protein dephosphorylation of MeCAT1 and MeAPX2 and ROS accumulation in thermotolerance to provide insights for adapting to global warming via fine-tuning thermotolerance of the tropical crop cassava.
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Affiliation(s)
- Yujing Bai
- National Key Laboratory for Tropical Crop Breeding, School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, School of Tropical Agriculture and Forestry, Hainan University, Sanya, Hainan Province 572025, China
- Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan Province 572025, China
| | - Yabin Dong
- National Key Laboratory for Tropical Crop Breeding, School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, School of Tropical Agriculture and Forestry, Hainan University, Sanya, Hainan Province 572025, China
- Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan Province 572025, China
| | - Liyan Zheng
- National Key Laboratory for Tropical Crop Breeding, School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, School of Tropical Agriculture and Forestry, Hainan University, Sanya, Hainan Province 572025, China
- Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan Province 572025, China
| | - Hongqiu Zeng
- National Key Laboratory for Tropical Crop Breeding, School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, School of Tropical Agriculture and Forestry, Hainan University, Sanya, Hainan Province 572025, China
- Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan Province 572025, China
| | - Yunxie Wei
- National Key Laboratory for Tropical Crop Breeding, School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, School of Tropical Agriculture and Forestry, Hainan University, Sanya, Hainan Province 572025, China
- Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan Province 572025, China
| | - Haitao Shi
- National Key Laboratory for Tropical Crop Breeding, School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, School of Tropical Agriculture and Forestry, Hainan University, Sanya, Hainan Province 572025, China
- Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan Province 572025, China
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3
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Janni M, Maestri E, Gullì M, Marmiroli M, Marmiroli N. Plant responses to climate change, how global warming may impact on food security: a critical review. FRONTIERS IN PLANT SCIENCE 2024; 14:1297569. [PMID: 38250438 PMCID: PMC10796516 DOI: 10.3389/fpls.2023.1297569] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 12/14/2023] [Indexed: 01/23/2024]
Abstract
Global agricultural production must double by 2050 to meet the demands of an increasing world human population but this challenge is further exacerbated by climate change. Environmental stress, heat, and drought are key drivers in food security and strongly impacts on crop productivity. Moreover, global warming is threatening the survival of many species including those which we rely on for food production, forcing migration of cultivation areas with further impoverishing of the environment and of the genetic variability of crop species with fall out effects on food security. This review considers the relationship of climatic changes and their bearing on sustainability of natural and agricultural ecosystems, as well as the role of omics-technologies, genomics, proteomics, metabolomics, phenomics and ionomics. The use of resource saving technologies such as precision agriculture and new fertilization technologies are discussed with a focus on their use in breeding plants with higher tolerance and adaptability and as mitigation tools for global warming and climate changes. Nevertheless, plants are exposed to multiple stresses. This study lays the basis for the proposition of a novel research paradigm which is referred to a holistic approach and that went beyond the exclusive concept of crop yield, but that included sustainability, socio-economic impacts of production, commercialization, and agroecosystem management.
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Affiliation(s)
- Michela Janni
- Institute of Bioscience and Bioresources (IBBR), National Research Council (CNR), Bari, Italy
- Institute of Materials for Electronics and Magnetism (IMEM), National Research Council (CNR), Parma, Italy
| | - Elena Maestri
- Department of Chemistry, Life Sciences and Environmental Sustainability, Interdepartmental Centers SITEIA.PARMA and CIDEA, University of Parma, Parma, Italy
| | - Mariolina Gullì
- Department of Chemistry, Life Sciences and Environmental Sustainability, Interdepartmental Centers SITEIA.PARMA and CIDEA, University of Parma, Parma, Italy
| | - Marta Marmiroli
- Department of Chemistry, Life Sciences and Environmental Sustainability, Interdepartmental Centers SITEIA.PARMA and CIDEA, University of Parma, Parma, Italy
| | - Nelson Marmiroli
- Consorzio Interuniversitario Nazionale per le Scienze Ambientali (CINSA) Interuniversity Consortium for Environmental Sciences, Parma/Venice, Italy
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4
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Macklin SC, Mariani RO, Young EN, Kish R, Cathline KA, Robertson G, Martin AR. Intraspecific Leaf Trait Variation across and within Five Common Wine Grape Varieties. PLANTS (BASEL, SWITZERLAND) 2022; 11:2792. [PMID: 36297816 PMCID: PMC9611564 DOI: 10.3390/plants11202792] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 10/14/2022] [Accepted: 10/17/2022] [Indexed: 06/16/2023]
Abstract
Variability in traits forming the Leaf Economics Spectrum (LES) among and within crop species plays a key role in governing agroecosystem processes. However, studies evaluating the extent, causes, and consequences of within-species variation in LES traits for some of the world's most common crops remain limited. This study quantified variations in nine leaf traits measured across 90 vines of five common wine grape (Vitis vinifera L.) varieties at two growth stages (post-flowering and veraison). Grape traits in these varieties covary along an intraspecific LES, in patterns similar to those documented in wild plants. Across the five varieties evaluated here, high rates of photosynthesis (A) and leaf nitrogen (N) concentrations were coupled with low leaf mass per area (LMA), whereas the opposite suite of traits defined the "resource-conserving end" of this intraspecific LES in grape. Variety identity was the strongest predictor of leaf physiological (A) and morphological traits (i.e., leaf area and leaf mass), whereas leaf chemical traits and LMA were best explained by growth stage. All five varieties expressed greater resource-conserving trait syndromes (i.e., higher LMA, lower N, and lower Amass) later in the growing season. Traits related to leaf hydraulics, including instantaneous water-use efficiency (WUE), were unrelated to LES and other resource capture traits, and were better explained by spatial location. These results highlight the relative contributions of genetic, developmental, and phenotypic factors in structuring trait variation in the five wine grape varieties evaluated here, and point to a key role of domestication in governing trait relationships in the world's crops.
