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Song Q, Han S, Hu S, Xu Y, Zuo K. The Verticillium dahliae Effector VdPHB1 Promotes Pathogenicity in Cotton and Interacts with the Immune Protein GhMC4. PLANT & CELL PHYSIOLOGY 2024; 65:1173-1183. [PMID: 38619117 DOI: 10.1093/pcp/pcae043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 04/09/2024] [Accepted: 04/14/2024] [Indexed: 04/16/2024]
Abstract
Verticillium dahliae is a kind of pathogenic fungus that brings about wilt disease and great losses in cotton. The molecular mechanism of the effectors in V. dahliae regulating cotton immunity remains largely unknown. Here, we identified an effector of V. dahliae, VdPHB1, whose gene expression is highly induced by infection. The VdPHB1 protein is localized to the intercellular space of cotton plants. Knock-out of the VdPHB1 gene in V. dahliae had no effect on pathogen growth, but decreased the virulence in cotton. VdPHB1 ectopically expressed Arabidopsis plants were growth-inhibited and significantly susceptible to V. dahliae. Further, VdPHB1 interacted with the type II metacaspase GhMC4. GhMC4 gene-silenced cotton plants were more sensitive to V. dahliae with reduced expression of pathogen defense-related and programmed cell death genes. The accumulation of GhMC4 protein was concurrently repressed when VdPHB1 protein was expressed during infection. In summary, these results have revealed a novel molecular mechanism of virulence regulation that the secreted effector VdPHB1 represses the activity of cysteine protease for helping V. dahliae infection in cotton.
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Affiliation(s)
- Qingwei Song
- Single Cell Research Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Song Han
- Single Cell Research Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Shi Hu
- Single Cell Research Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Yiyang Xu
- Single Cell Research Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Kaijing Zuo
- Single Cell Research Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
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2
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Li W, Li P, Deng Y, Zhang Z, Situ J, Huang J, Li M, Xi P, Jiang Z, Kong G. Litchi aspartic protease LcAP1 enhances plant resistance via suppressing cell death triggered by the pectate lyase PlPeL8 from Peronophythora litchii. THE NEW PHYTOLOGIST 2024; 242:2682-2701. [PMID: 38622771 DOI: 10.1111/nph.19755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 03/20/2024] [Indexed: 04/17/2024]
Abstract
Plant cell death is regulated in plant-pathogen interactions. While some aspartic proteases (APs) participate in regulating programmed cell death or defense responses, the defense functions of most APs remain largely unknown. Here, we report on a virulence factor, PlPeL8, which is a pectate lyase found in the hemibiotrophic pathogen Peronophythora litchii. Through in vivo and in vitro assays, we confirmed the interaction between PlPeL8 and LcAP1 from litchi, and identified LcAP1 as a positive regulator of plant immunity. PlPeL8 induced cell death associated with NbSOBIR1 and NbMEK2. The 11 conserved residues of PlPeL8 were essential for inducing cell death and enhancing plant susceptibility. Twenty-three LcAPs suppressed cell death induced by PlPeL8 in Nicotiana benthamiana depending on their interaction with PlPeL8. The N-terminus of LcAP1 was required for inhibiting PlPeL8-triggered cell death and susceptibility. Furthermore, PlPeL8 led to higher susceptibility in NbAPs-silenced N. benthamiana than the GUS-control. Our results indicate the crucial roles of LcAP1 and its homologs in enhancing plant resistance via suppression of cell death triggered by PlPeL8, and LcAP1 represents a promising target for engineering disease resistance. Our study provides new insights into the role of plant cell death in the arms race between plants and hemibiotrophic pathogens.
