1
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Eastment RV, Wong BBM, McGee MD. Convergent genomic signatures associated with vertebrate viviparity. BMC Biol 2024; 22:34. [PMID: 38331819 PMCID: PMC10854053 DOI: 10.1186/s12915-024-01837-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 01/30/2024] [Indexed: 02/10/2024] Open
Abstract
BACKGROUND Viviparity-live birth-is a complex and innovative mode of reproduction that has evolved repeatedly across the vertebrate Tree of Life. Viviparous species exhibit remarkable levels of reproductive diversity, both in the amount of care provided by the parent during gestation, and the ways in which that care is delivered. The genetic basis of viviparity has garnered increasing interest over recent years; however, such studies are often undertaken on small evolutionary timelines, and thus are not able to address changes occurring on a broader scale. Using whole genome data, we investigated the molecular basis of this innovation across the diversity of vertebrates to answer a long held question in evolutionary biology: is the evolution of convergent traits driven by convergent genomic changes? RESULTS We reveal convergent changes in protein family sizes, protein-coding regions, introns, and untranslated regions (UTRs) in a number of distantly related viviparous lineages. Specifically, we identify 15 protein families showing evidence of contraction or expansion associated with viviparity. We additionally identify elevated substitution rates in both coding and noncoding sequences in several viviparous lineages. However, we did not find any convergent changes-be it at the nucleotide or protein level-common to all viviparous lineages. CONCLUSIONS Our results highlight the value of macroevolutionary comparative genomics in determining the genomic basis of complex evolutionary transitions. While we identify a number of convergent genomic changes that may be associated with the evolution of viviparity in vertebrates, there does not appear to be a convergent molecular signature shared by all viviparous vertebrates. Ultimately, our findings indicate that a complex trait such as viviparity likely evolves with changes occurring in multiple different pathways.
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Affiliation(s)
- Rhiannon V Eastment
- School of Biological Sciences, Monash University, Melbourne, 3800, Australia.
| | - Bob B M Wong
- School of Biological Sciences, Monash University, Melbourne, 3800, Australia
| | - Matthew D McGee
- School of Biological Sciences, Monash University, Melbourne, 3800, Australia
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2
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Yusuf LH, Saldívar Lemus Y, Thorpe P, Macías Garcia C, Ritchie MG. Genomic Signatures Associated with Transitions to Viviparity in Cyprinodontiformes. Mol Biol Evol 2023; 40:msad208. [PMID: 37789509 PMCID: PMC10568250 DOI: 10.1093/molbev/msad208] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 08/23/2023] [Accepted: 09/19/2023] [Indexed: 10/05/2023] Open
Abstract
The transition from oviparity to viviparity has occurred independently over 150 times across vertebrates, presenting one of the most compelling cases of phenotypic convergence. However, whether the repeated, independent evolution of viviparity is driven by redeployment of similar genetic mechanisms and whether these leave a common signature in genomic divergence remains largely unknown. Although recent investigations into the evolution of viviparity have demonstrated striking similarity among the genes and molecular pathways involved across disparate vertebrate groups, quantitative tests for genome-wide convergent have provided ambivalent answers. Here, we investigate the potential role of molecular convergence during independent transitions to viviparity across an order of ray-finned freshwater fish (Cyprinodontiformes). We assembled de novo genomes and utilized publicly available genomes of viviparous and oviparous species to test for molecular convergence across both coding and noncoding regions. We found no evidence for an excess of molecular convergence in amino acid substitutions and in rates of sequence divergence, implying independent genetic changes are associated with these transitions. However, both statistical power and biological confounds could constrain our ability to detect significant correlated evolution. We therefore identified candidate genes with potential signatures of molecular convergence in viviparous Cyprinodontiformes lineages. Motif enrichment and gene ontology analyses suggest transcriptional changes associated with early morphogenesis, brain development, and immunity occurred alongside the evolution of viviparity. Overall, however, our findings indicate that independent transitions to viviparity in these fish are not strongly associated with an excess of molecular convergence, but a few genes show convincing evidence of convergent evolution.
