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Shao W, Lin X, Yi Y, Huang Y, Qu L, Zhuo W, Liu H. Fast prediction of patient-specific organ doses in brain CT scans using support vector regression algorithm. Phys Med Biol 2024; 69:025010. [PMID: 38086079 DOI: 10.1088/1361-6560/ad14c7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 12/12/2023] [Indexed: 01/11/2024]
Abstract
Objectives. This study aims to develop a method for predicting patient-specific head organ doses by training a support vector regression (SVR) model based on radiomics features and graphics processing unit (GPU)-calculated reference doses.Methods. In this study, 237 patients who underwent brain CT scans were selected, and their CT data were transferred to an autosegmentation software to segment head regions of interest (ROIs). Subsequently, radiomics features were extracted from the CT data and ROIs, and the benchmark organ doses were computed using fast GPU-accelerated Monte Carlo (MC) simulations. The SVR organ dose prediction model was then trained using the radiomics features and benchmark doses. For the predicted organ doses, the relative root mean squared error (RRMSE), mean absolute percentage error (MAPE), and coefficient of determination (R2) were evaluated. The robustness of organ dose prediction was verified by changing the patient samples on the training and test sets randomly.Results. For all head organs, the maximal difference between the reference and predicted dose was less than 1 mGy. For the brain, the organ dose was predicted with an absolute error of 1.3%, and theR2reached up to 0.88. For the eyes and lens, the organ doses predicted by SVR achieved an RRMSE of less than 13%, the MAPE ranged from 4.5% to 5.5%, and theR2values were more than 0.7.Conclusions. Patient-specific head organ doses from CT examinations can be predicted within one second with high accuracy, speed, and robustness by training an SVR using radiomics features.
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Affiliation(s)
- Wencheng Shao
- Institute of Radiation Medicine, Fudan University, Shanghai, People's Republic of China
| | - Xin Lin
- Institute of Radiation Medicine, Fudan University, Shanghai, People's Republic of China
| | - Yanling Yi
- Institute of Radiation Medicine, Fudan University, Shanghai, People's Republic of China
| | - Ying Huang
- Department of Nuclear Science and Technology, Institute of Modern Physics, Fudan University, Shanghai, People's Republic of China
- Key Lab of Nucl. Phys. & Ion-Beam Appl. (MOE), Fudan University, Shanghai, People's Republic of China
- Department of Radiation Oncology, Shanghai Jiao Tong University Chest Hospital Shanghai, People's Republic of China
| | - Liangyong Qu
- Department of Radiology, Shanghai Zhongye Hospital, Shanghai, People's Republic of China
| | - Weihai Zhuo
- Institute of Radiation Medicine, Fudan University, Shanghai, People's Republic of China
| | - Haikuan Liu
- Institute of Radiation Medicine, Fudan University, Shanghai, People's Republic of China
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Pace E, Caruana CJ, Bosmans H, Cortis K, D'Anastasi M, Valentino G. CTContour: An open-source Python pipeline for automatic contouring and calculation of mean SSDE along the abdomino-pelvic region for CT images; validation on fifteen systems. Phys Med 2022; 103:190-198. [DOI: 10.1016/j.ejmp.2022.10.027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 10/01/2022] [Accepted: 10/31/2022] [Indexed: 11/13/2022] Open
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Porzio M, Anam C. Real-time fully automated dosimetric computation for CT images in the clinical workflow: A feasibility study. Front Oncol 2022; 12:798460. [PMID: 36033538 PMCID: PMC9403986 DOI: 10.3389/fonc.2022.798460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 07/19/2022] [Indexed: 11/13/2022] Open
Abstract
