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Mäkinen K, Aspelin W, Pollari M, Wang L. How do they do it? The infection biology of potyviruses. Adv Virus Res 2023; 117:1-79. [PMID: 37832990 DOI: 10.1016/bs.aivir.2023.07.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2023]
Affiliation(s)
- Kristiina Mäkinen
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland.
| | - William Aspelin
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Maija Pollari
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Linping Wang
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
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2
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Zhang J, Liu N, Yan A, Sun T, Sun X, Yao G, Xiao D, Li W, Hou C, Yang C, Wang D. Callose deposited at soybean sieve element inhibits long-distance transport of Soybean mosaic virus. AMB Express 2022; 12:66. [PMID: 35660979 PMCID: PMC9167352 DOI: 10.1186/s13568-022-01402-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 05/11/2022] [Indexed: 11/24/2022] Open
Abstract
The function of callose and its deposition characteristics at phloem in the resistance to the long-distance transportation of Soybean mosaic virus (SMV) through phloem was studied. Two different methods of SMV inoculation were used in the study, one was direct friction of the virus on seedling leaves and the other was based on grafting scion and rootstock to create different resistance and sensitivity combinations. Veins, petioles of inoculated leaves and rootstock stems were stained with callose specific dye. Results from fluorescence microscope observation, pharmacological test, and PCR detection of SMV coat protein gene (SMV-CP) showed the role of callose in long-distance transportation of SMV through phloem during infection of soybean seedlings. When the inhibitor of callose synthesis 2-deoxy-D-glucose (2-DDG) was used, the accumulation of callose fluorescence could hardly be detected in the resistant rootstocks. These results indicate that callose deposition in phloem restricts the long-distance transport of SMV, and that the accumulation of callose in phloem is a main contributing factor for resistance to this virus in soybean.
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Affiliation(s)
- Jie Zhang
- State Key Laboratory of North China Crop Improvement and Regulation/ Hebei Key Laboratory of Plant Physiology and Molecular Pathology/College of Life Sciences, Hebei Agricultural University, Baoding, 071001 China
| | - Na Liu
- State Key Laboratory of North China Crop Improvement and Regulation/ Hebei Key Laboratory of Plant Physiology and Molecular Pathology/College of Life Sciences, Hebei Agricultural University, Baoding, 071001 China
| | - Aihua Yan
- State Key Laboratory of North China Crop Improvement and Regulation/ Hebei Key Laboratory of Plant Physiology and Molecular Pathology/College of Life Sciences, Hebei Agricultural University, Baoding, 071001 China
| | - Tianjie Sun
- State Key Laboratory of North China Crop Improvement and Regulation/ Hebei Key Laboratory of Plant Physiology and Molecular Pathology/College of Life Sciences, Hebei Agricultural University, Baoding, 071001 China
| | - Xizhe Sun
- State Key Laboratory of North China Crop Improvement and Regulation/ Hebei Key Laboratory of Plant Physiology and Molecular Pathology/College of Life Sciences, Hebei Agricultural University, Baoding, 071001 China
| | - Guibin Yao
- State Key Laboratory of North China Crop Improvement and Regulation/ Hebei Key Laboratory of Plant Physiology and Molecular Pathology/College of Life Sciences, Hebei Agricultural University, Baoding, 071001 China
| | - Dongqiang Xiao
- State Key Laboratory of North China Crop Improvement and Regulation/ Hebei Key Laboratory of Plant Physiology and Molecular Pathology/College of Life Sciences, Hebei Agricultural University, Baoding, 071001 China
| | - Wenlong Li
- State Key Laboratory of North China Crop Improvement and Regulation/ Hebei Key Laboratory of Plant Physiology and Molecular Pathology/College of Life Sciences, Hebei Agricultural University, Baoding, 071001 China
| | - Chunyan Hou
- State Key Laboratory of North China Crop Improvement and Regulation/ Hebei Key Laboratory of Plant Physiology and Molecular Pathology/College of Life Sciences, Hebei Agricultural University, Baoding, 071001 China
| | - Chunyan Yang
- Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang, 050035 China
| | - Dongmei Wang
- State Key Laboratory of North China Crop Improvement and Regulation/ Hebei Key Laboratory of Plant Physiology and Molecular Pathology/College of Life Sciences, Hebei Agricultural University, Baoding, 071001 China
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3
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Simkovich A, Kohalmi SE, Wang A. Purification and Proteomics Analysis of Phloem Tissues from Virus-Infected Plants. Methods Mol Biol 2022; 2400:125-137. [PMID: 34905197 DOI: 10.1007/978-1-0716-1835-6_13] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The plant phloem vasculature is crucial for plant growth and development, and is essential for the systemic movement (SM) of plant viruses. Recent transcriptomic studies of the phloem during virus infection have shown the importance of this tissue, yet transcript levels do not provide definitive answers how virus-host interactions favour successful viral SM. Proteomic analyses have been used to identify host-virus protein interactions, uncovering a variety of ways by which viruses utilize host cellular machinery for completion of the viral infection cycle. Despite this new evidence through proteomics, very few phloem centric studies during viral infection have been performed. Here, we describe a protocol for the isolation of phloem tissues and proteins and the subsequent label-free quantitation (LFQ), for identification of proteomic alterations caused by viral infection.
