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For: Julca I, Marcet-Houben M, Cruz F, Vargas-Chavez C, Johnston JS, Gómez-Garrido J, Frias L, Corvelo A, Loska D, Cámara F, Gut M, Alioto T, Latorre A, Gabaldón T. Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha. Mol Biol Evol 2020;37:730-756. [PMID: 31702774 PMCID: PMC7038657 DOI: 10.1093/molbev/msz261] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
Number Cited by Other Article(s)
1
Yoon K, Williams S, Duncan EJ. DNA methylation machinery is involved in development and reproduction in the viviparous pea aphid (Acyrthosiphon pisum). INSECT MOLECULAR BIOLOGY 2024. [PMID: 38923717 DOI: 10.1111/imb.12936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Accepted: 06/07/2024] [Indexed: 06/28/2024]
2
Gao H, Li Y, Zhang X, Zhang H, Tian Y, Li B. Unraveling the G protein-coupled receptor superfamily in aphids: Contractions and duplications linked to phloem feeding. Gen Comp Endocrinol 2024;347:114435. [PMID: 38135222 DOI: 10.1016/j.ygcen.2023.114435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/12/2023] [Revised: 11/27/2023] [Accepted: 12/15/2023] [Indexed: 12/24/2023]
3
Dial DT, Weglarz KM, Brunet BMT, Havill NP, von Dohlen CD, Burke GR. Whole-genome sequence of the Cooley spruce gall adelgid, Adelges cooleyi (Hemiptera: Sternorrhyncha: Adelgidae). G3 (BETHESDA, MD.) 2023;14:jkad224. [PMID: 37766465 PMCID: PMC10755206 DOI: 10.1093/g3journal/jkad224] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 09/06/2023] [Accepted: 09/11/2023] [Indexed: 09/29/2023]
4
Li Z, Xue AZ, Maeda GP, Li Y, Nabity PD, Moran NA. Phylloxera and Aphids Show Distinct Features of Genome Evolution Despite Similar Reproductive Modes. Mol Biol Evol 2023;40:msad271. [PMID: 38069672 DOI: 10.1093/molbev/msad271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Revised: 11/06/2023] [Accepted: 12/05/2023] [Indexed: 12/19/2023]  Open
5
Holst JD, Murphy LG, Gorman MJ, Ragan EJ. Comparison of insect and human cytochrome b561 proteins: Insights into candidate ferric reductases in insects. PLoS One 2023;18:e0291564. [PMID: 38039324 PMCID: PMC10691727 DOI: 10.1371/journal.pone.0291564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 11/19/2023] [Indexed: 12/03/2023]  Open
6
Friedrich M. Parallel Losses of Blue Opsin Correlate with Compensatory Neofunctionalization of UV-Opsin Gene Duplicates in Aphids and Planthoppers. INSECTS 2023;14:774. [PMID: 37754742 PMCID: PMC10531960 DOI: 10.3390/insects14090774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Revised: 08/29/2023] [Accepted: 08/31/2023] [Indexed: 09/28/2023]
7
Li Z, Xue AZ, Maeda GP, Li Y, Nabity PD, Moran NA. Phylloxera and aphids show distinct features of genome evolution despite similar reproductive modes. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.28.555181. [PMID: 37693541 PMCID: PMC10491136 DOI: 10.1101/2023.08.28.555181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/12/2023]
8
Cui L, Cheng H, Yang Z, Xia C, Zhang L, Kong X. Comparative Analysis Reveals Different Evolutionary Fates and Biological Functions in Wheat Duplicated Genes (Triticum aestivum L.). PLANTS (BASEL, SWITZERLAND) 2023;12:3021. [PMID: 37687268 PMCID: PMC10489728 DOI: 10.3390/plants12173021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 08/20/2023] [Accepted: 08/21/2023] [Indexed: 09/10/2023]
9
Mathers TC, Wouters RHM, Mugford ST, Biello R, van Oosterhout C, Hogenhout SA. Hybridisation has shaped a recent radiation of grass-feeding aphids. BMC Biol 2023;21:157. [PMID: 37443008 PMCID: PMC10347838 DOI: 10.1186/s12915-023-01649-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 06/13/2023] [Indexed: 07/15/2023]  Open
10
Huang T, Liu Y, He K, Francis F, Wang B, Wang G. Chromosome-level genome assembly of the spotted alfalfa aphid Therioaphis trifolii. Sci Data 2023;10:274. [PMID: 37173339 PMCID: PMC10181989 DOI: 10.1038/s41597-023-02179-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 04/24/2023] [Indexed: 05/15/2023]  Open