Background Currently, the volume computed tomography dose index (CTDIvol), the most-used quantity to express the output dose of a computed tomography (CT) patient’s dose, is not related to the real size and attenuation properties of each patient. The size-specific dose estimates (SSDE), based on the water-equivalent diameter (DW) overcome those issues. The proposed methods found in the literature do not allow real-time computation of DW and SSDE. Purpose This study aims to develop a software to compute DW and SSDE in a real-time clinical workflow. Method In total, 430 CT studies and scans of a water-filled funnel phantom were used to compute accuracy and evaluate the times required to compute the DW and SSDE. Two one-sided tests (TOST) equivalence test, Bland–Altman analysis, and bootstrap-based confidence interval estimations were used to evaluate the differences between actual diameter and DW computed automatically and between DW computed automatically and manually. Results The mean difference between the DW computed automatically and the actual water diameter for each slice is −0.027% with a TOST confidence interval equal to [−0.087%, 0.033%]. Bland–Altman bias is −0.009% [−0.016%, −0.001%] with lower limits of agreement (LoA) equal to −0.0010 [−0.094%, −0.068%] and upper LoA equal to 0.064% [0.051%, 0.077%]. The mean difference between DW computed automatically and manually is −0.014% with a TOST confidence interval equal to [−0.056%, 0.028%] on phantom and 0.41% with a TOST confidence interval equal to [0.358%, 0.462%] on real patients. The mean time to process a single image is 13.99 ms [13.69 ms, 14.30 ms], and the mean time to process an entire study is 11.5 s [10.62 s, 12.63 s]. Conclusion The system shows that it is possible to have highly accurate DW and SSDE in almost real-time without affecting the clinical workflow of CT examinations.
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Affiliation(s)
- Massimiliano Porzio
- Department of Fisica Sanitaria, Azienda Sanitaria Locale Cuneo1 (ASL CN1), Cuneo, Italy
- *Correspondence: Massimiliano Porzio,
| | - Choirul Anam
- Department of Physics, Faculty of Sciences and Mathematics, Diponegoro University, Semarang, Indonesia
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Salimi Y, Shiri I, Akhavanallaf A, Mansouri Z, Saberi Manesh A, Sanaat A, Pakbin M, Askari D, Sandoughdaran S, Sharifipour E, Arabi H, Zaidi H. Deep learning-based fully automated Z-axis coverage range definition from scout scans to eliminate overscanning in chest CT imaging. Insights Imaging 2021; 12:162. [PMID: 34743251 PMCID: PMC8572075 DOI: 10.1186/s13244-021-01105-3] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Accepted: 10/09/2021] [Indexed: 01/07/2023] Open
Abstract
BACKGROUND Despite the prevalence of chest CT in the clinic, concerns about unoptimized protocols delivering high radiation doses to patients still remain. This study aimed to assess the additional radiation dose associated with overscanning in chest CT and to develop an automated deep learning-assisted scan range selection technique to reduce radiation dose to patients. RESULTS A significant overscanning range (31 ± 24) mm was observed in clinical setting for over 95% of the cases. The average Dice coefficient for lung segmentation was 0.96 and 0.97 for anterior-posterior (AP) and lateral projections, respectively. By considering the exact lung coverage as the ground truth, and AP and lateral projections as input, The DL-based approach resulted in errors of 0.08 ± 1.46 and - 1.5 ± 4.1 mm in superior and inferior directions, respectively. In contrast, the error on external scout views was - 0.7 ± 4.08 and 0.01 ± 14.97 mm for superior and inferior directions, respectively.The ED reduction achieved by automated scan range selection was 21% in the test group. The evaluation of a large multi-centric chest CT dataset revealed unnecessary ED of more than 2 mSv per scan and 67% increase in the thyroid absorbed dose. CONCLUSION The proposed DL-based solution outperformed previous automatic methods with acceptable accuracy, even in complicated and challenging cases. The generizability of the model was demonstrated by fine-tuning the model on AP scout views and achieving acceptable results. The method can reduce the unoptimized dose to patients by exclunding unnecessary organs from field of view.