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Affiliation(s)
- Aaron Simkovich
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada
- Department of Biology, The University of Western Ontario, London, ON, Canada
| | - Susanne E Kohalmi
- Department of Biology, The University of Western Ontario, London, ON, Canada
| | - Aiming Wang
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON, Canada.
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Collum TD, Stone AL, Sherman DJ, Damsteegt VD, Schneider WL, Rogers EE. Viral Reservoir Capacity of Wild Prunus Alternative Hosts of Plum Pox Virus Through Multiple Cycles of Transmission and Dormancy. PLANT DISEASE 2022; 106:101-106. [PMID: 34293916 DOI: 10.1094/pdis-04-21-0802-re] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Plum pox virus (PPV) is a significant pathogen of Prunus worldwide and is known for having a broad experimental host range. Many of these hosts represent epidemiological risks as potential wild viral reservoirs. A comparative study of the PPV reservoir capacity of three commonly found native North American species, western choke cherry (Prunus virginiana var. demissa), black cherry (Prunus serotina), and American plum (Prunus americana) was conducted. Pennsylvania isolates of PPV-D were transmitted from the original host peach (Prunus persica cv. GF305) to all three species. Viral accumulation and transmission rates to alternative hosts and peach were monitored over the course of five vegetative growth and cold induced dormancy (CID) cycles. The three alternative host species demonstrated differences in their ability to maintain PPV-D and the likelihood of transmission to additional alternative hosts or back transmission to peach. Western choke cherry had low (5.8%) initial infection levels, PPV-D was not transmissible to additional western choke cherry, and transmission of PPV-D from western choke cherry to peach was only possible before the first CID cycle. Black cherry had intermediate initial infection levels (26.6%) but did not maintain high infection levels after repeated CID cycles. Conversely, American plum had a high level (50%) of initial infection that was not significantly different from initial infection in peach (72.2%) and maintained moderate levels (15 to 25%) of infection and PPV-D transmission to both American plum and peach through all five cycles of CID. Our results indicate that American plum has the greatest potential to act as a reservoir host for Pennsylvania isolates of PPV-D.
