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Harris JE. Concentric regulatory zones failed to halt surging COVID-19: Brooklyn 2020. Front Public Health 2022; 10:970363. [PMID: 36568788 PMCID: PMC9768182 DOI: 10.3389/fpubh.2022.970363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 11/11/2022] [Indexed: 12/13/2022] Open
Abstract
Methods We relied on reports of confirmed case incidence and test positivity, along with data on the movements of devices with location-tracking software, to evaluate a novel scheme of three concentric regulatory zones introduced by then New York Governor Cuomo to address an outbreak of COVID-19 in South Brooklyn in the fall of 2020. The regulatory scheme imposed differential controls on access to eating places, schools, houses of worship, large gatherings and other businesses within the three zones, but without restrictions on mobility. Results Within the central red zone, COVID-19 incidence temporarily declined from 131.2 per 100,000 population during the week ending October 3 to 62.5 per 100,000 by the week ending October 31, but then rebounded to 153.6 per 100,000 by the week ending November 28. Within the intermediate orange and peripheral yellow zones combined, incidence steadily rose from 28.8 per 100,000 during the week ending October 3 to 109.9 per 100,000 by the week ending November 28. Data on device visits to pairs of eating establishments straddling the red-orange boundary confirmed compliance with access controls. More general analysis of device movements showed stable patterns of movement between and beyond zones unaffected by the Governor's orders. A geospatial regression model of COVID-19 incidence in relation to device movements across zip code tabulation areas identified a cluster of five high-movement ZCTAs with estimated reproduction number 1.91 (95% confidence interval, 1.27-2.55). Discussion In the highly populous area of South Brooklyn, controls on access alone, without restrictions on movement, were inadequate to halt an advancing COVID-19 outbreak.
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Affiliation(s)
- Jeffrey E. Harris
- Massachusetts Institute of Technology, Cambridge, MA, United States,Eisner Health, Los Angeles, CA, United States,*Correspondence: Jeffrey E. Harris
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Singh HP, Bhatia SK, Bahri Y, Jain R. Optimal control strategies to combat COVID-19 transmission: A mathematical model with incubation time delay. RESULTS IN CONTROL AND OPTIMIZATION 2022; 9. [PMCID: PMC9552531 DOI: 10.1016/j.rico.2022.100176] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The coronavirus disease 2019, started spreading around December 2019, still persists in the population all across the globe. Though different countries have been able to cope with the disease to some extent and vaccination for the same has been developed, it cannot be ignored that the disease is still not on the verge of completely eradicating, which in turn creates a need for having deeper insights of the disease in order to understand it well and hence be able to work towards its eradication. Meanwhile, using mitigation strategies like non-pharmaceutical interventions can help in controlling the disease. In this work, our aim is to study the dynamics of COVID-19 using compartmental approach by applying various analytical methods. We obtain formula for important tools like R0 and establish the stability of disease-free equilibrium point for R0<1. Further, based on R0, we discuss the stability and existence of the endemic equilibrium point. We incorporate various control strategies possible and using optimal control theory, study their expected positive impacts on the spread of the disease. Later, using a biologically feasible set of parameters, we numerically analyse the model. We even study the trend of the outbreak in China, for over 120 days, where the active cases rise up to a peak and then the curve flattens.