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Affiliation(s)
- Wen Li
- National Key Laboratory of Green Pesticide/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, 510642, China
| | - Peng Li
- National Key Laboratory of Green Pesticide/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, 510642, China
| | - Yizhen Deng
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources/Integrative Microbiology Research Center, South China Agricultural University, Guangzhou, 510642, China
| | - Zijing Zhang
- National Key Laboratory of Green Pesticide/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, 510642, China
| | - Junjian Situ
- National Key Laboratory of Green Pesticide/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, 510642, China
| | - Ji Huang
- National Key Laboratory of Green Pesticide/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, 510642, China
| | - Minhui Li
- National Key Laboratory of Green Pesticide/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, 510642, China
| | - Pinggen Xi
- National Key Laboratory of Green Pesticide/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, 510642, China
| | - Zide Jiang
- National Key Laboratory of Green Pesticide/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, 510642, China
| | - Guanghui Kong
- National Key Laboratory of Green Pesticide/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, 510642, China
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Co-Infections by Fusarium circinatum and Phytophthora spp. on Pinus radiata: Complex Phenotypic and Molecular Interactions. PLANTS 2021; 10:plants10101976. [PMID: 34685785 PMCID: PMC8537148 DOI: 10.3390/plants10101976] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Revised: 09/17/2021] [Accepted: 09/18/2021] [Indexed: 11/17/2022]
Abstract
This study investigated the complex phenotypic and genetic response of Monterey pine (Pinus radiata) seedlings to co-infections by F. circinatum, the causal agent of pine pitch canker disease, and the oomycetes Phytophthora xcambivora and P. parvispora. Monterey pine seedlings were wound-inoculated with each single pathogen and with the combinations F. circinatum/P. xcambivora and F. circinatum/P. parvispora. Initially, seedlings inoculated only with F. circinatum showed less severe symptoms than seedlings co-inoculated or inoculated only with P. xcambivora or P. parvispora. However, 30 days post-inoculation (dpi), all inoculated seedlings, including those inoculated only with F. circinatum, showed severe symptoms with no significant differences among treatments. The transcriptomic profiles of three genes encoding pathogenesis-related proteins, i.e., chitinase (PR3), thaumatin-like protein (PR5), phenylalanine ammonia-lyase (PAL), and the pyruvate decarboxylase (PDC)-encoding gene were analyzed at various time intervals after inoculation. In seedlings inoculated with single pathogens, F. circinatum stimulated the up-regulation of all genes, while between the two oomycetes, only P. xcambivora induced significant up-regulations. In seedlings co-inoculated with F. circinatum and P.xcambivora or P. parvispora none of the genes showed a significant over-expression 4 dpi. In contrast, at 11 dpi, significant up-regulation was observed for PR5 in the combination F. circinatum/P.xcambivora and PDC in the combination F. circinatum/P. parvispora, thus suggesting a possible synergism of multiple infections in triggering this plant defense mechanism.
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da Silva AR, S Pinto KN, Maserti BE, Santos-Filho HP, Gesteira ADS. Systematic review of defense responses against Phytophthora and strategies to manage Phytophthora diseases in citrus. FUNCTIONAL PLANT BIOLOGY : FPB 2021; 48:963-972. [PMID: 34127178 DOI: 10.1071/fp20349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Accepted: 05/20/2021] [Indexed: 06/12/2023]
Abstract
Phytophthora spp. are the causal agents of gummosis or foot rot, fibrous root rot, and fruit brown rot diseases that affect the roots, trunk, and fruits of citrus trees, causing severe economic losses. This work presents an updated systematic review addressing the defence responses in citrus against Phytophthora and the strategies to manage Phytophthora diseases. Applying a new method of search based on an explicit, rigorous, and transparent methodology. For this purpose, a systematic literature review was conducted using the databases available for academic research. The main plant defence mechanisms reported in the cited papers are the hypersensitivity response, cell wall reinforcement, production of pathogenesis-related proteins, and expression of defence-related genes. Moreover, the main strategies to manage Phytophthora root rot are organic compounds in the soil and biological control with fungi and bacteria. In addition, inhibition of Phytophthora gummosis or canker by applying new oomycota fungicides and reducing the incidence of brown fruit rot through the application of potassium phosphite have also been reported. Moreover, modern plant biotechnology techniques can help to accelerate the selection of resistant rootstocks in breeding programs, as controlled crossings for the generation of hybrids, somatic hybridisation, transgenic citrus plants, mapped genomic regions of Quantitative Trait Loci (QTLs), candidate genes, metabolic markers and comparative transcriptomic. These innovative techniques represent a suitable tool to breed new Phytophthora resistant rootstocks, which is widely recognised as the best strategy to face gummosis or foot rot, fibrous root rot and ultimately minimise the expensive use of pesticides in crop protection.
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Affiliation(s)
- Adielle R da Silva
- Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Campus Soane Nazaré de Andrade, Rodovia Jorge Amado, km 16, 45662-900, Ilhéus, BA, Brazil
| | - Kaliane N S Pinto
- Departamento de Ciências Agrárias, Universidade Federal do Recôncavo da Bahia, Cruz das Almas, Bahia 44380-000, Brazil
| | - Bianca E Maserti
- Consiglio Nazionale delle Ricerche, Institute of Biophysics, Via S. Lorenzo, I-56100 Pisa, Italy
| | | | - Abelmon da S Gesteira
- Embrapa Mandioca e Fruticultura. Cruz das Almas, Bahia 44380-000, Brazil; and Corresponding author.
