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Zhang C, Liu H, Wang X, Long X, Huang A, Zhang J, Geng J, Yang L, Huang Z, Dong P, Shi L. Inhibitory effects and mechanisms of cinnamaldehyde against Fusarium oxysporum, a serious pathogen in potatoes. PEST MANAGEMENT SCIENCE 2024; 80:3540-3552. [PMID: 38446128 DOI: 10.1002/ps.8058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 02/25/2024] [Accepted: 03/04/2024] [Indexed: 03/07/2024]
Abstract
BACKGROUND Potatoes, a major economic crop, are significantly impacted by Fusarium dry rot, a prevalent postharvest disease. Despite the broad-spectrum antimicrobial properties of cinnamaldehyde, a naturally-derived plant substance, its efficacy against the causal pathogen of potato dry rot (Fusarium oxysporum) and the underlying mechanisms have not been extensively studied. RESULTS Our study demonstrates that cinnamaldehyde effectively inhibits the growth of Fusarium oxysporum, the pathogen responsible for potato dry rot, and increases its sensitivity to environmental stress factors such as extreme temperatures and high salt stress. Treatment with cinnamaldehyde results in altered fungal mycelium morphology, compromised cell wall stability, and disrupted cell membrane integrity, thereby reducing spore viability. Specifically, it interferes with the cell membrane and cell wall structures of the fungus, potentially disrupting fungal growth by modulating signaling pathways involved in cell wall maintenance, chitin metabolism, and GPI-anchored protein function. Notably, we show that cinnamaldehyde induces a form of regulated cell death in F. oxysporum, which is characterized not as typical apoptosis, as evidenced by Annexin V negative staining. However, the specific cell death type and underlying mechanism still needed to be further explored. CONCLUSION Cinnamaldehyde, an environmentally friendly plant-based active compound, exhibits strong inhibitory effects on F. oxysporum, indicating its potential use in the prevention and control strategies for potato dry rot. This research contributes to the understanding of novel antifungal mechanisms and offers promising insights into eco-friendly alternatives for managing this economically significant postharvest disease. © 2024 Society of Chemical Industry.
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Affiliation(s)
- Chunlin Zhang
- School of Life Sciences, Chongqing University, Chongqing, China
| | - Hongling Liu
- School of Life Sciences, Chongqing University, Chongqing, China
| | - Xue Wang
- School of Life Sciences, Chongqing University, Chongqing, China
| | - Xueyan Long
- School of Life Sciences, Chongqing University, Chongqing, China
| | - Airong Huang
- School of Life Sciences, Chongqing University, Chongqing, China
| | - Jiaomei Zhang
- School of Life Sciences, Chongqing University, Chongqing, China
| | - Jiahui Geng
- School of Life Sciences, Chongqing University, Chongqing, China
| | - Liting Yang
- School of Life Sciences, Chongqing University, Chongqing, China
| | - Zhenlin Huang
- Chongqing Agricultural Technology Extension Station, Chongqing, China
| | - Pan Dong
- School of Life Sciences, Chongqing University, Chongqing, China
- Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing, China
| | - Lei Shi
- School of Life Sciences, Chongqing University, Chongqing, China
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Tiwari RK, Lal MK, Kumar R, Mangal V, Kumar A, Kumar R, Sharma S, Sagar V, Singh B. Salt stress influences the proliferation of Fusarium solani and enhances the severity of wilt disease in potato. Heliyon 2024; 10:e26718. [PMID: 38434015 PMCID: PMC10906416 DOI: 10.1016/j.heliyon.2024.e26718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 02/13/2024] [Accepted: 02/19/2024] [Indexed: 03/05/2024] Open
Abstract
Soil salinity has emerged as a critical abiotic stress in potato production, whereas wilt disease, caused by Fusarium solani, is the significant biotic stress. An experiment was performed to decipher the occurrence of wilt incidence by F. solani FJ1 under the influence of salinity in both in vitroand pot culture conditions. High salt concentration negatively influenced root and shoot development in the variety "Kufri Jyoti" but positively affected the mycelial growth and sporulation behaviours of F. solani FJ1. There was abundant whitish mycelial growth with enhanced biomass and high sporulation (microconidia production) in F. solani FJ1 cultured on salt-supplemented media. Moreover, under high salinity conditions (EC 2-8 dS m-1), severe wilting and rotting of vascular bundles were observed in plants artificially inoculated with F. solani FJ1. The mortality rate of potato plants was significantly higher under individual and combined stresses as compared to control. The wilt index of individual and combined stressed plants was also substantially higher compared to the control. Additionally, compared to the control, there was a significant decrease in total chlorophyll content and membrane stability index of the leaves under combined stress. However, the total phenols were increased under stress conditions. The total sugar content of potato plants decreased in infected plants, but increased when exposed to salt stress or a combination of salt stress and pathogen infection. F. solani infection also increased the activity of peroxidase (POX) and decreased the activity of phenylalanine ammonia-lyase (PAL) and catalase (CAT). These results suggest that Fusarium wilt and dry rot will be a more severe disease for potato cultivation in saline soils.