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Affiliation(s)
- Yazdan Salimi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, 1211, Geneva, Switzerland
| | - Isaac Shiri
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, 1211, Geneva, Switzerland
| | - Azadeh Akhavanallaf
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, 1211, Geneva, Switzerland
| | - Zahra Mansouri
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Abdollah Saberi Manesh
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, 1211, Geneva, Switzerland
| | - Amirhossein Sanaat
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, 1211, Geneva, Switzerland
| | - Masoumeh Pakbin
- Imaging Department, Qom University of Medical Sciences, Qom, Iran
| | - Dariush Askari
- Department of Radiology Technology, Shahid Beheshti University of Medical, Tehran, Iran
| | - Saleh Sandoughdaran
- Men's Health and Reproductive Health Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Ehsan Sharifipour
- Neuroscience Research Center, Qom University of Medical Sciences, Qom, Iran
| | - Hossein Arabi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, 1211, Geneva, Switzerland
| | - Habib Zaidi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, 1211, Geneva, Switzerland.
- Geneva University Neurocenter, Geneva University, Geneva, Switzerland.
- Department of Nuclear Medicine and Molecular Imaging, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.
- Department of Nuclear Medicine, University of Southern Denmark, Odense, Denmark.
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Anam C, Mahdani FR, Dewi WK, Sutanto H, Triadyaksa P, Haryanto F, Dougherty G. An improved method for automated calculation of the water-equivalent diameter for estimating size-specific dose in CT. J Appl Clin Med Phys 2021; 22:313-323. [PMID: 34291861 PMCID: PMC8425905 DOI: 10.1002/acm2.13367] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Revised: 05/22/2021] [Accepted: 07/10/2021] [Indexed: 12/24/2022] Open
Abstract
PURPOSE The aim of this study is to propose an algorithm for the automated calculation of water-equivalent diameter (Dw ) and size-specific dose estimation (SSDE) from clinical computed tomography (CT) images containing one or more substantial body part. METHODS All CT datasets were retrospectively acquired by the Toshiba Aquilion 128 CT scanner. The proposed algorithm consisted of a contouring stage for the Dw calculation, carried out by taking the six largest objects in the cross-sectional image of the patient's body, followed by the removal of the CT table depending on the center position (y-axis) of each object. Validation of the proposed algorithm used images of patients who had undergone chest examination with both arms raised up, one arm placed down and both arms placed down, images of the pelvic region consisting of one substantial object, and images of the lower extremities consisting of two separated areas. RESULTS The proposed algorithm gave the same results for Dw and SSDE as the previous algorithm when images consisted of one substantial body part. However, when images consisted of more than one substantial body part, the new algorithm was able to detect all parts of the patient within the image. The Dw values from the proposed algorithm were 9.5%, 15.4%, and 39.6% greater than the previous algorithm for the chest region with one arm placed down, both arms placed down, and images with two legs, respectively. The SSDE values from the proposed algorithm were 8.2%, 11.2%, and 20.6% lower than the previous algorithm for the same images, respectively. CONCLUSIONS We have presented an improved algorithm for automated calculation of Dw and SSDE. The proposed algorithm is more general and gives accurate results for both Dw and SSDE whether the CT images contain one or more than one substantial body part.
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Affiliation(s)
- Choirul Anam
- Department of Physics, Faculty of Sciences and Mathematics, Diponegoro University, Central Java, Indonesia
| | - Fahmi Rosydiansyah Mahdani
- Department of Physics, Faculty of Sciences and Mathematics, Diponegoro University, Central Java, Indonesia
| | - Winda Kusuma Dewi
- Department of Physics, Faculty of Sciences and Mathematics, Diponegoro University, Central Java, Indonesia
| | - Heri Sutanto
- Department of Physics, Faculty of Sciences and Mathematics, Diponegoro University, Central Java, Indonesia
| | - Pandji Triadyaksa
- Department of Physics, Faculty of Sciences and Mathematics, Diponegoro University, Central Java, Indonesia
| | - Freddy Haryanto
- Department of Physics, Faculty of Mathematics and Natural Sciences, Bandung Institute of Technology, Bandung, West Java, Indonesia
| | - Geoff Dougherty
- Department of Applied Physics and Medical Imaging, California State University Channel Islands, Camarillo, CA, USA
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