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Affiliation(s)
- Tamara D Collum
- Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Frederick, MD 21702
| | - Andrew L Stone
- Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Frederick, MD 21702
| | - Diana J Sherman
- Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Frederick, MD 21702
| | - Vernon D Damsteegt
- Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Frederick, MD 21702
| | - William L Schneider
- Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Frederick, MD 21702
| | - Elizabeth E Rogers
- Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Frederick, MD 21702
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5
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Abstract
The NIa protease of potyviruses is a chymotrypsin-like cysteine protease related to the picornavirus 3C protease. It is also a multifunctional protein known to play multiple roles during virus infection. Picornavirus 3C proteases cleave hundreds of host proteins to facilitate virus infection. However, whether or not potyvirus NIa proteases cleave plant proteins has so far not been tested. Regular expression search using the cleavage site consensus sequence [EQN]xVxH[QE]/[SGTA] for the plum pox virus (PPV) protease identified 90 to 94 putative cleavage events in the proteomes of Prunus persica (a crop severely affected by PPV), Arabidopsis thaliana, and Nicotiana benthamiana (two experimental hosts). In vitro processing assays confirmed cleavage of six A. thaliana and five P. persica proteins by the PPV protease. These proteins were also cleaved in vitro by the protease of turnip mosaic virus (TuMV), which has a similar specificity. We confirmed in vivo cleavage of a transiently expressed tagged version of AtEML2, an EMSY-like protein belonging to a family of nuclear histone readers known to be involved in pathogen resistance. Cleavage of AtEML2 was efficient and was observed in plants that coexpressed the PPV or TuMV NIa proteases or in plants that were infected with TuMV. We also showed partial in vivo cleavage of AtDUF707, a membrane protein annotated as lysine ketoglutarate reductase trans-splicing protein. Although cleavage of the corresponding endogenous plant proteins remains to be confirmed, the results show that a plant virus protease can cleave host proteins during virus infection and highlight a new layer of plant-virus interactions. IMPORTANCE Viruses are highly adaptive and use multiple molecular mechanisms to highjack or modify the cellular resources to their advantage. They must also counteract or evade host defense responses. One well-characterized mechanism used by vertebrate viruses is the proteolytic cleavage of host proteins to inhibit the activities of these proteins and/or to produce cleaved protein fragments that are beneficial to the virus infection cycle. Even though almost half of the known plant viruses encode at least one protease, it was not known whether plant viruses employ this strategy. Using an in silico prediction approach and the well-characterized specificity of potyvirus NIa proteases, we were able to identify hundreds of putative cleavage sites in plant proteins, several of which were validated by downstream experiments. It can be anticipated that many other plant virus proteases also cleave host proteins and that the identification of these cleavage events will lead to novel antiviral strategies.
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Tarquini G, Pagliari L, Ermacora P, Musetti R, Firrao G. Trigger and Suppression of Antiviral Defenses by Grapevine Pinot Gris Virus (GPGV): Novel Insights into Virus-Host Interaction. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2021; 34:1010-1023. [PMID: 33983824 DOI: 10.1094/mpmi-04-21-0078-r] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Grapevine Pinot gris virus (GPGV) is an emerging trichovirus that has been putatively associated with a novel grapevine disease known as grapevine leaf mottling and deformation (GLMD). Yet the role of GPGV in GLMD disease is poorly understood, since it has been detected both in symptomatic and symptomless grapevines. We exploited a recently constructed GPGV infectious clone (pRI::GPGV-vir) to induce an antiviral response in Nicotiana benthamiana plants. In silico prediction of virus-derived small interfering RNAs and gene expression analyses revealed the involvement of DCL4, AGO5, and RDR6 genes during GPGV infection, suggesting the activation of the posttranscriptional gene-silencing (PTGS) pathway as a plant antiviral defense. PTGS suppression assays in transgenic N. benthamiana 16c plants revealed the ability of the GPGV coat protein to suppress RNA silencing. This work provides novel insights on the interaction between GPGV and its host, revealing the ability of the virus to trigger and suppress antiviral RNA silencing.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Giulia Tarquini
- Department of Agriculture, Food, Environmental and Animal Sciences, University of Udine, Udine I-33100, Italy
| | - Laura Pagliari
- Department of Agriculture, Food, Environmental and Animal Sciences, University of Udine, Udine I-33100, Italy
| | - Paolo Ermacora
- Department of Agriculture, Food, Environmental and Animal Sciences, University of Udine, Udine I-33100, Italy
| | - Rita Musetti
- Department of Agriculture, Food, Environmental and Animal Sciences, University of Udine, Udine I-33100, Italy
| | - Giuseppe Firrao
- Department of Agriculture, Food, Environmental and Animal Sciences, University of Udine, Udine I-33100, Italy
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Espinoza C, Bascou B, Calvayrac C, Bertrand C. Deciphering Prunus Responses to PPV Infection: A Way toward the Use of Metabolomics Approach for the Diagnostic of Sharka Disease. Metabolites 2021; 11:metabo11070465. [PMID: 34357359 PMCID: PMC8307365 DOI: 10.3390/metabo11070465] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 07/09/2021] [Accepted: 07/14/2021] [Indexed: 11/23/2022] Open
Abstract
Sharka disease, caused by Plum pox virus (PPV), induces several changes in Prunus. In leaf tissues, the infection may cause oxidative stress and disrupt the photosynthetic process. Moreover, several defense responses can be activated after PPV infection and have been detected at the phytohormonal, transcriptomic, proteomic, and even translatome levels. As proposed in this review, some responses may be systemic and earlier to the onset of symptoms. Nevertheless, these changes are highly dependent among species, variety, sensitivity, and tissue type. In the case of fruit tissues, PPV infection can modify the ripening process, induced by an alteration of the primary metabolism, including sugars and organic acids, and secondary metabolism, including phenolic compounds. Interestingly, metabolomics is an emerging tool to better understand Prunus–PPV interactions mainly in primary and secondary metabolisms. Moreover, through untargeted metabolomics analyses, specific and early candidate biomarkers of PPV infection can be detected. Nevertheless, these candidate biomarkers need to be validated before being selected for a diagnostic or prognosis by targeted analyses. The development of a new method for early detection of PPV-infected trees would be crucial for better management of the outbreak, especially since there is no curative treatment.
