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For: House MA, Griswold CK, Lukens LN. Evidence for selection on gene expression in cultivated rice (Oryza sativa). Mol Biol Evol 2014;31:1514-25. [PMID: 24659814 DOI: 10.1093/molbev/msu110] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
Number Cited by Other Article(s)
1
Jing D, Liu X, He Q, Dang J, Hu R, Xia Y, Wu D, Wang S, Zhang Y, Xia Q, Zhang C, Yu Y, Guo Q, Liang G. Genome assembly of wild loquat (Eriobotrya japonica) and resequencing provide new insights into the genomic evolution and fruit domestication in loquat. HORTICULTURE RESEARCH 2023;10:uhac265. [PMID: 36778182 PMCID: PMC9909508 DOI: 10.1093/hr/uhac265] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 11/21/2022] [Indexed: 05/05/2023]
2
Saeidnia F, Majidi MM, Mirlohi A, Ahmadi B. Association analysis revealed loci linked to post-drought recovery and traits related to persistence of smooth bromegrass (Bromus inermis). PLoS One 2022;17:e0278687. [PMID: 36477736 PMCID: PMC9728867 DOI: 10.1371/journal.pone.0278687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 11/22/2022] [Indexed: 12/12/2022]  Open
3
Parakkunnel R, Bhojaraja Naik K, Susmita C, Girimalla V, Bhaskar KU, Sripathy KV, Shantharaja CS, Aravindan S, Kumar S, Lakhanpaul S, Bhat KV. Evolution and co-evolution: insights into the divergence of plant heat shock factor genes. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2022;28:1029-1047. [PMID: 35722513 PMCID: PMC9203654 DOI: 10.1007/s12298-022-01183-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 04/27/2022] [Accepted: 05/04/2022] [Indexed: 05/03/2023]
4
Kern AF, Yang GX, Khosla NM, Ang RML, Snyder MP, Fraser HB. Divergent patterns of selection on metabolite levels and gene expression. BMC Ecol Evol 2021;21:185. [PMID: 34587900 PMCID: PMC8482673 DOI: 10.1186/s12862-021-01915-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 09/06/2021] [Indexed: 11/19/2022]  Open
5
Hargreaves W, N'Daiye A, Walkowiak S, Pozniak CJ, Wiebe K, Enns J, Lukens L. The effects of crop attributes, selection, and recombination on Canadian bread wheat molecular variation. THE PLANT GENOME 2021;14:e20099. [PMID: 34009734 DOI: 10.1002/tpg2.20099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 03/09/2021] [Indexed: 06/12/2023]
6
Zhan S, Griswold C, Lukens L. Zea mays RNA-seq estimated transcript abundances are strongly affected by read mapping bias. BMC Genomics 2021;22:285. [PMID: 33874908 PMCID: PMC8056621 DOI: 10.1186/s12864-021-07577-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 03/30/2021] [Indexed: 11/27/2022]  Open
7
Saeidnia F, Majidi MM, Mirlohi A. Marker-trait association analysis for drought tolerance in smooth bromegrass. BMC PLANT BIOLOGY 2021;21:116. [PMID: 33632123 PMCID: PMC7908751 DOI: 10.1186/s12870-021-02891-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Accepted: 02/13/2021] [Indexed: 06/12/2023]
8
Evidence for the Accumulation of Nonsynonymous Mutations and Favorable Pleiotropic Alleles During Wheat Breeding. G3-GENES GENOMES GENETICS 2020;10:4001-4011. [PMID: 32900902 PMCID: PMC7642940 DOI: 10.1534/g3.120.401269] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
9
Avila LM, Obeidat W, Earl H, Niu X, Hargreaves W, Lukens L. Shared and genetically distinct Zea mays transcriptome responses to ongoing and past low temperature exposure. BMC Genomics 2018;19:761. [PMID: 30342485 PMCID: PMC6196024 DOI: 10.1186/s12864-018-5134-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2018] [Accepted: 10/01/2018] [Indexed: 11/10/2022]  Open
10
Xing S, Tao C, Song Z, Liu W, Yan J, Kang L, Lin C, Sang T. Coexpression network revealing the plasticity and robustness of population transcriptome during the initial stage of domesticating energy crop Miscanthus lutarioriparius. PLANT MOLECULAR BIOLOGY 2018;97:489-506. [PMID: 30006693 DOI: 10.1007/s11103-018-0754-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Accepted: 06/26/2018] [Indexed: 06/08/2023]
11
Cis-regulatory evolution in prokaryotes revealed by interspecific archaeal hybrids. Sci Rep 2017. [PMID: 28638059 PMCID: PMC5479820 DOI: 10.1038/s41598-017-04278-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
12
He C, Fu J, Zhang J, Li Y, Zheng J, Zhang H, Yang X, Wang J, Wang G. A Gene-Oriented Haplotype Comparison Reveals Recently Selected Genomic Regions in Temperate and Tropical Maize Germplasm. PLoS One 2017;12:e0169806. [PMID: 28099470 PMCID: PMC5242465 DOI: 10.1371/journal.pone.0169806] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Accepted: 12/21/2016] [Indexed: 11/19/2022]  Open
13
Naranjo S, Smith JD, Artieri CG, Zhang M, Zhou Y, Palmer ME, Fraser HB. Dissecting the Genetic Basis of a Complex cis-Regulatory Adaptation. PLoS Genet 2015;11:e1005751. [PMID: 26713447 PMCID: PMC4694769 DOI: 10.1371/journal.pgen.1005751] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2015] [Accepted: 11/30/2015] [Indexed: 12/23/2022]  Open
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