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For: Kuwada NJ, Cheveralls KC, Traxler B, Wiggins PA. Mapping the driving forces of chromosome structure and segregation in Escherichia coli. Nucleic Acids Res 2013;41:7370-7. [PMID: 23775792 PMCID: PMC3753618 DOI: 10.1093/nar/gkt468] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
Number Cited by Other Article(s)
1
Köhler R, Kaganovitch E, Murray SM. High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS. eLife 2022;11:78743. [PMID: 36374535 PMCID: PMC9662831 DOI: 10.7554/elife.78743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 10/23/2022] [Indexed: 11/16/2022]  Open
2
Mancini L, Crozat E, Javer A, Lagomarsino MC, Cicuta P. Dynamics of Bacterial Chromosomes by Locus Tracking in Fluorescence Microscopy. Methods Mol Biol 2022;2476:155-170. [PMID: 35635703 DOI: 10.1007/978-1-0716-2221-6_12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
3
Polson JM, Zhu Q. Free energy and segregation dynamics of two channel-confined polymers of different lengths. Phys Rev E 2021;103:012501. [PMID: 33601524 DOI: 10.1103/physreve.103.012501] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 01/04/2021] [Indexed: 12/14/2022]
4
Post-replicative pairing of sister ter regions in Escherichia coli involves multiple activities of MatP. Nat Commun 2020;11:3796. [PMID: 32732900 PMCID: PMC7394560 DOI: 10.1038/s41467-020-17606-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Accepted: 07/03/2020] [Indexed: 02/07/2023]  Open
5
Kisner JR, Kuwada NJ. Nucleoid-mediated positioning and transport in bacteria. Curr Genet 2019;66:279-291. [PMID: 31691024 DOI: 10.1007/s00294-019-01041-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Revised: 10/21/2019] [Accepted: 10/23/2019] [Indexed: 12/28/2022]
6
Hofmann A, Mäkelä J, Sherratt DJ, Heermann D, Murray SM. Self-organised segregation of bacterial chromosomal origins. eLife 2019;8:e46564. [PMID: 31397672 PMCID: PMC6701925 DOI: 10.7554/elife.46564] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 08/09/2019] [Indexed: 01/12/2023]  Open
7
Wu F, Swain P, Kuijpers L, Zheng X, Felter K, Guurink M, Solari J, Jun S, Shimizu TS, Chaudhuri D, Mulder B, Dekker C. Cell Boundary Confinement Sets the Size and Position of the E. coli Chromosome. Curr Biol 2019;29:2131-2144.e4. [PMID: 31155353 PMCID: PMC7050463 DOI: 10.1016/j.cub.2019.05.015] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Revised: 04/27/2019] [Accepted: 05/03/2019] [Indexed: 11/28/2022]
8
Swain P, Mulder BM, Chaudhuri D. Confinement and crowding control the morphology and dynamics of a model bacterial chromosome. SOFT MATTER 2019;15:2677-2687. [PMID: 30830139 DOI: 10.1039/c8sm02092b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
9
Inferring Active Noise Characteristics from the Paired Observations of Anomalous Diffusion. Polymers (Basel) 2018;11:polym11010002. [PMID: 30959986 PMCID: PMC6401841 DOI: 10.3390/polym11010002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2018] [Revised: 12/17/2018] [Accepted: 12/17/2018] [Indexed: 11/24/2022]  Open
10
Dewachter L, Verstraeten N, Fauvart M, Michiels J. An integrative view of cell cycle control in Escherichia coli. FEMS Microbiol Rev 2018;42:116-136. [PMID: 29365084 DOI: 10.1093/femsre/fuy005] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Accepted: 01/19/2018] [Indexed: 11/14/2022]  Open
11
Polson JM, Kerry DRM. Segregation of polymers under cylindrical confinement: effects of polymer topology and crowding. SOFT MATTER 2018;14:6360-6373. [PMID: 30028460 DOI: 10.1039/c8sm01062e] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
12
Gherardi M, Calabrese L, Tamm M, Cosentino Lagomarsino M. Model of chromosomal loci dynamics in bacteria as fractional diffusion with intermittent transport. Phys Rev E 2017;96:042402. [PMID: 29347533 DOI: 10.1103/physreve.96.042402] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2017] [Indexed: 06/07/2023]
13
Cass JA, Kuwada NJ, Traxler B, Wiggins PA. Escherichia coli Chromosomal Loci Segregate from Midcell with Universal Dynamics. Biophys J 2017;110:2597-2609. [PMID: 27332118 DOI: 10.1016/j.bpj.2016.04.046] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Revised: 03/31/2016] [Accepted: 04/28/2016] [Indexed: 12/31/2022]  Open
14
Saito T, Sakaue T. Complementary mode analyses between sub- and superdiffusion. Phys Rev E 2017;95:042143. [PMID: 28505743 DOI: 10.1103/physreve.95.042143] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Indexed: 06/07/2023]
15
Mangiameli SM, Veit BT, Merrikh H, Wiggins PA. The Replisomes Remain Spatially Proximal throughout the Cell Cycle in Bacteria. PLoS Genet 2017;13:e1006582. [PMID: 28114307 PMCID: PMC5293282 DOI: 10.1371/journal.pgen.1006582] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Revised: 02/06/2017] [Accepted: 01/13/2017] [Indexed: 11/23/2022]  Open
16
Mangiameli SM, Merrikh CN, Wiggins PA, Merrikh H. Transcription leads to pervasive replisome instability in bacteria. eLife 2017;6. [PMID: 28092263 PMCID: PMC5305214 DOI: 10.7554/elife.19848] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2016] [Accepted: 01/15/2017] [Indexed: 12/19/2022]  Open
17