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Affiliation(s)
| | | | | | - Riya Jain
- AIAS, Amity University, Noida, India
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Chen M, Chen Y, Xu Y, An Q, Min W. Population flow based spatial-temporal eigenvector filtering modeling for exploring effects of health risk factors on COVID-19. SUSTAINABLE CITIES AND SOCIETY 2022; 87:104256. [PMID: 36276579 PMCID: PMC9576912 DOI: 10.1016/j.scs.2022.104256] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 09/12/2022] [Accepted: 10/13/2022] [Indexed: 06/16/2023]
Abstract
The COVID-19 pandemic has had great impact on human health and social economy. Several studies examined spatial and temporal patterns of health risk factors associated with COVID-19, but population flow spillover effect has not been sufficiently considered. In this paper, a population flow-based spatial-temporal eigenvector filtering model (FLOW-ESTF) was developed to consider spatial-temporal patterns and population flow connectivity simultaneously. The proposed FLOW-ESTF method efficiently improved model prediction accuracy, which could help the government aware of the infection risk level and to make suitable control policies. The selected population flow spatial-temporal eigenvector contributed most to modeling and the visualization of corresponding eigenvector set helped to explore the underlying spatial-temporal patterns and pandemic transmission nodes. The model coefficients could reflect how health risk factors contribute the modeling of state-level COVID-19 weekly increased cases and how their influence changed through time, which could help people and government to better aware the potential health risks and to adjust control measures at different stage. The extracted population flow spatial-temporal eigenvector not only represents influence of population flow and its spillover effects but also represents some possible omitted health risk factors. This could provide an efficient path to solve the problem of spatial and temporal autocorrelation in COVID-19 modeling and an intuitive way to discover underlying spatial patterns, which will partially compensate for the problems of insufficient consideration of potential risk variables and missing data.
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Affiliation(s)
- Meijie Chen
- School of Resource and Environmental Sciences, Wuhan University, Wuhan 430079, China
| | - Yumin Chen
- School of Resource and Environmental Sciences, Wuhan University, Wuhan 430079, China
| | - Yanqing Xu
- School of Remote Sensing and Information Engineering, Wuhan University, Wuhan, Hubei 430079, China
| | - Qianying An
- School of Resource and Environmental Sciences, Wuhan University, Wuhan 430079, China
| | - Wankun Min
- School of Resource and Environmental Sciences, Wuhan University, Wuhan 430079, China
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Harris JE. Mobility was a significant determinant of reported COVID-19 incidence during the Omicron Surge in the most populous U.S. Counties. BMC Infect Dis 2022; 22:691. [PMID: 35971063 PMCID: PMC9376582 DOI: 10.1186/s12879-022-07666-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Accepted: 08/02/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Significant immune escape by the Omicron variant, along with the emergence of widespread worry fatigue, have called into question the robustness of the previously observed relation between population mobility and COVID-19 incidence. METHODS We employed principal component analysis to construct a one-dimensional summary indicator of six Google mobility categories. We related this mobility indicator to case incidence among 111 of the most populous U.S. counties during the Omicron surge from December 2021 through February 2022. RESULTS Reported COVID-19 incidence peaked earlier and declined more rapidly among those counties exhibiting more extensive decline in mobility between December 20 and January 3. Based upon a fixed-effects, longitudinal cohort model, we estimated that every 1% decline in mobility between December 20 and January 3 was associated with a 0.63% decline in peak incidence during the week ending January 17 (95% confidence interval, 0.40-0.86%). Based upon a cross-sectional analysis including mean household size and vaccination participation as covariates, we estimated that the same 1% decline in mobility was associated with a 0.36% decline in cumulative reported COVID-19 incidence from January 10 through February 28 (95% CI, 0.18-0.54%). CONCLUSION Omicron did not simply sweep through the U.S. population until it ran out of susceptible individuals to infect. To the contrary, a significant fraction managed to avoid infection by engaging in risk-mitigating behaviors. More broadly, the behavioral response to perceived risk should be viewed as an intrinsic component of the natural course of epidemics in humans.
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Affiliation(s)
- Jeffrey E Harris
- Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. .,Eisner Health, Los Angeles, CA, 90015, USA.