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Affiliation(s)
- Leeban H Yusuf
- Centre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, UK
| | - Yolitzi Saldívar Lemus
- Centre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, UK
- Department of Biology, Texas State University, San Marcos, TX, USA
| | - Peter Thorpe
- The Data Analysis Group, School of Life Sciences, University of Dundee, Dundee, UK
- School of Medicine, University of North Haugh, St Andrews KY16 9TF, UK
| | - Constantino Macías Garcia
- Instituto de Ecologia, Universidad Nacional Autónoma de México, Ciudad Universitaria, Mexico City CdMx, Mexico
| | - Michael G Ritchie
- Centre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, UK
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3
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Safian D, Ahmed M, van Kruistum H, Furness AI, Reznick DN, Wiegertjes GF, Pollux BJ. Repeated independent origins of the placenta reveal convergent and divergent organ evolution within a single fish family (Poeciliidae). SCIENCE ADVANCES 2023; 9:eadf3915. [PMID: 37611099 PMCID: PMC10446500 DOI: 10.1126/sciadv.adf3915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 07/24/2023] [Indexed: 08/25/2023]
Abstract
An outstanding question in biology is to what extent convergent evolution produces similar, but not necessarily identical, complex phenotypic solutions. The placenta is a complex organ that repeatedly evolved in the livebearing fish family Poeciliidae. Here, we apply comparative approaches to test whether evolution has produced similar or different placental phenotypes in the Poeciliidae and to what extent these phenotypes correlate with convergence at the molecular level. We show the existence of two placental phenotypes characterized by distinctly different anatomical adaptations (divergent evolution). Furthermore, each placental phenotype independently evolved multiple times across the family, providing evidence for repeated convergence. Moreover, our comparative genomic analysis revealed that the genomes of species with different placentas are evolving at a different pace. Last, we show that the two placental phenotypes correlate with two previously described contrasting life-history optima. Our results argue for high evolvability (both divergent and convergent) of the placenta within a group of closely related species in a single family.
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Affiliation(s)
- Diego Safian
- Experimental Zoology Group, Department of Animal Sciences, Wageningen University, Wageningen, Netherlands
- Aquaculture and Fisheries Group, Department of Animal Sciences, Wageningen University, Wageningen, Netherlands
- Evolutionary Developmental Biology Laboratory, The Francis Crick Institute, London, UK
| | - Marwa Ahmed
- Experimental Zoology Group, Department of Animal Sciences, Wageningen University, Wageningen, Netherlands
- Aquaculture and Fisheries Group, Department of Animal Sciences, Wageningen University, Wageningen, Netherlands
| | - Henri van Kruistum
- Experimental Zoology Group, Department of Animal Sciences, Wageningen University, Wageningen, Netherlands
- Animal Breeding and Genomics, Department of Animal Sciences, Wageningen University, Wageningen, Netherlands
| | - Andrew I. Furness
- U.S. Fish and Wildlife Service, Maryland Fish and Wildlife Conservation Office, Annapolis, MD, USA
| | - David N. Reznick
- Department of Biology, University of California, Riverside, Riverside, CA, USA
| | - Geert F. Wiegertjes
- Aquaculture and Fisheries Group, Department of Animal Sciences, Wageningen University, Wageningen, Netherlands
| | - Bart J.A. Pollux
- Experimental Zoology Group, Department of Animal Sciences, Wageningen University, Wageningen, Netherlands
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4
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Whittington CM, Buddle AL, Griffith OW, Carter AM. Embryonic specializations for vertebrate placentation. Philos Trans R Soc Lond B Biol Sci 2022; 377:20210261. [PMID: 36252220 PMCID: PMC9574634 DOI: 10.1098/rstb.2021.0261] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 02/28/2022] [Indexed: 12/20/2022] Open
Abstract
The vertebrate placenta, a close association of fetal and parental tissue for physiological exchange, has evolved independently in sharks, teleost fishes, coelacanths, amphibians, squamate reptiles and mammals. This transient organ forms during pregnancy and is an important contributor to embryonic development in both viviparous and oviparous, brooding species. Placentae may be involved in transport of respiratory gases, wastes, immune molecules, hormones and nutrients. Depending on the taxon, the embryonic portion of the placenta is comprised of either extraembryonic membranes (yolk sac or chorioallantois) or temporary embryonic tissues derived via hypertrophy of pericardium, gill epithelium, gut, tails or fins. These membranes and tissues have been recruited convergently into placentae in several lineages. Here, we highlight the diversity and common features of embryonic tissues involved in vertebrate placentation and suggest future studies that will provide new knowledge about the evolution of pregnancy. This article is part of the theme issue 'Extraembryonic tissues: exploring concepts, definitions and functions across the animal kingdom'.