Mangiameli SM, Merrikh CN, Wiggins PA, Merrikh H. Transcription leads to pervasive replisome instability in bacteria. eLife 2017;6. [PMID: 28092263 DOI: 10.7554/elife.19848.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2016] [Accepted: 01/15/2017] [Indexed: 05/21/2023]  Open
18
Cass JA, Stylianidou S, Kuwada NJ, Traxler B, Wiggins PA. Probing bacterial cell biology using image cytometry. Mol Microbiol 2016;103:818-828. [PMID: 27935200 DOI: 10.1111/mmi.13591] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/28/2016] [Indexed: 01/01/2023]
19
Surovtsev IV, Campos M, Jacobs-Wagner C. DNA-relay mechanism is sufficient to explain ParA-dependent intracellular transport and patterning of single and multiple cargos. Proc Natl Acad Sci U S A 2016;113:E7268-E7276. [PMID: 27799522 PMCID: PMC5135302 DOI: 10.1073/pnas.1616118113] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
20
Stylianidou S, Brennan C, Nissen SB, Kuwada NJ, Wiggins PA. SuperSegger: robust image segmentation, analysis and lineage tracking of bacterial cells. Mol Microbiol 2016;102:690-700. [PMID: 27569113 DOI: 10.1111/mmi.13486] [Citation(s) in RCA: 108] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/19/2016] [Indexed: 11/29/2022]
21
Moolman MC, Tiruvadi Krishnan S, Kerssemakers JWJ, de Leeuw R, Lorent V, Sherratt DJ, Dekker NH. The progression of replication forks at natural replication barriers in live bacteria. Nucleic Acids Res 2016;44:6262-73. [PMID: 27166373 PMCID: PMC5291258 DOI: 10.1093/nar/gkw397] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Revised: 04/27/2016] [Accepted: 04/28/2016] [Indexed: 01/07/2023]  Open
22
Javer A, Lagomarsino MC, Cicuta P. Bacterial Chromosome Dynamics by Locus Tracking in Fluorescence Microscopy. Methods Mol Biol 2016;1431:161-173. [PMID: 27283309 DOI: 10.1007/978-1-4939-3631-1_13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
23
Vandebroek H, Vanderzande C. Dynamics of a polymer in an active and viscoelastic bath. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;92:060601. [PMID: 26764617 DOI: 10.1103/physreve.92.060601] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2015] [Indexed: 06/05/2023]
24
Lampo TJ, Kuwada NJ, Wiggins PA, Spakowitz AJ. Physical modeling of chromosome segregation in escherichia coli reveals impact of force and DNA relaxation. Biophys J 2015;108:146-53. [PMID: 25564861 DOI: 10.1016/j.bpj.2014.10.074] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2014] [Revised: 10/15/2014] [Accepted: 10/23/2014] [Indexed: 12/20/2022]  Open
25
Saito T, Sakaue T. Driven anomalous diffusion: An example from polymer stretching. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;92:012601. [PMID: 26274194 DOI: 10.1103/physreve.92.012601] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2015] [Indexed: 06/04/2023]
26
High-throughput cell-cycle imaging opens new doors for discovery. Curr Genet 2015;61:513-6. [DOI: 10.1007/s00294-015-0493-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2015] [Accepted: 05/07/2015] [Indexed: 10/23/2022]
27
Liu J. The ghost in the machine: is the bacterial chromosome a phantom chain? Biophys J 2015;108:20-1. [PMID: 25564847 DOI: 10.1016/j.bpj.2014.11.3451] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2014] [Accepted: 11/18/2014] [Indexed: 11/26/2022]  Open
28
Stylianidou S, Kuwada NJ, Wiggins PA. Cytoplasmic dynamics reveals two modes of nucleoid-dependent mobility. Biophys J 2014;107:2684-92. [PMID: 25468347 DOI: 10.1016/j.bpj.2014.10.030] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2014] [Revised: 10/13/2014] [Accepted: 10/15/2014] [Indexed: 11/19/2022]  Open
29
Polson JM, Montgomery LG. Polymer segregation under confinement: Free energy calculations and segregation dynamics simulations. J Chem Phys 2014;141:164902. [DOI: 10.1063/1.4898714] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
30
Persistent super-diffusive motion of Escherichia coli chromosomal loci. Nat Commun 2014;5:3854. [DOI: 10.1038/ncomms4854] [Citation(s) in RCA: 63] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2013] [Accepted: 04/10/2014] [Indexed: 01/15/2023]  Open
31
Lim HC, Surovtsev IV, Beltran BG, Huang F, Bewersdorf J, Jacobs-Wagner C. Evidence for a DNA-relay mechanism in ParABS-mediated chromosome segregation. eLife 2014;3:e02758. [PMID: 24859756 PMCID: PMC4067530 DOI: 10.7554/elife.02758] [Citation(s) in RCA: 154] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Accepted: 05/16/2014] [Indexed: 12/12/2022]  Open
32
RecA bundles mediate homology pairing between distant sisters during DNA break repair. Nature 2013;506:249-53. [PMID: 24362571 PMCID: PMC3925069 DOI: 10.1038/nature12868] [Citation(s) in RCA: 123] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2013] [Accepted: 11/05/2013] [Indexed: 11/08/2022]
33
Junier I, Boccard F, Espéli O. Polymer modeling of the E. coli genome reveals the involvement of locus positioning and macrodomain structuring for the control of chromosome conformation and segregation. Nucleic Acids Res 2013;42:1461-73. [PMID: 24194594 PMCID: PMC3919569 DOI: 10.1093/nar/gkt1005] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
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