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Affiliation(s)
- Christian Espinoza
- PSL Université de Paris EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan Via Domitia, 52 Avenue Paul Alduy, CEDEX, 66860 Perpignan, France; (C.E.); (B.B.)
- S.A.S. AkiNaO, Université de Perpignan Via Domitia, 52 Avenue Paul Alduy, CEDEX, 66860 Perpignan, France
| | - Benoît Bascou
- PSL Université de Paris EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan Via Domitia, 52 Avenue Paul Alduy, CEDEX, 66860 Perpignan, France; (C.E.); (B.B.)
| | - Christophe Calvayrac
- Biocapteurs-Analyses-Environnement, Université de Perpignan Via Domitia, 52 Avenue Paul Alduy, CEDEX, 66860 Perpignan, France;
- Laboratoire de Biodiversité et Biotechnologies Microbiennes, USR 3579 Sorbonne Universités (UMPC) Paris 6 et CNRS, Observatoire Océanologique, Banyuls-sur-Mer, CEDEX, 75005 Paris, France
| | - Cédric Bertrand
- PSL Université de Paris EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan Via Domitia, 52 Avenue Paul Alduy, CEDEX, 66860 Perpignan, France; (C.E.); (B.B.)
- S.A.S. AkiNaO, Université de Perpignan Via Domitia, 52 Avenue Paul Alduy, CEDEX, 66860 Perpignan, France
- Correspondence: ; Tel.: +33-(0)4-6866-2258
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8
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Gene Expression Analysis of Induced Plum pox virus (Sharka) Resistance in Peach ( Prunus persica) by Almond ( P. dulcis) Grafting. Int J Mol Sci 2021; 22:ijms22073585. [PMID: 33808287 PMCID: PMC8036523 DOI: 10.3390/ijms22073585] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Revised: 03/22/2021] [Accepted: 03/25/2021] [Indexed: 02/06/2023] Open
Abstract
No natural sources of resistance to Plum pox virus (PPV, sharka disease) have been identified in peach. However, previous studies have demonstrated that grafting a “Garrigues” almond scion onto “GF305” peach rootstock seedlings heavily infected with PPV can progressively reduce disease symptoms and virus accumulation. Furthermore, grafting a “Garrigues” scion onto the “GF305” rootstock has been shown to completely prevent virus infection. This study aims to analyse the rewiring of gene expression associated with this resistance to PPV transmitted by grafting through the phloem using RNA-Seq and RT-qPCR analysis. A total of 18 candidate genes were differentially expressed after grafting “Garrigues” almond onto healthy “GF305” peach. Among the up-regulated genes, a HEN1 homolog stands out, which, together with the differential expression of RDR- and DCL2-homologs, suggests that the RNA silencing machinery is activated by PPV infection and can contribute to the resistance induced by “Garrigues” almond. Glucan endo-1,3-beta D-glucosidase could be also relevant for the “Garrigues”-induced response, since its expression is much higher in “Garrigues” than in “GF305”. We also discuss the potential relevance of the following in PPV infection and “Garrigues”-induced resistance: several pathogenesis-related proteins; no apical meristem proteins; the transcription initiation factor, TFIIB; the speckle-type POZ protein; in addition to a number of proteins involved in phytohormone signalling.