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Affiliation(s)
- Camilla M. Whittington
- School of Life and Environmental Sciences, The University of Sydney, Heydon-Laurence A08, New South Wales 2006, Australia
| | - Alice L. Buddle
- School of Life and Environmental Sciences, The University of Sydney, Heydon-Laurence A08, New South Wales 2006, Australia
| | - Oliver W. Griffith
- Department of Biological Sciences, Macquarie University, Sydney, New South Wales 2109, Australia
| | - Anthony M. Carter
- Cardiovascular and Renal Research, Institute of Molecular Medicine, University of Southern Denmark, J. B. Winsloews Vej 21, 5000 Odense, Denmark
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5
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Genome-Wide Identification of Laminin Family Related to Follicular Pseudoplacenta Development in Black Rockfish ( Sebastes schlegelii). Int J Mol Sci 2022; 23:ijms231810523. [PMID: 36142434 PMCID: PMC9504374 DOI: 10.3390/ijms231810523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Revised: 08/27/2022] [Accepted: 08/29/2022] [Indexed: 11/17/2022] Open
Abstract
As major elements of the basement membrane, laminins play a significant role in angiogenesis, migration, and adhesion of various cells. Sebastes schlegelii is a marine viviparous teleost of commercial importance. Previous research has reported abundant blood vessels and connective tissue in the ovary during gestation. In this study, 14 laminin genes of the α, β, and γ subfamilies from genomic data were identified based on zebrafish and human laminins, distributed on 9 chromosomes in S. schlegelii. Analysis of structural domains showed that coiled-coil regions and EGF domains existed in all laminin genes. Moreover, via qPCR, we found that the expression of laminin genes, including lama4, lama5, lamb4, lamc1, and lamc3, gradually increased from the phase III ovary stage and peaked in the early stage of gestation, especially lama4 and lama5 which showed dramatically increased expression at the blastula stage. Accordingly, in situ hybridization of lama4 was conducted. The results revealed that signals became stronger following the phase IV ovary stage, and the strongest signals were located on the follicular pseudoplacenta at the blastula stage. These results suggest that the high expression of laminin genes, especially lama4 after fertilization, may drive cell proliferation, migration, and tissue expansion in the S. schlegelii ovary and ultimately promote follicular pseudoplacenta formation.
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6
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Xu X, Wang X, Liu Q, Qi X, Zhou L, Liu H, Li J. New insights on folliculogenesis and follicular placentation in marine viviparous fish black rockfish (Sebastes schlegelii). Gene X 2022; 827:146444. [PMID: 35378250 DOI: 10.1016/j.gene.2022.146444] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 01/28/2022] [Accepted: 03/18/2022] [Indexed: 02/04/2023] Open
Abstract
In viviparous fish, a considerable degree of variation in placental structures have been described. However, no distinct structures are reported in Scorpaenidae. In this study, we demonstrate a new type of folliculogenesis and follicular placentation in Sebastes schlegelii. Before copulation, the germinal epithelium gradually surrounds the oocytes and develops into individually follicles with a stalk-like structure hanging on the ovigerous lamella, which ensures each follicle have access to spermatozoa after copulation. From V to early gestation stage, the cyp17-I highly expressesaccompanied by cyp19a1a signals disappearance, and 11-ketotestosterone level keeps rising and peaks at blastula stage, while 17β-estradiol declines to the bottom. Meanwhile, the theca cells rapidly proliferate and invade outwards forming a highly hypertrophied and folded microvillous placenta. This unbalance of hormone might be an important factor driving the theca cells proliferation and invasion. Additionally, some conserved genes related to mammalian placentation are significantly high expression in follicular placenta suggesting the high convergence in vertebrate placenta evolution.
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Affiliation(s)
- Xiaojie Xu
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xueying Wang
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Qinghua Liu
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.
| | - Xin Qi
- Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Ocean University of China, Qingdao 266003, PR China
| | - Li Zhou
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Haoming Liu
- Weihai Shenghang Aquatic Science and Technology Co., LTD, Weihai, China; Fisheries Research Institute of Huancui District, Weihai, China
| | - Jun Li
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.