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Affiliation(s)
- Rahul Kumar Tiwari
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla, HP 171001, India
- Division of Crop Protection, ICAR-Indian Institute of Sugarcane Research, Lucknow, Uttar Pradesh 226002, India
| | - Milan Kumar Lal
- Division of CPB&PHT, ICAR-Central Potato Research Institute, Shimla, HP 171001, India
- Division of Crop Physiology and Biochemistry, ICAR-National Rice Research Institute, Cuttack 753006, Odisha, India
| | - Ravinder Kumar
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla, HP 171001, India
- Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India
| | - Vikas Mangal
- Division of Crop Improvement, ICAR-Central Potato Research Institute, Shimla, HP 171001, India
| | - Awadhesh Kumar
- Division of Crop Physiology and Biochemistry, ICAR-National Rice Research Institute, Cuttack 753006, Odisha, India
| | - Rakesh Kumar
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla, HP 171001, India
| | - Sanjeev Sharma
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla, HP 171001, India
| | - Vinay Sagar
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla, HP 171001, India
| | - Brajesh Singh
- Division of CPB&PHT, ICAR-Central Potato Research Institute, Shimla, HP 171001, India
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3
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Akosah YA, Kostennikova ZS, Lutfullin MT, Lutfullina GF, Afordoanyi DM, Vologin SG, Mardanova AM. Induced Expression of CYP51a and HK1 Genes Associated with Penconazole and Fludioxonil Resistance in the Potato Pathogen Fusarium oxysporum. Microorganisms 2023; 11:1257. [PMID: 37317231 DOI: 10.3390/microorganisms11051257] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 05/08/2023] [Accepted: 05/08/2023] [Indexed: 06/16/2023] Open
Abstract
Preventing antifungal resistance development and identifying pathogens with high, medium, and low risk of resistance development to a particular fungicide or fungicide class is crucial in the fight against phytopathogens. We characterized the sensitivity of potato wilt-associated Fusarium oxysporum isolates to fludioxonil and penconazole and assessed the effect of these fungicides on the expression of fungal sterol-14-α-demethylase (CYP51a) and histidine kinase (HK1) genes. Penconazole stunted the growth of F. oxysporum strains at all concentrations used. While all isolates were susceptible to this fungicide, concentrations of up to 1.0 μg/mL were insufficient to cause a 50% inhibition. At low concentrations (0.63 and 1.25 μg/mL), fludioxonil stimulated growth in F. oxysporum. With an increase in the concentration of fludioxonil, only one strain (F. oxysporum S95) exhibited moderate sensitivity to the fungicide. Interaction of F. oxysporum with penconazole and fludioxonil leads to respective elevated expressions of the CYP51a and HK1 genes, which upsurge with increasing concentration of the fungicides. The data obtained indicate that fludioxonil may no longer be suitable for potato protection and its continuous use could only lead to an increased resistance with time.
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Affiliation(s)
- Yaw A Akosah
- Department of Molecular Pathology, New York University College of Dentistry, New York, NY 10010, USA
| | - Zarina S Kostennikova
- Laboratory of Microbial Biotechnology, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia
| | - Marat T Lutfullin
- Laboratory of Microbial Biotechnology, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia
| | - Guzel F Lutfullina
- Laboratory of Microbial Biotechnology, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia
| | - Daniel M Afordoanyi
- Department of Agrobiological Research, Tatar Scientific Research Institute of Agricultural Chemistry and Soil Science, FRC Kazan Scientific Center, Russian Academy of Sciences, Kazan 420059, Russia
- Laboratory of Molecular Genetics and Microbiology Methods, Kazan Scientific Center of Russian Academy of Sciences, Kazan 420059, Russia
| | - Semyon G Vologin
- Department of Agrochemical and Biochemical Analysis, Tatar Research Institute of Agriculture, Kazan Scientific Center of Russian Academy of Sciences, Kazan 420059, Russia
| | - Ayslu M Mardanova
- Laboratory of Microbial Biotechnology, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russia
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Tiwari RK, Lal MK, Kumar R, Sharma S, Sagar V, Kumar A, Singh B, Aggarwal R. Impact of Fusarium Infection on Potato Quality, Starch Digestibility, In Vitro Glycemic Response, and Resistant Starch Content. J Fungi (Basel) 2023; 9:jof9040466. [PMID: 37108920 PMCID: PMC10144655 DOI: 10.3390/jof9040466] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 04/10/2023] [Accepted: 04/11/2023] [Indexed: 04/29/2023] Open
Abstract
Potato dry rot disease caused by multiple Fusarium species is a major global concern in potato production. In this investigation, the tubers of cultivars Kufri Jyoti and Kufri Frysona were artificially inoculated with an individual or combined inoculum of Fusarium sambucinum and Fusarium solani. Fusarium sambucinum caused a significantly higher lesion development (p < 0.01) than Fusarium solani, irrespective of cultivars. The combined inoculum of both the Fusarium species caused significantly higher rot development (p < 0.005) in inoculated tubers. Analyses of starch and amylose content revealed that individual or mixed infection of fungi caused a significant reduction (p < 0.005) in these parameters compared to healthy tubers. The increased starch digestibility due to fungal infection caused a higher glycemic index and glycemic load. The resistant starch also deteriorated in the infected potato tubers as compared to the control. Kufri Jyoti showed a higher starch and amylose content reduction in response to the treatments compared to Kufri Frysona. The correlation analysis demonstrated a negative correlation in lesion diameter and rot volume with starch and amylose content (p < -0.80). However, the glycemic index and resistant starch were positively correlated with lesion development. Altogether, these findings highlight the progressive deterioration of quality parameters, which will be a critical concern for processing industry stakeholders and consumers.