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Callahan AM, Zhebentyayeva TN, Humann JL, Saski CA, Galimba KD, Georgi LL, Scorza R, Main D, Dardick CD. Defining the 'HoneySweet' insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica). HORTICULTURE RESEARCH 2021; 8:8. [PMID: 33384410 PMCID: PMC7775438 DOI: 10.1038/s41438-020-00438-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 09/30/2020] [Accepted: 10/08/2020] [Indexed: 05/30/2023]
Abstract
'HoneySweet' plum (Prunus domestica) is resistant to Plum pox potyvirus, through an RNAi-triggered mechanism. Determining the precise nature of the transgene insertion event has been complicated due to the hexaploid genome of plum. DNA blots previously indicated an unintended hairpin arrangement of the Plum pox potyvirus coat protein gene as well as a multicopy insertion event. To confirm the transgene arrangement of the insertion event, 'HoneySweet' DNA was subjected to whole genome sequencing using Illumina short-read technology. Results indicated two different insertion events, one containing seven partial copies flanked by putative plum DNA sequence and a second with the predicted inverted repeat of the coat protein gene driven by a double 35S promoter on each side, flanked by plum DNA. To determine the locations of the two transgene insertions, a phased plum genome assembly was developed from the commercial plum 'Improved French'. A subset of the scaffolds (2447) that were >10 kb in length and representing, >95% of the genome were annotated and used for alignment against the 'HoneySweet' transgene reads. Four of eight matching scaffolds spanned both insertion sites ranging from 157,704 to 654,883 bp apart, however we were unable to identify which scaffold(s) represented the actual location of the insertion sites due to potential sequence differences between the two plum cultivars. Regardless, there was no evidence of any gene(s) being interrupted as a result of the insertions. Furthermore, RNA-seq data verified that the insertions created no new transcriptional units and no dramatic expression changes of neighboring genes.
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Affiliation(s)
- Ann M Callahan
- USDA-ARS, Appalachian Fruit Research Station, Kearneysville, WV, 25430, USA.
| | - Tetyana N Zhebentyayeva
- The Schatz Center for Tree Molecular Genetics, Department of Ecosystem Science and Management, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Jodi L Humann
- Department of Horticulture, Washington State University, Pullman, WA, 99164, USA
| | - Christopher A Saski
- Plant and Environmental Sciences Department, Clemson University, Clemson, SC, 29634, USA
| | - Kelsey D Galimba
- USDA-ARS, Appalachian Fruit Research Station, Kearneysville, WV, 25430, USA
| | - Laura L Georgi
- Department of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA
| | - Ralph Scorza
- USDA-ARS, Appalachian Fruit Research Station, Kearneysville, WV, 25430, USA
| | - Dorrie Main
- Plant and Environmental Sciences Department, Clemson University, Clemson, SC, 29634, USA
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Urquidi-Camacho RA, Lokdarshi A, von Arnim AG. Translational gene regulation in plants: A green new deal. WILEY INTERDISCIPLINARY REVIEWS. RNA 2020; 11:e1597. [PMID: 32367681 PMCID: PMC9258721 DOI: 10.1002/wrna.1597] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Revised: 03/31/2020] [Accepted: 04/01/2020] [Indexed: 01/09/2023]
Abstract
The molecular machinery for protein synthesis is profoundly similar between plants and other eukaryotes. Mechanisms of translational gene regulation are embedded into the broader network of RNA-level processes including RNA quality control and RNA turnover. However, over eons of their separate history, plants acquired new components, dropped others, and generally evolved an alternate way of making the parts list of protein synthesis work. Research over the past 5 years has unveiled how plants utilize translational control to defend themselves against viruses, regulate translation in response to metabolites, and reversibly adjust translation to a wide variety of environmental parameters. Moreover, during seed and pollen development plants make use of RNA granules and other translational controls to underpin developmental transitions between quiescent and metabolically active stages. The economics of resource allocation over the daily light-dark cycle also include controls over cellular protein synthesis. Important new insights into translational control on cytosolic ribosomes continue to emerge from studies of translational control mechanisms in viruses. Finally, sketches of coherent signaling pathways that connect external stimuli with a translational response are emerging, anchored in part around TOR and GCN2 kinase signaling networks. These again reveal some mechanisms that are familiar and others that are different from other eukaryotes, motivating deeper studies on translational control in plants. This article is categorized under: Translation > Translation Regulation RNA Structure and Dynamics > Influence of RNA Structure in Biological Systems RNA Interactions with Proteins and Other Molecules > Protein-RNA Interactions: Functional Implications.