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7
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Foster CS, Van Dyke JU, Thompson MB, Smith NM, Simpfendorfer CA, Murphy CR, Whittington CM. Different Genes are Recruited During Convergent Evolution of Pregnancy and the Placenta. Mol Biol Evol 2022; 39:msac077. [PMID: 35388432 PMCID: PMC9048886 DOI: 10.1093/molbev/msac077] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The repeated evolution of the same traits in distantly related groups (convergent evolution) raises a key question in evolutionary biology: do the same genes underpin convergent phenotypes? Here, we explore one such trait, viviparity (live birth), which, qualitative studies suggest, may indeed have evolved via genetic convergence. There are >150 independent origins of live birth in vertebrates, providing a uniquely powerful system to test the mechanisms underpinning convergence in morphology, physiology, and/or gene recruitment during pregnancy. We compared transcriptomic data from eight vertebrates (lizards, mammals, sharks) that gestate embryos within the uterus. Since many previous studies detected qualitative similarities in gene use during independent origins of pregnancy, we expected to find significant overlap in gene use in viviparous taxa. However, we found no more overlap in uterine gene expression associated with viviparity than we would expect by chance alone. Each viviparous lineage exhibits the same core set of uterine physiological functions. Yet, contrary to prevailing assumptions about this trait, we find that none of the same genes are differentially expressed in all viviparous lineages, or even in all viviparous amniote lineages. Therefore, across distantly related vertebrates, different genes have been recruited to support the morphological and physiological changes required for successful pregnancy. We conclude that redundancies in gene function have enabled the repeated evolution of viviparity through recruitment of different genes from genomic "toolboxes", which are uniquely constrained by the ancestries of each lineage.
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Affiliation(s)
- Charles S.P. Foster
- School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, Australia
- School of Medical Sciences, University of New South Wales, Sydney, NSW, Australia
| | - James U. Van Dyke
- School of Molecular Sciences, La Trobe University, Albury-Wodonga Campus, VIC, Australia
| | - Michael B. Thompson
- School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, Australia
| | - Nicholas M.A. Smith
- School of Biological Sciences, University of Queensland, Brisbane, QLD, Australia
| | - Colin A. Simpfendorfer
- College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
| | - Christopher R. Murphy
- School of Medical Sciences and The Bosch Institute, University of Sydney, Sydney, NSW, Australia
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8
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Du K, Pippel M, Kneitz S, Feron R, da Cruz I, Winkler S, Wilde B, Avila Luna EG, Myers E, Guiguen Y, Macias Garcia C, Schartl M. Genome biology of the Darkedged Splitfin, Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation. Genome Res 2022; 32:583-594. [PMID: 35082141 PMCID: PMC8896457 DOI: 10.1101/gr.275826.121] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Accepted: 01/10/2022] [Indexed: 11/24/2022]
Abstract
Viviparity evolved independently about 150 times in vertebrates and more than 20 times in fish. Several lineages added to the protection of the embryo inside the body of the mother, the provisioning of nutrients, and physiological exchange. This often led to the evolution of a placenta. Among fish, one of the most complex systems serving the function of the placenta is the embryonal trophotaenia/ovarian luminal epithelium of the goodeid fishes. For a better understanding of this feature and others of this group of fishes, high-quality genomic resources are essential. We have sequenced the genome of the darkedged splitfin, Girardinichthys multiradiatus. The assembly is chromosome level and includes the X and Y Chromosomes. A large male-specific region on the Y was identified covering 80% of Chromosome 20, allowing some first inferences on the recent origin and a candidate male sex determining gene. Genome-wide transcriptomics uncovered sex-specific differences in brain gene expression with an enrichment for neurosteroidogenesis and testis genes in males. The expression signatures of the splitfin embryonal and maternal placenta showed overlap with homologous tissues including human placenta, the ovarian follicle epithelium of matrotrophic poeciliid fish species and the brood pouch epithelium of the seahorse. Our comparative analyses on the evolution of embryonal and maternal placenta indicate that the evolutionary novelty of maternal provisioning development repeatedly made use of genes that already had the same function in other tissues. In this way, preexisting modules are assembled and repurposed to provide the molecular changes for this novel trait.
