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Martínez-Bachs B, Rimola A. Gas-Phase vs. Grain-Surface Formation of Interstellar Complex Organic Molecules: A Comprehensive Quantum-Chemical Study. Int J Mol Sci 2023; 24:16824. [PMID: 38069147 PMCID: PMC10706303 DOI: 10.3390/ijms242316824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 11/20/2023] [Accepted: 11/24/2023] [Indexed: 12/18/2023] Open
Abstract
Several organic chemical compounds (the so-called interstellar complex organic molecules, iCOMs) have been identified in the interstellar medium (ISM). Examples of iCOMs are formamide (HCONH2), acetaldehyde (CH3CHO), methyl formate (CH3OCHO), or formic acid (HCOOH). iCOMs can serve as precursors of other organic molecules of enhanced complexity, and hence they are key species in chemical evolution in the ISM. The formation of iCOMs is still a subject of a vivid debate, in which gas-phase or grain-surface syntheses have been postulated. In this study, we investigate the grain-surface-formation pathways for the four above-mentioned iCOMs by transferring their primary gas-phase synthetic routes onto water ice surfaces. Our objective is twofold: (i) to identify potential grain-surface-reaction mechanisms leading to the formation of these iCOMs, and (ii) to decipher either parallelisms or disparities between the gas-phase and the grain-surface reactions. Results obtained indicate that the presence of the icy surface modifies the energetic features of the reactions compared to the gas-phase scenario, by increasing some of the energy barriers. Therefore, the investigated gas-phase mechanisms seem unlikely to occur on the icy grains, highlighting the distinctiveness between the gas-phase and the grain-surface chemistry.
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Affiliation(s)
| | - Albert Rimola
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Catalonia, Spain;
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Bancone N, Pantaleone S, Ugliengo P, Rimola A, Corno M. Adsorption of HCN on cosmic silicates: a periodic quantum mechanical study. Phys Chem Chem Phys 2023; 25:26797-26812. [PMID: 37781958 DOI: 10.1039/d3cp01459b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/03/2023]
Abstract
Hydrogen cyanide (HCN) represents a small but widely distributed fraction of the interstellar molecules, and it has been observed in all the environments characterizing the formation of a new planetary system. HCN can polymerize to form biomolecules, including adenine (H5C5N5), and it has drawn attention as a possible precursor of several building blocks of life due to the presence of its polymerization products in meteorites, comets and other asteroidal bodies. To elucidate the potential catalytic role that cosmic silicates have played in these processes, we have investigated, at DFT-PBE level inclusive of a posteriori dispersion correction, the energetic and spectroscopic features of the adsorption of HCN molecules on the most relevant crystalline surfaces of the mineral forsterite (Mg2SiO4), a common silicate constituent of the interstellar core grains and planetary rocky bodies. The results reveal that HCN adsorbs both in molecular and dissociative ways, within a wide range of adsorption energies (-29.4 to -466.4 kJ mol-1). Thermodynamic and kinetic results show that dissociative adsorption is dominant already at low temperatures, a fact particularly relevant at the protoplanetary conditions (i.e., the latest stages in the star system formation process). The simulated spectroscopic features of the studied adducts show a wide range of different degrees of perturbation of C-H and CN bonds. This finding agrees with previous experimental works, and our results confirm that a complex chemistry is observed when this astrochemically-relevant molecule interacts with Mg2SiO4, which may be associated with a considerable potential reactivity towards the formation of relevant prebiotic compounds.
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Affiliation(s)
- Niccolò Bancone
- Dipartimento di Chimica and NIS - Nanostructured Interfaces and Surfaces - Centre, Università degli Studi di Torino, via P. Giuria 7, 10125, Torino, Italy.
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain.
| | - Stefano Pantaleone
- Dipartimento di Chimica and NIS - Nanostructured Interfaces and Surfaces - Centre, Università degli Studi di Torino, via P. Giuria 7, 10125, Torino, Italy.
| | - Piero Ugliengo
- Dipartimento di Chimica and NIS - Nanostructured Interfaces and Surfaces - Centre, Università degli Studi di Torino, via P. Giuria 7, 10125, Torino, Italy.
| | - Albert Rimola
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain.
| | - Marta Corno
- Dipartimento di Chimica and NIS - Nanostructured Interfaces and Surfaces - Centre, Università degli Studi di Torino, via P. Giuria 7, 10125, Torino, Italy.
