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For: Boccia A, Petrillo M, di Bernardo D, Guffanti A, Mignone F, Confalonieri S, Luzi L, Pesole G, Paolella G, Ballabio A, Banfi S. DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes. Nucleic Acids Res 2005;33:D505-10. [PMID: 15608249 PMCID: PMC539965 DOI: 10.1093/nar/gki011] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Giel AS, Bigge J, Schumacher J, Maj C, Dasmeh P. Analysis of Evolutionary Conservation, Expression Level, and Genetic Association at a Genome-wide Scale Reveals Heterogeneity Across Polygenic Phenotypes. Mol Biol Evol 2024;41:msae115. [PMID: 38865495 PMCID: PMC11247350 DOI: 10.1093/molbev/msae115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Revised: 03/22/2024] [Accepted: 05/03/2024] [Indexed: 06/14/2024]  Open
2
Giordano S, Amato F, Elce A, Monti M, Iannone C, Pucci P, Seia M, Angioni A, Zarrilli F, Castaldo G, Tomaiuolo R. Molecular and functional analysis of the large 5' promoter region of CFTR gene revealed pathogenic mutations in CF and CFTR-related disorders. J Mol Diagn 2013;15:331-40. [PMID: 23470247 DOI: 10.1016/j.jmoldx.2013.01.001] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2012] [Revised: 01/07/2013] [Accepted: 01/10/2013] [Indexed: 11/17/2022]  Open
3
Exploring the Differences in Evolutionary Rates between Monogenic and Polygenic Disease Genes in Human. Mol Biol Evol 2009;27:934-41. [DOI: 10.1093/molbev/msp297] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
4
D'Elia AV, Bregant E, Passon N, Puppin C, Meneghel A, Damante G. Conservation across species identifies several transcriptional enhancers in the HEX genomic region. Mol Cell Biochem 2009;332:67-75. [PMID: 19554426 DOI: 10.1007/s11010-009-0175-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2008] [Accepted: 06/09/2009] [Indexed: 10/20/2022]
5
Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G. A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. BMC Genomics 2009;10:163. [PMID: 19379481 PMCID: PMC2678161 DOI: 10.1186/1471-2164-10-163] [Citation(s) in RCA: 195] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2008] [Accepted: 04/20/2009] [Indexed: 02/07/2023]  Open
6
Mignone F, Anselmo A, Donvito G, Maggi GP, Grillo G, Pesole G. Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes. BMC Genomics 2008;9:277. [PMID: 18547402 PMCID: PMC2442843 DOI: 10.1186/1471-2164-9-277] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2007] [Accepted: 06/11/2008] [Indexed: 11/10/2022]  Open
7
Weinberg Z, Regulski EE, Hammond MC, Barrick JE, Yao Z, Ruzzo WL, Breaker RR. The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches. RNA (NEW YORK, N.Y.) 2008;14:822-8. [PMID: 18369181 PMCID: PMC2327355 DOI: 10.1261/rna.988608] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2008] [Accepted: 02/11/2008] [Indexed: 05/20/2023]
8
Campos M, Abdalla CB, Santos-Rebouças CB, dos Santos AV, Pestana CP, Domingues ML, dos Santos JM, Pimentel MMG. Low significance of MECP2 mutations as a cause of mental retardation in Brazilian males. Brain Dev 2007;29:293-7. [PMID: 17084570 DOI: 10.1016/j.braindev.2006.09.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/19/2006] [Revised: 08/11/2006] [Accepted: 09/26/2006] [Indexed: 11/24/2022]
9
Kohn MH, Murphy WJ, Ostrander EA, Wayne RK. Genomics and conservation genetics. Trends Ecol Evol 2006;21:629-37. [PMID: 16908089 DOI: 10.1016/j.tree.2006.08.001] [Citation(s) in RCA: 156] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2005] [Revised: 06/29/2006] [Accepted: 08/01/2006] [Indexed: 10/24/2022]
10
Petrillo M, Silvestro G, Di Nocera PP, Boccia A, Paolella G. Stem-loop structures in prokaryotic genomes. BMC Genomics 2006;7:170. [PMID: 16820051 PMCID: PMC1590033 DOI: 10.1186/1471-2164-7-170] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2006] [Accepted: 07/04/2006] [Indexed: 12/16/2022]  Open
11
Rambaldi D, Guffanti A, Morandi P, Cassata G. NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae. BMC Bioinformatics 2005;6 Suppl 4:S22. [PMID: 16351749 PMCID: PMC1866385 DOI: 10.1186/1471-2105-6-s4-s22] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
12
Milanesi L, Petrillo M, Sepe L, Boccia A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella G. Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. BMC Bioinformatics 2005;6 Suppl 4:S20. [PMID: 16351747 PMCID: PMC1866387 DOI: 10.1186/1471-2105-6-s4-s20] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
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