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Affiliation(s)
| | - Martin Pippel
- Max-Planck Institute of Molecular Cell Biology and Genetics
| | | | - Romain Feron
- University of Lausanne, Swiss Institute of Bioinformatics, INRAE, LPGP
| | | | - Sylke Winkler
- Max-Planck Institute of Molecular Cell Biology and Genetics
| | | | - Edgar G Avila Luna
- Instituto de Ecologia, Universidad Nacional Autónoma de México, Ciudad Universitaria, Circuito exterior s/n anexo al Jardín Botánico
| | - Eugene Myers
- Max-Planck Institute of Molecular Cell Biology and Genetics
| | | | - Constantino Macias Garcia
- Instituto de Ecologia, Universidad Nacional Autónoma de México, Ciudad Universitaria, Circuito exterior s/n anexo al Jardín Botánico
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9
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Hilgers L, Roth O, Nolte AW, Schüller A, Spanke T, Flury JM, Utama IV, Altmüller J, Wowor D, Misof B, Herder F, Böhne A, Schwarzer J. Inflammation and convergent placenta gene co-option contributed to a novel reproductive tissue. Curr Biol 2021; 32:715-724.e4. [PMID: 34932936 PMCID: PMC8837275 DOI: 10.1016/j.cub.2021.12.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 08/27/2021] [Accepted: 12/01/2021] [Indexed: 12/13/2022]
Abstract
The evolution of pregnancy exposes parental tissues to new, potentially stressful conditions, which can trigger inflammation.1 Inflammation is costly2,3 and can induce embryo rejection, which constrains the evolution of pregnancy.1 In contrast, inflammation can also promote morphological innovation at the maternal-embryonic interface as exemplified by co-option of pro-inflammatory signaling for eutherian embryo implantation.1,4,5 Given its dual function, inflammation could be a key process explaining how innovations such as pregnancy and placentation evolved many times convergently. Pelvic brooding ricefishes evolved a novel “plug” tissue,6,7 which forms inside the female gonoduct after spawning, anchors egg-attaching filaments, and enables pelvic brooders to carry eggs externally until hatching.6,8 Compared to pregnancy, i.e., internal bearing of embryos, external bearing should alleviate constraints on inflammation in the reproductive tract. We thus hypothesized that an ancestral inflammation triggered by the retention of attaching filaments gave rise to pathways orchestrating plug formation. In line with our hypothesis, histological sections of the developing plug revealed signs of gonoduct injuries by egg-attaching filaments in the pelvic brooding ricefish Oryzias eversi. Tissue-specific transcriptomes showed that inflammatory signaling dominates the plug transcriptome and inflammation-induced genes controlling vital processes for plug development such as tissue growth and angiogenesis were overexpressed in the plug. Finally, mammalian placenta genes were enriched in the plug transcriptome, indicating convergent gene co-option for building, attaching, and sustaining a transient tissue in the female reproductive tract. This study highlights the role of gene co-option and suggests that recruiting inflammatory signaling into physiological processes provides a fast-track to evolutionary innovation. Pelvic brooding induces tissue-specific changes in gene expression Inflammatory signaling characterizes transcriptome of the egg-anchoring plug Similar to embryo implantation, the plug likely evolved from an inflammatory response Mammalian placenta genes were independently co-opted into the plug
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Affiliation(s)
- Leon Hilgers
- Zoological Research Museum Alexander Koenig (ZFMK), Leibniz Institute for the Analysis of Biodiversity Change (LIB), Bonn, Germany; LOEWE Centre for Translational Biodiversity Genomics (TBG), Frankfurt, Germany.
| | - Olivia Roth
- Helmholtz Centre for Ocean Research Kiel (GEOMAR), Kiel, Germany; Marine Evolutionary Biology, Kiel University, Kiel, Germany
| | | | - Alina Schüller
- Zoological Research Museum Alexander Koenig (ZFMK), Leibniz Institute for the Analysis of Biodiversity Change (LIB), Bonn, Germany
| | - Tobias Spanke
- Zoological Research Museum Alexander Koenig (ZFMK), Leibniz Institute for the Analysis of Biodiversity Change (LIB), Bonn, Germany
| | - Jana M Flury
- Zoological Research Museum Alexander Koenig (ZFMK), Leibniz Institute for the Analysis of Biodiversity Change (LIB), Bonn, Germany
| | - Ilham V Utama
- Museum Zoologicum Bogoriense, Research Centre for Biology, National Research and Innovation Agency, Cibinong, Indonesia
| | - Janine Altmüller
- Cologne Center for Genomics (CCG), Cologne University, Cologne, Germany
| | - Daisy Wowor
- Museum Zoologicum Bogoriense, Research Centre for Biology, National Research and Innovation Agency, Cibinong, Indonesia
| | - Bernhard Misof
- Zoological Research Museum Alexander Koenig (ZFMK), Leibniz Institute for the Analysis of Biodiversity Change (LIB), Bonn, Germany
| | - Fabian Herder
- Zoological Research Museum Alexander Koenig (ZFMK), Leibniz Institute for the Analysis of Biodiversity Change (LIB), Bonn, Germany
| | - Astrid Böhne
- Zoological Research Museum Alexander Koenig (ZFMK), Leibniz Institute for the Analysis of Biodiversity Change (LIB), Bonn, Germany
| | - Julia Schwarzer
- Zoological Research Museum Alexander Koenig (ZFMK), Leibniz Institute for the Analysis of Biodiversity Change (LIB), Bonn, Germany.