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Affiliation(s)
- Rahul Kumar Tiwari
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla 171001, India
- Division of Plant Pathology, ICAR-Indian Agriculture Research Institute, New Delhi 110012, India
| | - Milan Kumar Lal
- Division of Crop Physiology, Biochemistry and Postharvest Technology, ICAR-Central Potato Research Institute, Shimla 171001, India
| | - Ravinder Kumar
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla 171001, India
| | - Sanjeev Sharma
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla 171001, India
| | - Vinay Sagar
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla 171001, India
| | - Awadhesh Kumar
- Division of Crop Physiology and Biochemistry, ICAR-National Rice Research Institute, Cuttack 753006, India
| | - Brajesh Singh
- Division of Crop Physiology, Biochemistry and Postharvest Technology, ICAR-Central Potato Research Institute, Shimla 171001, India
| | - Rashmi Aggarwal
- Division of Plant Pathology, ICAR-Indian Agriculture Research Institute, New Delhi 110012, India
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5
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Characterization of Tomato Brown Rugose Fruit Virus (ToBRFV) Detected in Czech Republic. DIVERSITY 2023. [DOI: 10.3390/d15020301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Abstract
Tomato is the most consumed vegetable in the world. The tomato brown rugose fruit virus (ToBRFV) is an important destructive virus that damages tomatoes and peppers with significant economic impact. The detection and characterization of this important viral pathogen were evaluated at the molecular and morphological level. The viral isolate was purified and inoculated on tomato and pepper plants. Small RNAs were sequenced in both plants and the profiles were compared. The complete genome of the isolate was obtained, and microRNA (miRNA) profiles were unveiled by small RNA sequencing. Symptoms caused by the isolate were also described and the morphology of the isolate was observed by transmission electron microscopy. Our results contribute to further understanding of the role of miRNAs in ToBRFV pathogenesis, which may be crucial for understanding disease symptom development in tomatoes and peppers.
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6
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Wei C, Li H, Cui G, Ma C, Deng R, Zou Z, Liu Z. Efficient separation of Cinnamomum camphora leaf essential oil and in vitro evaluation of its antifungal activity. ARAB J CHEM 2022. [DOI: 10.1016/j.arabjc.2022.104225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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7
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Stack AJ, Marek SM, Gordon TR, Bostock RM. Genetic Diversity and Potential Inoculum Sources of Fusarium Species Causing Cankers in Bareroot-Propagated Almond Trees in California Nurseries. PLANT DISEASE 2022; 106:1401-1407. [PMID: 34879728 DOI: 10.1094/pdis-08-21-1637-re] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Previous research determined that Fusarium acuminatum and F. avenaceum are important causal agents of a canker disease in bareroot-propagated fruit and nut trees in California that emerges during cold storage or after transplanting. The disease largely disappeared after 2001, but it reemerged in 2011 in almond trees in at least one nursery. This motivated further study of the etiology and epidemiology of the disease by undertaking studies to determine distribution of the pathogens throughout almond nursery propagation systems and trace possible sources of inoculum. Research initiated in 2013 detected pathogenic Fusarium spp. throughout the almond propagation system, including in healthy trees, in soils, on wheat rotation crops, on equipment, and in the cold-storage facility air. In addition to the two Fusarium spp. implicated previously, F. brachygibbosum and a new Fusarium species, F. californicum, were found to be pathogenic on almond trees. Multilocus sequence typing and somatic compatibility testing confirmed that isolates within a species collected from different materials in the nursery were all highly genetically similar and likely of one clonal lineage. These findings affirm that equipment surfaces, wheat rotation crops, soil, cold-storage facility air, and asymptomatic almond tree materials (i.e., rootstock cuttings, budwood, and scions) can potentially contribute inoculum to increase disease prevalence and severity.