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Ceccarelli C. Spiers Memorial Lecture: Astrochemistry at high resolution. Faraday Discuss 2023; 245:11-51. [PMID: 37403476 PMCID: PMC10510039 DOI: 10.1039/d3fd00106g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 05/25/2023] [Indexed: 07/06/2023]
Abstract
Astrochemistry is the science that studies the chemistry in the Universe, namely the combination of two fields: astronomy and chemistry. It started about fifty years ago and it has progressed in leaps and bounds, often triggered by the advent of new telescopes. From the collection of new interstellar molecule detections, astrochemistry has evolved more and more in the quest to understand how they are formed and thrive in the harsh conditions of the interstellar medium. Collaboration between astronomers and chemists has never been more necessary than today, when new powerful astronomical facilities provide us with ever sharper images of the regions where interstellar molecules are present. This review focuses on the special case of interstellar complex organic molecules (iCOMs), one the most debated astrochemical fields and where the astronomers-chemists collaboration and synergy is indispensable. The review will go through the various phases of the formation of planetary system similar to the solar system, providing the most recent observational picture at each step. The current scenarios of the iCOMs formation will be laid down and the critical chemical processes and quantities involved in each of them will be discussed. The major goal of this review is not only to present the progress but, more importantly, to highlight the many areas of uncertainty. A few specific cases will be discussed to give practical examples of why the huge challenge that represents the formation of iCOMs can only be won if chemists and astronomers work together.
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Tinacci L, Germain A, Pantaleone S, Ferrero S, Ceccarelli C, Ugliengo P. Theoretical Distribution of the Ammonia Binding Energy at Interstellar Icy Grains: A New Computational Framework. ACS EARTH & SPACE CHEMISTRY 2022; 6:1514-1526. [PMID: 35747467 PMCID: PMC9208021 DOI: 10.1021/acsearthspacechem.2c00040] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2022] [Revised: 05/19/2022] [Accepted: 05/19/2022] [Indexed: 06/15/2023]
Abstract
The binding energies (BE) of molecules on the interstellar grains are crucial in the chemical evolution of the interstellar medium (ISM). Both temperature-programmed desorption (TPD) laboratory experiments and quantum chemistry computations have often provided, so far, only single values of the BE for each molecule. This is a severe limitation, as the ices enveloping the grain mantles are structurally amorphous, giving rise to a manifold of possible adsorption sites, each with different BEs. However, the amorphous ice nature prevents the knowledge of structural details, hindering the development of a common accepted atomistic icy model. In this work, we propose a computational framework that closely mimics the formation of the interstellar grain mantle through a water by water accretion. On that grain, an unbiased random (but well reproducible) positioning of the studied molecule is then carried out. Here we present the test case of NH3, a ubiquitous species in the molecular ISM. We provide the BE distribution computed by a hierarchy approach, using the semiempirical xTB-GFN2 as a low-level method to describe the whole icy cluster in combination with the B97D3 DFT functional as a high-level method on the local zone of the NH3 interaction. The final ZPE-corrected BE is computed at the ONIOM(DLPNO-CCSD(T)//B97D3:xTB-GFN2) level, ensuring the best cost/accuracy ratio. The main peak of the predicted NH3 BE distribution is in agreement with experimental TPD and computed data in the literature. A second broad peak at very low BE values is also present, which has never been detected before. It may provide the solution to a longstanding puzzle about the presence of gaseous NH3 also observed in cold ISM objects.