11
Detoxification Gene Families at the Genome-Wide Level of Rhus Gall Aphid Schlechtendalia chinensis. Genes (Basel) 2022;13:genes13091627. [PMID: 36140795 PMCID: PMC9498883 DOI: 10.3390/genes13091627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Revised: 08/30/2022] [Accepted: 09/07/2022] [Indexed: 12/02/2022]  Open
12
Wei H, Ye Y, Huang H, Chen M, Yang Z, Chen X, Zhang C. Chromosome‐level genome assembly for the horned‐gall aphid provides insights into interactions between gall‐making insect and its host plant. Ecol Evol 2022;12:e8815. [PMID: 35475184 PMCID: PMC9021935 DOI: 10.1002/ece3.8815] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Accepted: 03/25/2022] [Indexed: 11/16/2022]  Open
13
Shigenobu S, Yorimoto S. Aphid hologenomics: current status and future challenges. CURRENT OPINION IN INSECT SCIENCE 2022;50:100882. [PMID: 35150917 DOI: 10.1016/j.cois.2022.100882] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 01/18/2022] [Accepted: 01/22/2022] [Indexed: 06/14/2023]
14
Fuentes D, Molina M, Chorostecki U, Capella-Gutiérrez S, Marcet-Houben M, Gabaldón T. PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies. Nucleic Acids Res 2021;50:D1062-D1068. [PMID: 34718760 PMCID: PMC8728271 DOI: 10.1093/nar/gkab966] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 10/02/2021] [Accepted: 10/05/2021] [Indexed: 12/20/2022]  Open
15
Deep Conservation of Hid-Like RHG Gene Family Homologs in Winged Insects Revealed by "Taxon Hopping" BLAST. INSECTS 2021;12:insects12110957. [PMID: 34821758 PMCID: PMC8620624 DOI: 10.3390/insects12110957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 10/08/2021] [Accepted: 10/12/2021] [Indexed: 11/16/2022]
16
Mathers TC, Wouters RHM, Mugford ST, Swarbreck D, van Oosterhout C, Hogenhout SA. Chromosome-Scale Genome Assemblies of Aphids Reveal Extensively Rearranged Autosomes and Long-Term Conservation of the X Chromosome. Mol Biol Evol 2021;38:856-875. [PMID: 32966576 PMCID: PMC7947777 DOI: 10.1093/molbev/msaa246] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
17
Genome Sequence of the Banana Aphid, Pentalonia nigronervosa Coquerel (Hemiptera: Aphididae) and Its Symbionts. G3-GENES GENOMES GENETICS 2020;10:4315-4321. [PMID: 33004433 PMCID: PMC7718742 DOI: 10.1534/g3.120.401358] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
18
Dermauw W, Van Leeuwen T, Feyereisen R. Diversity and evolution of the P450 family in arthropods. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2020;127:103490. [PMID: 33169702 DOI: 10.1016/j.ibmb.2020.103490] [Citation(s) in RCA: 89] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 10/09/2020] [Accepted: 10/09/2020] [Indexed: 05/13/2023]
19
Bao R, Friedrich M. Genomic signatures of globally enhanced gene duplicate accumulation in the megadiverse higher Diptera fueling intralocus sexual conflict resolution. PeerJ 2020;8:e10012. [PMID: 33083121 PMCID: PMC7560327 DOI: 10.7717/peerj.10012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 08/31/2020] [Indexed: 12/03/2022]  Open
20
Biello R, Singh A, Godfrey CJ, Fernández FF, Mugford ST, Powell G, Hogenhout SA, Mathers TC. A chromosome-level genome assembly of the woolly apple aphid, Eriosoma lanigerum Hausmann (Hemiptera: Aphididae). Mol Ecol Resour 2020;21:316-326. [PMID: 32985768 DOI: 10.1111/1755-0998.13258] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 08/21/2020] [Accepted: 09/07/2020] [Indexed: 01/18/2023]
21
Mathers TC. Improved Genome Assembly and Annotation of the Soybean Aphid (Aphis glycines Matsumura). G3 (BETHESDA, MD.) 2020;10:899-906. [PMID: 31969427 PMCID: PMC7056979 DOI: 10.1534/g3.119.400954] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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