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Affiliation(s)
- Abigail J Stack
- Department of Plant Pathology, University of California Davis, Davis, CA 95616
| | - Stephen M Marek
- Department of Entomology and Plant Pathology, Oklahoma State University, Stillwater, OK 74078
| | - Thomas R Gordon
- Department of Plant Pathology, University of California Davis, Davis, CA 95616
| | - Richard M Bostock
- Department of Plant Pathology, University of California Davis, Davis, CA 95616
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8
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Gherbawy YA, Hussein MA, Hassany NA, Shebany YM, Hassan S, El-Dawy EGAE. Phylogeny and pathogenicity of Fusarium solani species complex (FSSC) associated with potato tubers. J Basic Microbiol 2021; 61:1133-1144. [PMID: 34766353 DOI: 10.1002/jobm.202100393] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 10/28/2021] [Accepted: 10/31/2021] [Indexed: 11/10/2022]
Abstract
Potato (Solanum tuberosum L.) is one of the known five crops cultivated throughout the world after corn, barley, cereals, rice, and wheat, due to its content of high carbohydrates. In developing countries, potatoes are especially had valuable contents as a rich source of starch, vitamins C and B6, and essential amino acids. Fusarium solani species complex (FSSC) is one of the prevalent pathogens of potato, causing dry rot in Upper Egypt. In this study, FSSC were isolated and identified from potato tubers based on the morphological and molecular characteristics. F. solani isolates (187) were isolated from infected and noninfected potato tubers collected from various markets in Upper Egypt. Based on the morphology observations, sequence data from amplifying β-tubulin, and specific translation elongation factor (TEF-1α) genes, all of the chosen 88 FSSC isolates were grouped into three major groups (F. keratoplasticum, F. falciforme, and F. solani). All the tested FSSC were able to produce amylases. The selected isolates were examined for their pathogenic ability on healthy potato tubers, which exhibited pathogenic effects; with lesions sizes were quite variable. F. solani SVUFs73 showed a highly virulent effect.
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Affiliation(s)
- Youssuf A Gherbawy
- Department of Botany and Microbiology, Faculty of Science, South Valley University, Qena, Egypt.,Applied and Environmental Microbiology Center, Faculty of Science, South Valley University, Qena, Egypt
| | - Mohamed A Hussein
- Department of Botany and Microbiology, Faculty of Science, South Valley University, Qena, Egypt.,Applied and Environmental Microbiology Center, Faculty of Science, South Valley University, Qena, Egypt
| | - Nabila A Hassany
- Department of Botany and Microbiology, Faculty of Science, South Valley University, Qena, Egypt.,Applied and Environmental Microbiology Center, Faculty of Science, South Valley University, Qena, Egypt
| | - Yassmin M Shebany
- Department of Biology, College of Science, Taif University, Taif, Saudi Arabia
| | - Sabry Hassan
- Department of Biology, College of Science, Taif University, Taif, Saudi Arabia
| | - Eman G A E El-Dawy
- Department of Botany and Microbiology, Faculty of Science, South Valley University, Qena, Egypt.,Applied and Environmental Microbiology Center, Faculty of Science, South Valley University, Qena, Egypt
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9
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Van der Heyden H, Bilodeau GJ, Carisse O, Charron JB. Monitoring of Peronospora destructor Primary and Secondary Inoculum by Real-Time qPCR. PLANT DISEASE 2020; 104:3183-3191. [PMID: 33044917 DOI: 10.1094/pdis-03-20-0687-re] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Onion downy mildew (ODM), caused by Peronospora destructor, is a serious threat for onion growers worldwide. In southwestern Québec, Canada, a steady increase in occurrence of ODM has been observed since the mid-2000s. On onion, P. destructor can develop local and systemic infections producing numerous sporangia which act as initial inoculum locally and also for neighboring areas. It also produces oospores capable of surviving in soils and tissues for a prolonged period of time. A recent study showed that ODM epidemics are strongly associated with weather conditions related to production and survival of overwintering inoculum, stressing the need to understand the role of primary (initial) and secondary inoculum. However, P. destructor is an obligate biotrophic pathogen, which complicates the study of inoculum sources. This study aimed at developing a molecular assay specific to P. destructor, allowing its quantification in environmental samples. In this study, a reliable and sensitive hydrolysis probe-based assay multiplexed with an internal control was developed on the internal transcribed spacer (ITS) region to quantify soil- and airborne inoculum of P. destructor. The assay specificity was tested against 17 isolates of P. destructor obtained from different locations worldwide, other members of the order Peronosporales, and various onion pathogens. Validation with artificially inoculated soil and air samples suggested a sensitivity of less than 10 sporangia g-1 of dry soil and 1 sporangium m-3 of air. Validation with environmental air samples shows a linear relationship between microscopic and real-time quantitative PCR counts. In naturally infested soils, inoculum ranged from 0 to 162 sporangia equivalent g-1 of dry soil, which supported the hypothesis of overwintering under northern climates. This assay will be useful for primary and secondary inoculum monitoring to help characterize ODM epidemiology and could be used for daily tactical and short-term strategic decision-making.