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10
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Affiliation(s)
- Camilla M Whittington
- School of Life and Environmental Sciences, The University of Sydney, Camperdown, New South Wales, Australia.
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11
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Zandonà E, Kajin M, Buckup PA, Amaral JR, Souto-Santos ICA, Reznick DN. Mode of maternal provisioning in the fish genus Phalloceros: a variation on the theme of matrotrophy. Biol J Linn Soc Lond 2021. [DOI: 10.1093/biolinnean/blab121] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
The placenta is a complex organ that shows high morphological diversity. Among fish, the first vertebrates that have evolved a placenta, the family Poeciliidae exhibits very diverse modes of maternal provisioning even among congeneric species. Here, we investigated the embryonic growth curve across seven recently-described species of the highly diverse genus Phalloceros (Eigenmann, 1907). We also investigated possible intraspecific differences and whether other female characteristics affected embryo mass. We found that embryo mass decreased until around stage 20 and then increased, resulting in a 1.5 to 3-fold mass gain from fertilization to birth. Embryo mass changed non-linearly with stage of development and was affected by species identity (or locality) and female somatic dry mass. This initial loss then gain of embryonic mass during development is unique among other Poeciliidae species and was conserved across populations and species, even though size at birth can vary. Other species instead either lose mass if they lack placentas or gain mass exponentially if they have placentas. The Phalloceros mode of maternal provisioning could thus represent a different form from that seen in other species of Poeciliidae.
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Affiliation(s)
- Eugenia Zandonà
- Programa de Pós-graduação em Ecologia e Evolução, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ 20550-013, Brazil
| | - Maja Kajin
- Programa de Pós-graduação em Ecologia e Evolução, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ 20550-013, Brazil
- Department of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Paulo A Buckup
- Museu Nacional, Universidade Federal do Rio de Janeiro, 20940-040 Rio de Janeiro, RJ, Brazil
| | - Jeferson Ribeiro Amaral
- Programa de Pós-graduação em Ecologia e Evolução, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ 20550-013, Brazil
| | - Igor C A Souto-Santos
- Museu Nacional, Universidade Federal do Rio de Janeiro, 20940-040 Rio de Janeiro, RJ, Brazil
| | - David N Reznick
- Department of Biology, University of California Riverside, Riverside, CA 92521, USA
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12
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van Kruistum H, Nijland R, Reznick DN, Groenen MAM, Megens HJ, Pollux BJA. Parallel Genomic Changes Drive Repeated Evolution of Placentas in Live-Bearing Fish. Mol Biol Evol 2021; 38:2627-2638. [PMID: 33620468 PMCID: PMC8136483 DOI: 10.1093/molbev/msab057] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
The evolutionary origin of complex organs challenges empirical study because most organs evolved hundreds of millions of years ago. The placenta of live-bearing fish in the family Poeciliidae represents a unique opportunity to study the evolutionary origin of complex organs, because in this family a placenta evolved at least nine times independently. It is currently unknown whether this repeated evolution is accompanied by similar, repeated, genomic changes in placental species. Here, we compare whole genomes of 26 poeciliid species representing six out of nine independent origins of placentation. Evolutionary rate analysis revealed that the evolution of the placenta coincides with convergent shifts in the evolutionary rate of 78 protein-coding genes, mainly observed in transporter- and vesicle-located genes. Furthermore, differences in sequence conservation showed that placental evolution coincided with similar changes in 76 noncoding regulatory elements, occurring primarily around genes that regulate development. The unexpected high occurrence of GATA simple repeats in the regulatory elements suggests an important function for GATA repeats in developmental gene regulation. The distinction in molecular evolution observed, with protein-coding parallel changes more often found in metabolic and structural pathways, compared with regulatory change more frequently found in developmental pathways, offers a compelling model for complex trait evolution in general: changing the regulation of otherwise highly conserved developmental genes may allow for the evolution of complex traits.