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Dalio RJD, Maximo HJ, Roma-Almeida R, Barretta JN, José EM, Vitti AJ, Blachinsky D, Reuveni M, Pascholati SF. Tea Tree Oil Induces Systemic Resistance against Fusarium wilt in Banana and Xanthomonas Infection in Tomato Plants. PLANTS 2020; 9:plants9091137. [PMID: 32887438 PMCID: PMC7570017 DOI: 10.3390/plants9091137] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Revised: 08/25/2020] [Accepted: 08/25/2020] [Indexed: 01/23/2023]
Abstract
The essential tea tree oil (TTO) derived from Melaleuca alternifolia plant is widely used as a biopesticide to protect crops from several plant-pathogens. Its activity raised queries regarding its ability to, not only act as a bio-fungicide or bio-bactericide, but also systemically inducing resistance in plants. This was examined by TTO application to banana plants challenged by Fusarium oxysporum f. sp. cubense (Foc, Race 1) causing Fusarium wilt and to tomato plants challenged by Xanthomonas campestris. Parameters to assess resistance induction included: disease development, enzymatic activity, defense genes expression correlated to systemic acquired resistance (SAR) and induced systemic resistance (ISR) and priming effect. Spraying TTO on field-grown banana plants infected with Foc and greenhouse tomato plants infected with Xanthomonas campestris led to resistance induction in both hosts. Several marker genes of salicylic acid, jasmonic acid and ethylene pathways were significantly up-regulated in parallel with symptoms reduction. For tomato plants, we have also recorded a priming effect following TTO treatment. In addition to fungicidal and bactericidal effect, TTO can be applied in more sustainable strategies to control diseases by enhancing the plants ability to defend themselves against pathogens and ultimately diminish chemical pesticides applications.
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Affiliation(s)
- Ronaldo J. D. Dalio
- Departament of Plant Pathology and Nematology, University of São Paulo (USP/Esalq), Piracicaba 13400-900, Brazil; (R.J.D.D.); (H.J.M.); (R.R.-A.); (J.N.B.)
| | - Heros J. Maximo
- Departament of Plant Pathology and Nematology, University of São Paulo (USP/Esalq), Piracicaba 13400-900, Brazil; (R.J.D.D.); (H.J.M.); (R.R.-A.); (J.N.B.)
| | - Rafaela Roma-Almeida
- Departament of Plant Pathology and Nematology, University of São Paulo (USP/Esalq), Piracicaba 13400-900, Brazil; (R.J.D.D.); (H.J.M.); (R.R.-A.); (J.N.B.)
| | - Janaína N. Barretta
- Departament of Plant Pathology and Nematology, University of São Paulo (USP/Esalq), Piracicaba 13400-900, Brazil; (R.J.D.D.); (H.J.M.); (R.R.-A.); (J.N.B.)
| | - Eric M. José
- STK Bio-Ag Technologies Ltd., Petah Tikva 4922297, Israel; (E.M.J.); (A.J.V.); (D.B.); (M.R.)
| | - Agnelo J. Vitti
- STK Bio-Ag Technologies Ltd., Petah Tikva 4922297, Israel; (E.M.J.); (A.J.V.); (D.B.); (M.R.)
| | - Daphna Blachinsky
- STK Bio-Ag Technologies Ltd., Petah Tikva 4922297, Israel; (E.M.J.); (A.J.V.); (D.B.); (M.R.)
| | - Moshe Reuveni
- STK Bio-Ag Technologies Ltd., Petah Tikva 4922297, Israel; (E.M.J.); (A.J.V.); (D.B.); (M.R.)
- Shamir Research Institute, University of Haifa, Katzrin 12900, Israel
| | - Sérgio F. Pascholati
- Departament of Plant Pathology and Nematology, University of São Paulo (USP/Esalq), Piracicaba 13400-900, Brazil; (R.J.D.D.); (H.J.M.); (R.R.-A.); (J.N.B.)