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Affiliation(s)
- Hervé Van der Heyden
- Cie de Recherche Phytodata, 291 rue de la coopérative, Sherrington, QC, Canada
- Department of Plant Science, McGill University, Macdonald Campus, 21,111 Lakeshore Road, Ste-Anne-de-Bellevue, QC, Canada
| | | | - Odile Carisse
- Agriculture and Agri-Food Canada, 430 Boulevard Gouin, St-Jean-sur-Richelieu, QC, Canada
| | - Jean-Benoit Charron
- Department of Plant Science, McGill University, Macdonald Campus, 21,111 Lakeshore Road, Ste-Anne-de-Bellevue, QC, Canada
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Tiwari RK, Kumar R, Sharma S, Sagar V, Aggarwal R, Naga KC, Lal MK, Chourasia KN, Kumar D, Kumar M. Potato dry rot disease: current status, pathogenomics and management. 3 Biotech 2020; 10:503. [PMID: 33163322 DOI: 10.1007/s13205-020-02496-8] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Accepted: 10/19/2020] [Indexed: 12/13/2022] Open
Abstract
Potato dry rot disease caused by Fusarium species is a major threat to global potato production. The soil and seed-borne diseases influence the crop stand by inhibiting the development of potato sprouts and cause severe rots in seed tubers, table and processing purpose potatoes in cold stores. The symptoms of the dry rot include sunken and wrinkled brown to black tissue patches on tubers having less dry matter and shriveled flesh. Fungal infection accompanied by toxin development in the rotten tubers raises more concern for consumer health. The widespread dry rot causing fungal species (Fusarium graminearum) is reported to have a hemibiotrophic lifestyle. A cascade of enzymes, toxins and small secreted proteins are involved in the pathogenesis of these hemibiotrophs. With the availability of the genome sequence of the most devastating species Fusarium sambucinum, it is important to identify the potential pathogenicity factors and small secreted proteins that will help in designing management strategies. Limited resistant cultivars and the emergence of fungicide-resistant strains have made it more threatening for potato cultivation and trade. Several novel fungicide molecules (Azoxystrobin, chlorothalonil and fludioxonil), are found very effective as tuber treatment chemicals. Besides, many beneficial bioagents and safer chemicals have shown antibiosis and mycoparasitism against this pathogen. Germplasm screening for dry rot resistance is important to assist the resistance breeding program for the development of resistant cultivars. This review aims to draw attention to the symptomatology, infection process, pathogenomics, the role of toxins and management approaches for potato dry rot disease, which is very much critical in designing better management strategies.
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Affiliation(s)
- Rahul Kumar Tiwari
- ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh 171 001 India
- ICAR-Indian Agricultural Research Institute, New Delhi, 110012 India
| | - Ravinder Kumar
- ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh 171 001 India
| | - Sanjeev Sharma
- ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh 171 001 India
| | - Vinay Sagar
- ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh 171 001 India
| | - Rashmi Aggarwal
- ICAR-Indian Agricultural Research Institute, New Delhi, 110012 India
| | | | - Milan Kumar Lal
- ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh 171 001 India
- ICAR-Indian Agricultural Research Institute, New Delhi, 110012 India
| | | | - Dharmendra Kumar
- ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh 171 001 India
| | - Manoj Kumar
- ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh 171 001 India
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11
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Liu J, Sun Z, Zou Y, Li W, He F, Huang X, Lin C, Cai Q, Wisniewski M, Wu X. Pre- and postharvest measures used to control decay and mycotoxigenic fungi in potato ( Solanum tuberosum L.) during storage. Crit Rev Food Sci Nutr 2020; 62:415-428. [PMID: 32924541 DOI: 10.1080/10408398.2020.1818688] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Potato (Solanum tuberosum L.), a worldwide, staple food crop, is susceptible to postharvest rots caused by a variety of fungal pathogens, including Fusarium spp., Alternaria spp., Phytophthora infestans, Helminthosporium solani, Rhizoctonia solani, and Colletotrichum coccodes. Rots resulting from infections by these pathogens cause a significant reduction in potato quality and marketable yield. Importantly, some of these decay fungi also produce mycotoxins that represent a potential risk to human health. In the present review, an overview and discussion are provided on the epidemiology and pathogenesis of decay fungi, especially Fusarium spp., that include recent data derived from genomic and phylogenetic analyses. The biosynthesis and functional role of fungitoxic metabolites such as trichothecene mycotoxins and fusaric acid, produced in rotted potatoes are also reviewed. Advances in pre- and postharvest measures for rot management, especially eco-friendly methods including physical control, biological control, the use of natural compounds, and other agricultural management practices are also reviewed. Lastly, novel approaches to control potato dry rot such as the use of mycoviruses and CRISPR technology are highlighted.