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Affiliation(s)
- Ricardo A. Urquidi-Camacho
- UT-ORNL Graduate School of Genome Science and Technology, The University of Tennessee, Knoxville, TN 37996
| | - Ansul Lokdarshi
- Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996
| | - Albrecht G von Arnim
- Department of Biochemistry & Cellular and Molecular Biology and UT-ORNL Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, TN 37996
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11
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Sanfaçon H. Modulation of disease severity by plant positive-strand RNA viruses: The complex interplay of multifunctional viral proteins, subviral RNAs and virus-associated RNAs with plant signaling pathways and defense responses. Adv Virus Res 2020; 107:87-131. [PMID: 32711736 DOI: 10.1016/bs.aivir.2020.04.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Plant viruses induce a range of symptoms of varying intensity, ranging from severe systemic necrosis to mild or asymptomatic infection. Several evolutionary constraints drive virus virulence, including the dependence of viruses on host factors to complete their infection cycle, the requirement to counteract or evade plant antiviral defense responses and the mode of virus transmission. Viruses have developed an array of strategies to modulate disease severity. Accumulating evidence has highlighted not only the multifunctional role that viral proteins play in disrupting or highjacking plant factors, hormone signaling pathways and intracellular organelles, but also the interaction networks between viral proteins, subviral RNAs and/or other viral-associated RNAs that regulate disease severity. This review focusses on positive-strand RNA viruses, which constitute the majority of characterized plant viruses. Using well-characterized viruses with different genome types as examples, recent advances are discussed as well as knowledge gaps and opportunities for further research.
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Affiliation(s)
- Hélène Sanfaçon
- Summerland Research and Development Centre, Agriculture and Agri-Food Canada, Summerland, BC, Canada.
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12
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Tamukong YB, Collum TD, Stone AL, Kappagantu M, Sherman DJ, Rogers EE, Dardick C, Culver JN. Dynamic changes impact the plum pox virus population structure during leaf and bud development. Virology 2020; 548:192-199. [PMID: 32758716 DOI: 10.1016/j.virol.2020.06.014] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Revised: 06/21/2020] [Accepted: 06/22/2020] [Indexed: 10/23/2022]
Abstract
Plum pox virus (PPV) is a worldwide threat to stone fruit production. Its woody perennial hosts provide a dynamic environment for virus evolution over multiple growing seasons. To investigate the impact seasonal host development plays in PPV population structure, next generation sequencing of ribosome associated viral genomes, termed translatome, was used to assess PPV variants derived from phloem or whole leaf tissues over a range of plum leaf and bud developmental stages. Results show that translatome PPV variants occur at proportionately higher levels in bud and newly developing leaf tissues that have low infection levels while more mature tissues with high infection levels display proportionately lower numbers of viral variants. Additional variant analysis identified distinct groups based on population frequency as well as sets of phloem and whole tissue specific variants. Combined, these results indicate PPV population dynamics are impacted by the tissue type and developmental stage of their host.
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Affiliation(s)
- Yvette B Tamukong
- Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA
| | - Tamara D Collum
- Institute for Bioscience and Biotechnology Research, College Park, MD, USA; USDA, Agricultural Research Service, Foreign Disease-Weed Science Research Unit, Frederick, MD, USA
| | - Andrew L Stone
- USDA, Agricultural Research Service, Foreign Disease-Weed Science Research Unit, Frederick, MD, USA
| | - Madhu Kappagantu
- Institute for Bioscience and Biotechnology Research, College Park, MD, USA
| | - Diana J Sherman
- USDA, Agricultural Research Service, Foreign Disease-Weed Science Research Unit, Frederick, MD, USA
| | - Elizabeth E Rogers
- USDA, Agricultural Research Service, Foreign Disease-Weed Science Research Unit, Frederick, MD, USA
| | - Christopher Dardick
- USDA, Agricultural Research Service, Appalachian Fruit Research Station, Kearneysville, WV, USA
| | - James N Culver
- Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA; Institute for Bioscience and Biotechnology Research, College Park, MD, USA.