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Affiliation(s)
- Samantha C. Macklin
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, ON M1C 1A4, Canada
| | - Rachel O. Mariani
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, ON M1C 1A4, Canada
| | - Emily N. Young
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, ON M1C 1A4, Canada
| | - Rosalyn Kish
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, ON M1C 1A4, Canada
| | - Kimberley A. Cathline
- Horticultural & Environmental Sciences Innovation Centre, Niagara College, Niagara-on-the-Lake, ON L0S 1J0, Canada
| | - Gavin Robertson
- Horticultural & Environmental Sciences Innovation Centre, Niagara College, Niagara-on-the-Lake, ON L0S 1J0, Canada
| | - Adam R. Martin
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, ON M1C 1A4, Canada
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5
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Shecori S, Kher MM, Tyagi K, Lerno L, Netzer Y, Lichter A, Ebeler SE, Drori E. A Field Collection of Indigenous Grapevines as a Valuable Repository for Applied Research. PLANTS (BASEL, SWITZERLAND) 2022; 11:2563. [PMID: 36235429 PMCID: PMC9570891 DOI: 10.3390/plants11192563] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 09/20/2022] [Accepted: 09/20/2022] [Indexed: 12/01/2022]
Abstract
The grapevine is an economically important plant, with a historical connection to the development of human culture. Currently, over 6000 accessions are known as individual grapevine varieties, some of which are important to national heritage, valuable for current viticultural practices, and as genetic resources to maintain plasticity under changing climatic conditions, environmental sustainability, and market demands. Recently, the diversity of cultivated grapevines has declined significantly, due to the increased focus of global wine industries on a few major cultivars. Moreover, due to biotic and abiotic stresses, the wild V. vinifera germplasm's genetic diversity has declined, with some varieties on the verge of extinction. Vitis germplasm conservation can be achieved via either in situ (e.g., protected areas) or Ex situ (e.g., field collections, seed banks, and tissue culture collections) methods. This study aims to highlight the importance of Vitis field bank collections. We demonstrate the research done in the Israeli indigenous Vitis vinifera collection. The multi-layer analysis of the varieties enabled the identification of drought stress-resistant varieties, and suggested a mechanism for this resistance through noting the dramatic phenological differences in foliage development between resistant and sensitive varieties. In addition, we show a general characterization of the varieties via major grape characteristics, including bunch and berry shape, as well as their possible utilization based on their aromatic and phenolic profiles.
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Affiliation(s)
- Shani Shecori
- Chemical Engineering Department, Ariel University, Ariel 40700, Israel
| | | | - Kamal Tyagi
- Horticulture Section, SIPS, Cornell University, Ithaca, NY 14853, USA
| | - Larry Lerno
- Department of Viticulture and Enology, University of California, Davis, CA 95616, USA
| | - Yishai Netzer
- Chemical Engineering Department, Ariel University, Ariel 40700, Israel
- Eastern Regional R&D Center, Ariel 40700, Israel
| | - Amnon Lichter
- Department of Postharvest Science, The Volcani Institute, Rishon LeZion 7528809, Israel
| | - Susan E. Ebeler
- Department of Viticulture and Enology, University of California, Davis, CA 95616, USA
| | - Elyashiv Drori
- Chemical Engineering Department, Ariel University, Ariel 40700, Israel
- Eastern Regional R&D Center, Ariel 40700, Israel
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6
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Janni M, Pieruschka R. Plant phenotyping for a sustainable future. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:5085-5088. [PMID: 36056763 DOI: 10.1093/jxb/erac286] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Affiliation(s)
- Michela Janni
- Institute of Materials for Electronics and Magnetism (IMEM), National Research Council (CNR), Parco Area delle Scienze 37/A, 43124 Parma, Italy
| | - Roland Pieruschka
- IBG-2 Plant Sciences, Forschungszentrum Jülich, 52428 Jülich, Germany
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