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Affiliation(s)
- Jia Liu
- Chongqing Key Laboratory of Economic Plant Biotechnology, College of Landscape Architecture and Life Science/Institute of Special Plants, Chongqing University of Arts and Sciences, Yongchuan, Chongqing, China
| | - Zhiqiang Sun
- Yantai Lvyun Biotechnology Co., Ltd, Yantai, Shandong, China
| | - Yuping Zou
- Yantai Lvyun Biotechnology Co., Ltd, Yantai, Shandong, China
| | - Wenhua Li
- Yantai Lvyun Biotechnology Co., Ltd, Yantai, Shandong, China
| | - Fangyun He
- Chongqing Key Laboratory of Economic Plant Biotechnology, College of Landscape Architecture and Life Science/Institute of Special Plants, Chongqing University of Arts and Sciences, Yongchuan, Chongqing, China
| | - Xiaoya Huang
- Yantai Lvyun Biotechnology Co., Ltd, Yantai, Shandong, China
| | - Chenglin Lin
- Yantai Lvyun Biotechnology Co., Ltd, Yantai, Shandong, China
| | - Qingnian Cai
- College of Plant Protection, China Agricultural University, Beijing, China
| | - Michael Wisniewski
- Department of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA
| | - Xuehong Wu
- College of Plant Protection, China Agricultural University, Beijing, China
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The Effect of Endophytic Bacteria Bacillus subtilis and Salicylic Acid on Some Resistance and Quality Traits of Stored Solanum tuberosum L. Tubers Infected with Fusarium Dry Rot. PLANTS 2020; 9:plants9060738. [PMID: 32545338 PMCID: PMC7356507 DOI: 10.3390/plants9060738] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 06/07/2020] [Accepted: 06/09/2020] [Indexed: 02/06/2023]
Abstract
The effect of endophytic Bacillus subtilis (strains 10-4, 26D) and their compositions withsalicylic acid (SA) on some resistance and quality traits of stored potatoes infected with Fusariumdry rot were studied. The experiments were carried out on hydroponically grown Solanumtuberosum L. tubers that were infected before storage with Fusarium oxysporum and coated with B.subtilis 10-4, 26D with and without exogenous SA, and then stored for six months. It has been shownthat 10-4, 26D, 10-4 + SA, and 26D + SA reduced in different levels (up to 30-50%) the incidence ofF. oxysporum-caused dry rot (with the highest effect for 10-4 + SA). SA notably enhanced the positiveeffect of 10-4, while for 26D, such an effect was not observed. All of the tested treatments increasedamylase (AMY) and AMY inhibitors activity in infected tubers, while decreased Fusarium-inducedprotease activity (except in the case of 10-4 + SA, which promoted a slight increase) was revealed.10-4, 26D, and their compositions with SA decreased (in different degrees) the pathogen-causedlipid peroxidation, proline, and reducing sugars accumulation in potatoes after long-term storage.It was also discovered 10-4 and 26D, regardless of SA presence, decrease pathogen-inducedglycoalkaloids α-Solanine and α-Chaconine accumulation and preserved increased levels of starchand total dry matter in infected stored potatoes. The findings indicate endophytic B. subtilis and itscompositions with SA is a promising eco-friendly and bio-safe approach to cope with postharvestdecays of potato during long-term storage; however, when developing preparations-compositionsit should take into account the strain-dependent manner of B. subtilis action together with SA.
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Kambouris ME, Manoussopoulos Y, Kritikou S, Milioni A, Mantzoukas S, Velegraki A. Toward Decentralized Agrigenomic Surveillance? A Polymerase Chain Reaction–Restriction Fragment Length Polymorphism Approach for Adaptable and Rapid Detection of User-Defined Fungal Pathogens in Potato Crops. ACTA ACUST UNITED AC 2018; 22:264-273. [DOI: 10.1089/omi.2018.0012] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
| | | | - Stavroula Kritikou
- Mycology Research Laboratory, Department of Microbiology, Medical School, National & Kapodistrian University of Athens, Athens, Greece
| | - Aphroditi Milioni
- Mycology Research Laboratory, Department of Microbiology, Medical School, National & Kapodistrian University of Athens, Athens, Greece
| | | | - Aristea Velegraki
- Mycology Research Laboratory, Department of Microbiology, Medical School, National & Kapodistrian University of Athens, Athens, Greece
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Ray M, Ray A, Dash S, Mishra A, Achary KG, Nayak S, Singh S. Fungal disease detection in plants: Traditional assays, novel diagnostic techniques and biosensors. Biosens Bioelectron 2016; 87:708-723. [PMID: 27649327 DOI: 10.1016/j.bios.2016.09.032] [Citation(s) in RCA: 75] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2016] [Revised: 08/25/2016] [Accepted: 09/10/2016] [Indexed: 11/19/2022]
Abstract
Fungal diseases in commercially important plants results in a significant reduction in both quality and yield, often leading to the loss of an entire plant. In order to minimize the losses, it is essential to detect and identify the pathogens at an early stage. Early detection and accurate identification of pathogens can control the spread of infection. The present article provides a comprehensive overview of conventional methods, current trends and advances in fungal pathogen detection with an emphasis on biosensors. Traditional techniques are the "gold standard" in fungal detection which relies on symptoms, culture-based, morphological observation and biochemical identifications. In recent times, with the advancement of biotechnology, molecular and immunological approaches have revolutionized fungal disease detection. But the drawback lies in the fact that these methods require specific and expensive equipments. Thus, there is an urgent need for rapid, reliable, sensitive, cost effective and easy to use diagnostic methods for fungal pathogen detection. Biosensors would become a promising and attractive alternative, but they still have to be subjected to some modifications, improvements and proper validation for on-field use.
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Affiliation(s)
- Monalisa Ray
- Centre of Biotechnology, Siksha O Anusandhan University, Kalinga Nagar, Ghatikia, Bhubaneswar, Odisha, India
| | - Asit Ray
- Centre of Biotechnology, Siksha O Anusandhan University, Kalinga Nagar, Ghatikia, Bhubaneswar, Odisha, India
| | - Swagatika Dash
- Centre of Biotechnology, Siksha O Anusandhan University, Kalinga Nagar, Ghatikia, Bhubaneswar, Odisha, India
| | - Abtar Mishra
- Centre of Biotechnology, Siksha O Anusandhan University, Kalinga Nagar, Ghatikia, Bhubaneswar, Odisha, India
| | | | - Sanghamitra Nayak
- Centre of Biotechnology, Siksha O Anusandhan University, Kalinga Nagar, Ghatikia, Bhubaneswar, Odisha, India
| | - Shikha Singh
- Centre of Biotechnology, Siksha O Anusandhan University, Kalinga Nagar, Ghatikia, Bhubaneswar, Odisha, India.