- Correspondence:
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Kawahara Y, Endo T, Omura M, Teramoto Y, Itoh T, Fujii H, Shimada T. Mikan Genome Database (MiGD): integrated database of genome annotation, genomic diversity, and CAPS marker information for mandarin molecular breeding. BREEDING SCIENCE 2020; 70:200-211. [PMID: 32523402 PMCID: PMC7272249 DOI: 10.1270/jsbbs.19097] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Accepted: 10/16/2019] [Indexed: 06/11/2023]
Abstract
Citrus species are some of the most valuable and widely consumed fruits globally. The genome sequences of representative citrus (e.g., Citrus clementina, C. sinensis, C. grandis) species have been released but the research base for mandarin molecular breeding is still poor. We assembled the genomes of Citrus unshiu and Poncirus trifoliata, two important species for citrus industry in Japan, using hybrid de novo assembly of Illumina and PacBio sequence data, and developed the Mikan Genome Database (MiGD). The assembled genome sizes of C. unshiu and P. trifoliata are 346 and 292 Mb, respectively, similar to those of citrus species in public databases; they are predicted to possess 41,489 and 34,333 protein-coding genes in their draft genome sequences, with 9,642 and 8,377 specific genes when compared to C. clementina, respectively. MiGD is an integrated database of genome annotation, genetic diversity, and Cleaved Amplified Polymorphic Sequence (CAPS) marker information, with these contents being mutually linked by genes. MiGD facilitates access to genome sequences of interest from previously reported linkage maps through CAPS markers and obtains polymorphism information through the multiple genome browser TASUKE. The genomic resources in MiGD (https://mikan.dna.affrc.go.jp) could provide valuable information for mandarin molecular breeding in Japan.
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Affiliation(s)
- Yoshihiro Kawahara
- National Agriculture and Food Research Organization Advanced Analysis Center, Tsukuba, Ibaraki 305-8602, Japan
- National Agriculture and Food Research Organization Institute of Crop Science, Tsukuba, Ibaraki 305-8518, Japan
| | - Tomoko Endo
- National Agriculture and Food Research Organization Institute of Fruit and Tea Tree Science, Shimizu, Shizuoka 424-0292, Japan
| | - Mitsuo Omura
- Faculty of Agriculture, Shizuoka University, Suruga, Shizuoka 422-8529, Japan
| | - Yumiko Teramoto
- IMSBIO Co., Ltd., Owl Tower 6F, 4-21-1, Higashi-ikebukuro, Toshima-ku, Tokyo 170-0013, Japan
| | - Takeshi Itoh
- National Agriculture and Food Research Organization Advanced Analysis Center, Tsukuba, Ibaraki 305-8602, Japan
| | - Hiroshi Fujii
- National Agriculture and Food Research Organization Institute of Fruit and Tea Tree Science, Shimizu, Shizuoka 424-0292, Japan
| | - Takehiko Shimada
- National Agriculture and Food Research Organization Institute of Fruit and Tea Tree Science, Shimizu, Shizuoka 424-0292, Japan
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La Spada F, Stracquadanio C, Riolo M, Pane A, Cacciola SO. Trichoderma Counteracts the Challenge of Phytophthora nicotianae Infections on Tomato by Modulating Plant Defense Mechanisms and the Expression of Crinkler, Necrosis-Inducing Phytophthora Protein 1, and Cellulose-Binding Elicitor Lectin Pathogenic Effectors. FRONTIERS IN PLANT SCIENCE 2020; 11:583539. [PMID: 33250912 PMCID: PMC7672019 DOI: 10.3389/fpls.2020.583539] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 10/06/2020] [Indexed: 05/04/2023]
Abstract
Decoding the mechanisms of plant defense against plant pathogens in a scenario where antagonistic activity and the plant growth-promoting effects of useful organisms intervene simultaneously is a new frontier of plant pathology. Here, we demonstrated that (i) two selected strains of Trichoderma asperellum and Trichoderma atroviride promoted tomato (Solanum lycopersicum) growth and reduced the severity of disease caused by the oomycete Phytophthora nicotianae and (ii) the genetic patterns of the components of the experimental model system tomato-Trichoderma spp.-P. nicotianae were differentially expressed. The beneficial effects in both the promotion of the growth of host plant and the biological control of the pathogen by two selected strains of different Trichoderma species were tested both in planta and in vitro. In both respects, T. atroviride demonstrated to be more effective than T. asperellum. Additionally, the simultaneous transcriptional reprogramming of several plant defense-related genes, pathogen effectors, and mycoparasitism-related genes in tomato, P. nicotianae, and Trichoderma spp., respectively, was evaluated during the three-component interaction. Results support the hypothesis that Trichoderma spp. elicit the expression of plant defense-related genes. As expected, a mycoparasitism-related gene was significantly up-regulated in Trichoderma-colonizing tomato plants infected by P. nicotianae. Finally, a marked up-regulation of the genes encoding two necrosis-inducing effectors was observed in P. nicotianae infecting tomato plants colonized by Trichoderma. In conclusion, this study is a contribution toward understanding the genetic pathways related with the ability of Trichoderma spp. to counteract the challenge of P. nicotianae infections on tomato. Additionally, the experiments revealed the beneficial effects in the tomato growth promotion of a new T. atroviride strain and its good antagonistic effectiveness in the biological control of root and crown rot incited by P. nicotianae, confirming that Trichoderma spp. can be a powerful tool in integrated pest management strategies of Phytophthora diseases of horticultural crops.