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13
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Kappagantu M, Collum TD, Dardick C, Culver JN. Viral Hacks of the Plant Vasculature: The Role of Phloem Alterations in Systemic Virus Infection. Annu Rev Virol 2020; 7:351-370. [PMID: 32453971 DOI: 10.1146/annurev-virology-010320-072410] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
For plant viruses, the ability to load into the vascular phloem and spread systemically within a host is an essential step in establishing a successful infection. However, access to the vascular phloem is highly regulated, representing a significant obstacle to virus loading, movement, and subsequent unloading into distal uninfected tissues. Recent studies indicate that during virus infection, phloem tissues are a source of significant transcriptional and translational alterations, with the number of virus-induced differentially expressed genes being four- to sixfold greater in phloem tissues than in surrounding nonphloem tissues. In addition, viruses target phloem-specific components as a means to promote their own systemic movement and disrupt host defense processes. Combined, these studies provide evidence that the vascular phloem plays a significant role in the mediation and control of host responses during infection and as such is a site of considerable modulation by the infecting virus. This review outlines the phloem responses and directed reprograming mechanisms that viruses employ to promote their movement through the vasculature.
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Affiliation(s)
- Madhu Kappagantu
- Institute of Bioscience and Biotechnology Research, University of Maryland, College Park, Maryland 20742, USA;
| | - Tamara D Collum
- Foreign Disease-Weed Science Research Unit, US Department of Agriculture Agricultural Research Service, Frederick, Maryland 21702, USA
| | - Christopher Dardick
- Appalachian Fruit Research Station, US Department of Agriculture Agricultural Research Service, Kearneysville, West Virginia 25430, USA
| | - James N Culver
- Institute of Bioscience and Biotechnology Research, University of Maryland, College Park, Maryland 20742, USA; .,Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland 20742, USA
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14
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Zhang K, Lu H, Wan C, Tang D, Zhao Y, Luo K, Li S, Wang J. The Spread and Transmission of Sweet Potato Virus Disease (SPVD) and Its Effect on the Gene Expression Profile in Sweet Potato. PLANTS 2020; 9:plants9040492. [PMID: 32290324 PMCID: PMC7238082 DOI: 10.3390/plants9040492] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Revised: 03/30/2020] [Accepted: 03/31/2020] [Indexed: 01/22/2023]
Abstract
Sweet potato virus disease (SPVD) is the most devastating viral disease in sweet potato (Ipomoea batatas (L.) Lam.), causing substantial yield losses worldwide. We conducted a systemic investigation on the spread, transmission, and pathogenesis of SPVD. Field experiments conducted over two years on ten sweet potato varieties showed that SPVD symptoms first occurred in newly developed top leaves, and spread from adjacent to distant plants in the field. The SPVD incidence was mainly (but not only) determined by the resistance of the varieties planted, and each variety exhibited a characteristic subset of SPVD symptoms. SPVD was not robustly transmitted through friction inoculation, but friction of the main stem might contribute to a higher SPVD incidence rate compared to friction of the leaf and branch tissues. Furthermore, our results suggested that SPVD might be latent in the storage root. Therefore, using virus-free storage roots and cuttings, purposeful monitoring for SPVD according to variety-specific symptoms, and swiftly removing infected plants (especially during the later growth stages) would help control and prevent SPVD during sweet potato production. Comparative transcriptome analysis revealed that numerous genes involved in photosynthesis, starch and sucrose metabolism, flavonoid biosynthesis, and carotenoid biosynthesis were downregulated following SPVD, whereas those involved in monolignol biosynthesis, zeatin biosynthesis, trehalose metabolism, and linoleic acid metabolism were upregulated. Notably, critical genes involved in pathogenesis and plant defense were significantly induced or suppressed following SPVD. These data provide insights into the molecular changes of sweet potato in response to SPVD and elucidate potential SPVD pathogenesis and defense mechanisms in sweet potato. Our study provides important information that can be used to tailor sustainable SPVD control strategies and guide the molecular breeding of SPVD-resistant sweet potato varieties.