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Hay FS, Ophel-Keller K, Hartley DM, Pethybridge SJ. Prediction of Potato Tuber Damage by Root-Knot Nematodes using Quantitative DNA Assay of Soil. PLANT DISEASE 2016; 100:592-600. [PMID: 30688598 DOI: 10.1094/pdis-05-15-0537-re] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Root-knot nematodes (Meloidogyne fallax and M. hapla) cause significant reductions in potato yield by reducing tuber quality. Concentrations of M. fallax and M. hapla DNA in soil were determined by quantitative polymerase chain reaction following sampling at planting and harvest within 78 fields across 3 years in Australia. Meloidogyne spp. were also detected using a tomato bioassay. M. fallax was more prevalent than M. hapla and DNA concentrations of M. fallax in soil were significantly higher in samples collected at harvest compared with those at planting. In contrast, M. hapla DNA in soil did not significantly change from planting to harvest. Using receiver operating characteristic curve analysis, M. fallax DNA in soil at planting and harvest was a highly accurate predictor of tuber damage at harvest and galling on tomato. Prediction accuracy for tuber damage was highest for M. fallax DNA compared with M. hapla or M. fallax + M. hapla. Both Meloidogyne spp. were detected in the peel of asymptomatic certified seed. For M. fallax, the addition of seedborne inoculum did not improve tuber damage predictions. This suggested that soilborne M. fallax populations contributed most substantially to tuber damage. These findings highlight the utility of this approach for predicting risk of crop damage from nematodes. The use of this technique as a practical management tool is discussed.
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Affiliation(s)
- Frank S Hay
- School of Integrative Plant Science, Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Geneva, NY 14456
| | - Kathy Ophel-Keller
- South Australian Research Development Institute, Urrbrae, SA 5064, Australia
| | - Diana M Hartley
- CSIRO National Research Collections Australia, Canberra, ACT 2601, Australia
| | - Sarah J Pethybridge
- School of Integrative Plant Science, Section of Plant Pathology and Plant-Microbe Biology, Cornell University, Geneva, NY 14456
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Weikl F, Radl V, Munch JC, Pritsch K. Targeting allergenic fungi in agricultural environments aids the identification of major sources and potential risks for human health. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 529:223-30. [PMID: 26022406 DOI: 10.1016/j.scitotenv.2015.05.056] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2015] [Revised: 04/30/2015] [Accepted: 05/15/2015] [Indexed: 05/20/2023]
Abstract
Fungi are, after pollen, the second most important producers of outdoor airborne allergens. To identify sources of airborne fungal allergens, a workflow for qPCR quantification from environmental samples was developed, thoroughly tested, and finally applied. We concentrated on determining the levels of allergenic fungi belonging to Alternaria, Cladosporium, Fusarium, and Trichoderma in plant and soil samples from agricultural fields in which cereals were grown. Our aims were to identify the major sources of allergenic fungi and factors potentially influencing their occurrence. Plant materials were the main source of the tested fungi at and after harvest. Amounts of A. alternata and C. cladosporioides varied significantly in fields under different management conditions, but absolute levels were very high in all cases. This finding suggests that high numbers of allergenic fungi may be an inevitable side effect of farming in several crops. Applied in large-scale studies, the concept described here may help to explain the high number of sensitization to airborne fungal allergens.
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Affiliation(s)
- F Weikl
- Helmholtz Zentrum München - German Research Center for Environmental Health, Institute of Biochemical Plant Pathology, Neuherberg, Germany.
| | - V Radl
- Helmholtz Zentrum München - German Research Center for Environmental Health, Research Unit Environmental Genomics, Neuherberg, Germany.
| | - J C Munch
- Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
| | - K Pritsch
- Helmholtz Zentrum München - German Research Center for Environmental Health, Institute of Biochemical Plant Pathology, Neuherberg, Germany.
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Deora A, Gossen BD, Amirsadeghi S, McDonald MR. A Multiplex qPCR Assay for Detection and Quantification of Plasmodiophora brassicae in Soil. PLANT DISEASE 2015; 99:1002-1009. [PMID: 30690966 DOI: 10.1094/pdis-06-14-0608-re] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Various physical and chemical factors in soil can inhibit the detection and quantification of soilborne plant pathogens using quantitative polymerase chain reaction (qPCR) assays. A multiplexed TaqMan qPCR assay, including a competitive internal positive control (CIPC), was developed to identify and (where necessary) compensate for inhibition in the quantification of resting spores of Plasmodiophora brassicae from soil. The CIPC amplicon was developed by modifying a sequence coding for green fluorescent protein so that it could be amplified with P. brassicae-specific primers. Addition of CIPC at 5 fg/μl to the singleplex qPCR assay designed to quantify P. brassicae genomic DNA did not reduce the sensitivity, specificity, or reproducibility of the assay. Each of the soil samples, either artificially inoculated or naturally infested with P. brassicae, exhibited no amplification of the CIPC. When the samples were diluted and reassessed, the quantification cycle of the CIPC relative to the control (water only) was delayed in each sample. The magnitude of the delay was used to adjust the estimate of resting spore concentration. The corrected concentration estimates were significantly higher than the unadjusted estimate, which indicated the presence of DNA inhibitors in samples even after dilution. The only exception was a mineral soil sample inoculated with a low concentration (103 spores/g) of resting spores. The assay was optimized for use on a range of soil types. A sample of 0.25 g for mineral soil and 0.10 g for high-organic-matter soil was optimum for recovery of DNA of P. brassicae. The assay represents an improvement over existing assays for estimating resting spore concentration in infested fields.