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Ge Y, Zhang WB, Wu X, Ruktanonchai CW, Liu H, Wang J, Song Y, Liu M, Yan W, Yang J, Cleary E, Qader SH, Atuhaire F, Ruktanonchai NW, Tatem AJ, Lai S. Untangling the changing impact of non-pharmaceutical interventions and vaccination on European COVID-19 trajectories. Nat Commun 2022; 13:3106. [PMID: 35661759 PMCID: PMC9166696 DOI: 10.1038/s41467-022-30897-1] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Accepted: 05/24/2022] [Indexed: 12/27/2022] Open
Abstract
Non-pharmaceutical interventions (NPIs) and vaccination are two fundamental approaches for mitigating the coronavirus disease 2019 (COVID-19) pandemic. However, the real-world impact of NPIs versus vaccination, or a combination of both, on COVID-19 remains uncertain. To address this, we built a Bayesian inference model to assess the changing effect of NPIs and vaccination on reducing COVID-19 transmission, based on a large-scale dataset including epidemiological parameters, virus variants, vaccines, and climate factors in Europe from August 2020 to October 2021. We found that (1) the combined effect of NPIs and vaccination resulted in a 53% (95% confidence interval: 42–62%) reduction in reproduction number by October 2021, whereas NPIs and vaccination reduced the transmission by 35% and 38%, respectively; (2) compared with vaccination, the change of NPI effect was less sensitive to emerging variants; (3) the relative effect of NPIs declined 12% from May 2021 due to a lower stringency and the introduction of vaccination strategies. Our results demonstrate that NPIs were complementary to vaccination in an effort to reduce COVID-19 transmission, and the relaxation of NPIs might depend on vaccination rates, control targets, and vaccine effectiveness concerning extant and emerging variants. Non-pharmaceutical interventions (NPIs) and COVID-19 vaccination have been implemented concurrently, making their relative effects difficult to measure. Here, the authors show that effects of NPIs reduced as vaccine coverage increased, but that NPIs could still be important in the context of more transmissible variants.
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Affiliation(s)
- Yong Ge
- State Key Laboratory of Resources and Environmental Information System, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China. .,College of Resources and Environment, University of Academy of Sciences, Beijing, China.
| | - Wen-Bin Zhang
- State Key Laboratory of Resources and Environmental Information System, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China.,College of Resources and Environment, University of Academy of Sciences, Beijing, China.,Lancaster Environment Center, Faculty of Science and Technology, Lancaster University, Lancaster, UK
| | - Xilin Wu
- State Key Laboratory of Resources and Environmental Information System, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China.,College of Resources and Environment, University of Academy of Sciences, Beijing, China
| | | | - Haiyan Liu
- Marine Data Center, South Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, China
| | - Jianghao Wang
- State Key Laboratory of Resources and Environmental Information System, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China.,College of Resources and Environment, University of Academy of Sciences, Beijing, China
| | - Yongze Song
- School of Design and the Built Environment, Curtin University, Perth, Australia
| | - Mengxiao Liu
- State Key Laboratory of Resources and Environmental Information System, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China.,College of Resources and Environment, University of Academy of Sciences, Beijing, China
| | - Wei Yan
- Respiratory Medicine Department, Peking University Third Hospital, Beijing, China
| | - Juan Yang
- School of Public Health, Fudan University, Key Laboratory of Public Health Safety, Ministry of Education, Shanghai, China.,Shanghai Institute of Infectious Disease and Biosecurity, Fudan University, Shanghai, China
| | - Eimear Cleary
- WorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK
| | - Sarchil H Qader
- WorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK.,Natural Resources Department, College of Agricultural Engineering Sciences, University of Sulaimani; Sulaimani 334, Kurdistan Region, Sulaymaniyah, Iraq
| | - Fatumah Atuhaire
- WorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK.,School of Mathematical Sciences, University of Southampton, Southampton, UK
| | | | - Andrew J Tatem
- WorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK.
| | - Shengjie Lai
- Shanghai Institute of Infectious Disease and Biosecurity, Fudan University, Shanghai, China. .,WorldPop, School of Geography and Environmental Science, University of Southampton, Southampton, UK. .,Institute for Life Sciences, University of Southampton, Southampton, UK.
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