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Affiliation(s)
- Federico La Spada
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Catania, Italy
| | - Claudia Stracquadanio
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Catania, Italy
- Department of Agriculture, University Mediterranea of Reggio Calabria, Reggio Calabria, Italy
| | - Mario Riolo
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Catania, Italy
- Department of Agriculture, University Mediterranea of Reggio Calabria, Reggio Calabria, Italy
- Council for Agricultural Research and Agricultural Economy Analysis, Research Centre for Olive, Citrus and Tree Fruit-Rende CS (CREA-OFA), Rende, Italy
| | - Antonella Pane
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Catania, Italy
- *Correspondence: Antonella Pane,
| | - Santa Olga Cacciola
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Catania, Italy
- Santa Olga Cacciola,
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Maximo HJ, Dalio RJD, Dias RO, Litholdo CG, Felizatti HL, Machado MA. PpCRN7 and PpCRN20 of Phythophthora parasitica regulate plant cell death leading to enhancement of host susceptibility. BMC PLANT BIOLOGY 2019; 19:544. [PMID: 31810451 PMCID: PMC6896422 DOI: 10.1186/s12870-019-2129-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2018] [Accepted: 11/08/2019] [Indexed: 05/27/2023]
Abstract
BACKGROUND Phytophthora species secrete cytoplasmic effectors from a family named Crinkler (CRN), which are characterised by the presence of conserved specific domains in the N- and C-terminal regions. P. parasitica causes disease in a wide range of host plants, however the role of CRN effectors in these interactions remains unclear. Here, we aimed to: (i) identify candidate CRN encoding genes in P. parasitica genomes; (ii) evaluate the transcriptional expression of PpCRN (Phytophthora parasitica Crinkler candidate) during the P. parasitica interaction with Citrus sunki (high susceptible) and Poncirus trifoliata (resistant); and (iii) functionally characterize two PpCRNs in the model plant Nicotiana benthamiana. RESULTS Our in silico analyses identified 80 putative PpCRN effectors in the genome of P. parasitica isolate 'IAC 01/95.1'. Transcriptional analysis revealed differential gene expression of 20 PpCRN candidates during the interaction with the susceptible Citrus sunki and the resistant Poncirus trifoliata. We have also found that P. parasitica is able to recognize different citrus hosts and accordingly modulates PpCRNs expression. Additionally, two PpCRN effectors, namely PpCRN7 and PpCRN20, were further characterized via transient gene expression in N. benthamiana leaves. The elicitin INF-1-induced Hypersensitivity Response (HR) was increased by an additive effect driven by PpCRN7 expression, whereas PpCRN20 expression suppressed HR response in N. benthamiana leaves. Despite contrasting functions related to HR, both effectors increased the susceptibility of plants to P. parasitica. CONCLUSIONS PpCRN7 and PpCRN20 have the ability to increase P. parasitica pathogenicity and may play important roles at different stages of infection. These PpCRN-associated mechanisms are now targets of biotechnological studies aiming to break pathogen's virulence and to promote plant resistance.