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Affiliation(s)
- Henri van Kruistum
- Animal Breeding and Genomics Group, Wageningen University, Wageningen, The Netherlands.,Experimental Zoology Group, Wageningen University, Wageningen, The Netherlands
| | - Reindert Nijland
- Marine Animal Ecology Group, Wageningen University, Wageningen, The Netherlands
| | - David N Reznick
- Department of Biology, University of California, Riverside, CA, USA
| | - Martien A M Groenen
- Animal Breeding and Genomics Group, Wageningen University, Wageningen, The Netherlands
| | - Hendrik-Jan Megens
- Animal Breeding and Genomics Group, Wageningen University, Wageningen, The Netherlands.,Aquaculture and Fisheries Group, Wageningen University, Wageningen, The Netherlands
| | - Bart J A Pollux
- Experimental Zoology Group, Wageningen University, Wageningen, The Netherlands
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Saleh‐Subaie N, Johnson JB, Zúñiga‐Vega JJ. Small sizes, big strategies: the relationship between female size, matrotrophy and superfetation throughout the reproductive lives of poeciliid fishes. J Zool (1987) 2021. [DOI: 10.1111/jzo.12917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- N. Saleh‐Subaie
- Programa de Doctorado en Ciencias Biomédicas Universidad Nacional Autónoma de México Ciudad de México México
| | - J. B. Johnson
- Department of Biology Brigham Young University Provo UT USA
| | - J. J. Zúñiga‐Vega
- Departamento de Ecología y Recursos Naturales Facultad de Ciencias Universidad Nacional Autónoma de México Ciudad de México México
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14
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Mousavi SE, Purser GJ, Patil JG. Embryonic Onset of Sexually Dimorphic Heart Rates in the Viviparous Fish, Gambusia holbrooki. Biomedicines 2021; 9:165. [PMID: 33567532 PMCID: PMC7915484 DOI: 10.3390/biomedicines9020165] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Revised: 02/01/2021] [Accepted: 02/04/2021] [Indexed: 12/12/2022] Open
Abstract
In fish, little is known about sex-specific differences in physiology and performance of the heart and whether these differences manifest during development. Here for the first time, the sex-specific heart rates during embryogenesis of Gambusia holbrooki, from the onset of the heart rates (HRs) to just prior to parturition, was investigated using light cardiogram. The genetic sex of the embryos was post-verified using a sex-specific genetic marker. Results reveal that heart rates and resting time significantly increase (p < 0.05) with progressive embryonic development. Furthermore, both ventricular and atrial frequencies of female embryos were significantly higher (p < 0.05) than those of their male sibs at the corresponding developmental stages and remained so at all later developmental stages (p < 0.05). In concurrence, the heart rate and ventricular size of the adult females were also significantly (p < 0.05) higher and larger respectively than those of males. Collectively, the results suggest that the cardiac sex-dimorphism manifests as early as late-organogenesis and persists through adulthood in this species. These findings suggest that the cardiac measurements can be employed to non-invasively sex the developing embryos, well in advance of when their phenotypic sex is discernible. In addition, G. holbrooki could serve as a better model to study comparative vertebrate cardiovascular development as well as to investigate anthropogenic and climatic impacts on heart physiology of this species, that may be sex influenced.
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Affiliation(s)
- Seyed Ehsan Mousavi
- Fisheries and Aquaculture Centre, Institute for Marine and Antarctic Studies, University of Tasmania, Taroona, TAS 7053, Australia;
| | - G. John Purser
- Fisheries and Aquaculture Centre, Institute for Marine and Antarctic Studies, University of Tasmania, Taroona, TAS 7053, Australia;
| | - Jawahar G. Patil
- Fisheries and Aquaculture Centre, Institute for Marine and Antarctic Studies, University of Tasmania, Taroona, TAS 7053, Australia;
- Inland Fisheries Service, New Norfolk, TAS 7140, Australia
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