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Affiliation(s)
- Kai Zhang
- College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400715, China; (H.L.); (C.W.); (D.T.); (Y.Z.); (K.L.); (S.L.)
- Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops in Chongqing, Beibei, Chongqing 400715, China
- State Cultivation Base of Crop Stress Biology for Southern Mountainous Land of Southwest University, Beibei, Chongqing 400715, China
- Correspondence: (K.Z.);
(J.W.); Tel.: +86-6825-1264 (K.Z.); +86-6825-1264 (J.W.)
| | - Huixiang Lu
- College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400715, China; (H.L.); (C.W.); (D.T.); (Y.Z.); (K.L.); (S.L.)
- Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops in Chongqing, Beibei, Chongqing 400715, China
- State Cultivation Base of Crop Stress Biology for Southern Mountainous Land of Southwest University, Beibei, Chongqing 400715, China
| | - Chuanfang Wan
- College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400715, China; (H.L.); (C.W.); (D.T.); (Y.Z.); (K.L.); (S.L.)
- Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops in Chongqing, Beibei, Chongqing 400715, China
| | - Daobin Tang
- College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400715, China; (H.L.); (C.W.); (D.T.); (Y.Z.); (K.L.); (S.L.)
- Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops in Chongqing, Beibei, Chongqing 400715, China
- State Cultivation Base of Crop Stress Biology for Southern Mountainous Land of Southwest University, Beibei, Chongqing 400715, China
| | - Yong Zhao
- College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400715, China; (H.L.); (C.W.); (D.T.); (Y.Z.); (K.L.); (S.L.)
- Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops in Chongqing, Beibei, Chongqing 400715, China
- State Cultivation Base of Crop Stress Biology for Southern Mountainous Land of Southwest University, Beibei, Chongqing 400715, China
| | - Kai Luo
- College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400715, China; (H.L.); (C.W.); (D.T.); (Y.Z.); (K.L.); (S.L.)
- The Agricultural Science Research Institute of Liupanshui, Guizhou 553001, China
| | - Shixi Li
- College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400715, China; (H.L.); (C.W.); (D.T.); (Y.Z.); (K.L.); (S.L.)
- Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops in Chongqing, Beibei, Chongqing 400715, China
| | - Jichun Wang
- College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400715, China; (H.L.); (C.W.); (D.T.); (Y.Z.); (K.L.); (S.L.)
- Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops in Chongqing, Beibei, Chongqing 400715, China
- State Cultivation Base of Crop Stress Biology for Southern Mountainous Land of Southwest University, Beibei, Chongqing 400715, China
- Correspondence: (K.Z.);
(J.W.); Tel.: +86-6825-1264 (K.Z.); +86-6825-1264 (J.W.)
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Rodamilans B, Valli A, García JA. Molecular Plant-Plum Pox Virus Interactions. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2020; 33:6-17. [PMID: 31454296 DOI: 10.1094/mpmi-07-19-0189-fi] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Plum pox virus, the agent that causes sharka disease, is among the most important plant viral pathogens, affecting Prunus trees across the globe. The fabric of interactions that the virus is able to establish with the plant regulates its life cycle, including RNA uncoating, translation, replication, virion assembly, and movement. In addition, plant-virus interactions are strongly conditioned by host specificities, which determine infection outcomes, including resistance. This review attempts to summarize the latest knowledge regarding Plum pox virus-host interactions, giving a comprehensive overview of their relevance for viral infection and plant survival, including the latest advances in genetic engineering of resistant species.
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Affiliation(s)
- Bernardo Rodamilans
- Departamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB-CSIC), Campus Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Adrián Valli
- Departamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB-CSIC), Campus Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Juan Antonio García
- Departamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB-CSIC), Campus Universidad Autónoma de Madrid, 28049 Madrid, Spain
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