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Affiliation(s)
- Heros J. Maximo
- Biotechnology Laboratory, Centro de Citricultura Sylvio Moreira/Instituto Agronômico (IAC), Cordeirópolis, SP Brazil
| | - Ronaldo J. D. Dalio
- Biotechnology Laboratory, Centro de Citricultura Sylvio Moreira/Instituto Agronômico (IAC), Cordeirópolis, SP Brazil
| | - Renata O. Dias
- Instituto de Química, Universidade de São Paulo (USP), São Paulo, SP Brazil
| | - Celso G. Litholdo
- Biotechnology Laboratory, Centro de Citricultura Sylvio Moreira/Instituto Agronômico (IAC), Cordeirópolis, SP Brazil
| | - Henrique L. Felizatti
- Instituto de Matemática, Física e Computação Científica, Universidade Estadual de Campinas (UNICAMP), Campinas, SP Brazil
| | - Marcos A. Machado
- Biotechnology Laboratory, Centro de Citricultura Sylvio Moreira/Instituto Agronômico (IAC), Cordeirópolis, SP Brazil
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9
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Lima RPM, Curtolo M, Merfa MV, Cristofani-Yaly M, Machado MA. QTLs and eQTLs mapping related to citrandarins' resistance to citrus gummosis disease. BMC Genomics 2018; 19:516. [PMID: 29969985 PMCID: PMC6031180 DOI: 10.1186/s12864-018-4888-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Accepted: 06/19/2018] [Indexed: 11/10/2022] Open
Abstract
Background Phytophthora nicotianae Breda de Haan (Phytophthora parasitica Dastur) causes severe damage to citrus crops worldwide. A population of citrandarins was created from the cross between the susceptible parent Citrus sunki Hort. Ex Tan. and the resistant parent Poncirus trifoliata (L.) Raf. cv. Rubidoux, both parents and two reference rootstocks (Rangpur lime and Swingle citrumelo) were grafted in a greenhouse on Rangpur lime. Inoculations were performed at 10 cm and 15 cm above the grafting region and the resulting lesions were evaluated by measuring the lesion length 60 days after inoculation. As control, non-inoculated plants of each genotype were used. In addition, we evaluated the expression of 19 candidate genes involved in citrus defense response 48 h after pathogen infection by quantitative Real-Time PCR (qPCR). We mapped genomic regions of Quantitative Trait Loci (QTLs) and Expression Quantitative Trait Loci (eQTLs) associated with resistance to P. parasitica in the linkage groups (LGs) of the previously constructed maps of C. sunki and P. trifoliata. Results We found disease severity differences among the generated hybrids, with lesion lengths varying from 1.15 to 11.13 mm. The heritability of the character was 65%. These results indicate that there is a great possibility of success in the selection of resistant hybrids within this experiment. The analysis of gene expression profile demonstrated a great variation of responses regarding the activation of plant defense pathways, indicating that citrandarins have several defense strategies to control oomycete infection. The information of the phenotypic and gene expression data made possible to detect genomic regions associated with resistance. Three QTLs and 84 eQTLs were detected in the linkage map of P. trifoliata, while one QTL and 110 eQTLs were detected in C. sunki. Conclusions This is the first study to use eQTLs mapping in the Phytophthora-citrus interaction. Our results from the QTLs and eQTLs mapping allow us to conclude that the resistance of some citrandarins to the infection by P. parasitica is due to a favorable combination of QTLs and eQTLs transmitted by both parents. Electronic supplementary material The online version of this article (10.1186/s12864-018-4888-2) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Rômulo P M Lima
- Centro APTA Citros Sylvio Moreira, Centro de Citricultura Sylvio Moreira, Instituto Agronômico (IAC), CP 04, Cordeirópolis, SP, 13490-970, Brazil.,Departamento de Genética, Instituto de Biociências, UNESP, Caixa Postal 510, CEP, Botucatu, SP, 18618-000, Brazil
| | - Maiara Curtolo
- Centro APTA Citros Sylvio Moreira, Centro de Citricultura Sylvio Moreira, Instituto Agronômico (IAC), CP 04, Cordeirópolis, SP, 13490-970, Brazil
| | - Marcus V Merfa
- Centro APTA Citros Sylvio Moreira, Centro de Citricultura Sylvio Moreira, Instituto Agronômico (IAC), CP 04, Cordeirópolis, SP, 13490-970, Brazil.,Department of Entomology and Plant Pathology, Auburn University, Auburn, AL, 36849, USA
| | - Mariângela Cristofani-Yaly
- Centro APTA Citros Sylvio Moreira, Centro de Citricultura Sylvio Moreira, Instituto Agronômico (IAC), CP 04, Cordeirópolis, SP, 13490-970, Brazil.
| | - Marcos A Machado
- Centro APTA Citros Sylvio Moreira, Centro de Citricultura Sylvio Moreira, Instituto Agronômico (IAC), CP 04, Cordeirópolis, SP, 13490-970, Brazil
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