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Affiliation(s)
- Lorenzo Tinacci
- Dipartimento
di Chimica, Università degli Studi
di Torino, via P. Giuria
7, 10125 Torino, Italy
- Institut
de Planétologie et d’Astrophysique de Grenoble (IPAG), 38000 Grenoble, France
| | - Auréle Germain
- Dipartimento
di Chimica, Università degli Studi
di Torino, via P. Giuria
7, 10125 Torino, Italy
| | - Stefano Pantaleone
- Dipartimento
di Chimica, Università degli Studi
di Torino, via P. Giuria
7, 10125 Torino, Italy
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Stefano Ferrero
- Departament
de Quimica, Universitat Autònoma
de Barcelona, 08193 Bellaterra, Catalonia Spain
| | - Cecilia Ceccarelli
- Institut
de Planétologie et d’Astrophysique de Grenoble (IPAG), 38000 Grenoble, France
| | - Piero Ugliengo
- Dipartimento
di Chimica, Università degli Studi
di Torino, via P. Giuria
7, 10125 Torino, Italy
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Tracing the Primordial Chemical Life of Glycine: A Review from Quantum Chemical Simulations. Int J Mol Sci 2022; 23:ijms23084252. [PMID: 35457069 PMCID: PMC9030215 DOI: 10.3390/ijms23084252] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 04/08/2022] [Accepted: 04/09/2022] [Indexed: 12/28/2022] Open
Abstract
Glycine (Gly), NH2CH2COOH, is the simplest amino acid. Although it has not been directly detected in the interstellar gas-phase medium, it has been identified in comets and meteorites, and its synthesis in these environments has been simulated in terrestrial laboratory experiments. Likewise, condensation of Gly to form peptides in scenarios resembling those present in a primordial Earth has been demonstrated experimentally. Thus, Gly is a paradigmatic system for biomolecular building blocks to investigate how they can be synthesized in astrophysical environments, transported and delivered by fragments of asteroids (meteorites, once they land on Earth) and comets (interplanetary dust particles that land on Earth) to the primitive Earth, and there react to form biopolymers as a step towards the emergence of life. Quantum chemical investigations addressing these Gly-related events have been performed, providing fundamental atomic-scale information and quantitative energetic data. However, they are spread in the literature and difficult to harmonize in a consistent way due to different computational chemistry methodologies and model systems. This review aims to collect the work done so far to characterize, at a quantum mechanical level, the chemical life of Gly, i.e., from its synthesis in the interstellar medium up to its polymerization on Earth.
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Serra-Peralta M, Domínguez-Dalmases C, Rimola A. Water formation on interstellar silicates: the role of Fe 2+/H 2 interactions in the O + H 2 → H 2O reaction. Phys Chem Chem Phys 2022; 24:28381-28393. [DOI: 10.1039/d2cp04051d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Water formation by reaction of H2 and O on silicate surfaces as a first step towards the generation of interstellar ice mantles is possible thanks to the activation of H2 inferred by Fe2+ ions and quantum tunnelling effects.
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Affiliation(s)
- Marc Serra-Peralta
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Catalonia, Spain
| | | | - Albert Rimola
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Catalonia, Spain
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Potapov A, McCoustra M. Physics and chemistry on the surface of cosmic dust grains: a laboratory view. INT REV PHYS CHEM 2021. [DOI: 10.1080/0144235x.2021.1918498] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Alexey Potapov
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Jena, Germany
| | - Martin McCoustra
- Institute of Chemical Sciences, Heriot-Watt University, Edinburgh, UK
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Computational Surface Modelling of Ices and Minerals of Interstellar Interest—Insights and Perspectives. MINERALS 2020. [DOI: 10.3390/min11010026] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The universe is molecularly rich, comprising from the simplest molecule (H2) to complex organic molecules (e.g., CH3CHO and NH2CHO), some of which of biological relevance (e.g., amino acids). This chemical richness is intimately linked to the different physical phases forming Solar-like planetary systems, in which at each phase, molecules of increasing complexity form. Interestingly, synthesis of some of these compounds only takes place in the presence of interstellar (IS) grains, i.e., solid-state sub-micron sized particles consisting of naked dust of silicates or carbonaceous materials that can be covered by water-dominated ice mantles. Surfaces of IS grains exhibit particular characteristics that allow the occurrence of pivotal chemical reactions, such as the presence of binding/catalytic sites and the capability to dissipate energy excesses through the grain phonons. The present know-how on the physicochemical features of IS grains has been obtained by the fruitful synergy of astronomical observational with astrochemical modelling and laboratory experiments. However, current limitations of these disciplines prevent us from having a full understanding of the IS grain surface chemistry as they cannot provide fundamental atomic-scale of grain surface elementary steps (i.e., adsorption, diffusion, reaction and desorption). This essential information can be obtained by means of simulations based on computational chemistry methods. One capability of these simulations deals with the construction of atom-based structural models mimicking the surfaces of IS grains, the very first step to investigate on the grain surface chemistry. This perspective aims to present the current state-of-the-art methods, techniques and strategies available in computational chemistry to model (i.e., construct and simulate) surfaces present in IS grains. Although we focus on water ice mantles and olivinic silicates as IS test case materials to exemplify the modelling procedures, a final discussion on the applicability of these approaches to simulate surfaces of other cosmic grain materials (e.g., cometary and meteoritic) is given.
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