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Affiliation(s)
- Abhinandan Deora
- Department of Plant Agriculture, University of Guelph, ON N1G 2W1, Canada
| | - Bruce D Gossen
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, SK S7N 0X2, Canada
| | - Sasan Amirsadeghi
- Department of Plant Agriculture, University of Guelph, ON N1G 2W1, Canada
| | - Mary Ruth McDonald
- Department of Plant Agriculture, University of Guelph, ON N1G 2W1, Canada
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Gherbawy YA, Gashgari RM. Mycobiota Associated with Superficial Blemishes of Potato Tubers. FOOD BIOTECHNOL 2013. [DOI: 10.1080/08905436.2013.781947] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Gachango E, Hanson LE, Rojas A, Hao JJ, Kirk WW. Fusarium spp. Causing Dry Rot of Seed Potato Tubers in Michigan and Their Sensitivity to Fungicides. PLANT DISEASE 2012; 96:1767-1774. [PMID: 30727256 DOI: 10.1094/pdis-11-11-0932-re] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
A survey of seed potato tubers in Michigan seed production storage facilities was carried out during 2009 and 2010. Fusarium spp. associated with tuber dry rot symptoms were identified to species and tested for sensitivity to difenoconazole, fludioxonil, and thiabendazole. Symptomatic tubers (n = 370) were collected from a total of 51 seed lots, from which 228 isolates of Fusarium were recovered and identified to 11 species. Fusarium oxysporum was the most commonly isolated species (30.3%), followed by F. equiseti (19.3%). F. sambucinum and F. avenaceum were third most prevalent (each at 13.6%). Less prevalent species (each at 4 to 10%) included F. cerealis, F. solani, and F. acuminatum; and species present at ≤3% included F. sporotrichioides, F. torulosum, F. tricinctum, and F. graminearum. Representative isolates of all species were pathogenic when inoculated onto seed tubers ('Dark Red Norland'). Isolates of F. sambucinum were the most virulent. All 228 isolates of Fusarium were sensitive to difenoconazole (effective fungicide concentration that caused 50% inhibition of mycelial growth [EC50] < 5 mg/liter). Insensitivity to fludioxonil (EC50 > 100 mg/liter) was detected only for F. sambucinum and F. oxysporum isolates at 8.9 and 20.4%, respectively. All isolates were sensitive to thiabendazole (EC50 < 5 mg/liter), except for those of F. sambucinum (EC50 > 100 mg/liter). Therefore, knowledge of what Fusarium spp. are present in seed potato storage facilities in Michigan may be important if using fludioxonil or thiabendazole for seed piece treatment but not when using difenoconazole.
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Affiliation(s)
| | - L E Hanson
- Department of Plant Pathology and United States Department of Agriculture-Agricultural Research Service
| | - A Rojas
- Department of Plant Pathology, Michigan State University, East Lansing 48824
| | - J J Hao
- Department of Plant Pathology, Michigan State University, East Lansing 48824
| | - W W Kirk
- Department of Plant Pathology, Michigan State University, East Lansing 48824
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Niessen L, Gräfenhan T, Vogel RF. ATP citrate lyase 1 (acl1) gene-based loop-mediated amplification assay for the detection of the Fusarium tricinctum species complex in pure cultures and in cereal samples. Int J Food Microbiol 2012; 158:171-85. [PMID: 22867849 DOI: 10.1016/j.ijfoodmicro.2012.06.021] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2012] [Revised: 06/20/2012] [Accepted: 06/26/2012] [Indexed: 01/11/2023]
Abstract
The combined data set of the acl1 and tef-1α gene sequences of 61 fungal strains assigned to Fusarium tricinctum, Fusarium avenaceum, Fusarium acuminatum, Fusarium arthrosporioides, Fusarium flocciferum and Fusarium torulosum were used to study the phylogenetic relations between taxa. F. tricinctum, F. acuminatum and F. avenaceum formed distinct clades. Members of the F. tricinctum/F. acuminatum clade fall into three well supported lineages, of which the largest includes the epitype of F. tricinctum. Loop-mediated isothermal amplification (LAMP) was used to amplify a 167 bp portion of the acl1 gene in F. tricinctum (Corda) Saccardo. DNA amplification was detected in-tube by indirect calcein fluorescence under black light after 60 min of incubation at 65.5 °C. The assay had a detection limit of 0.95 pg of purified genomic DNA of F. tricinctum CBS 410.86 per reaction, corresponding to ca. 18 genomic copies of the acl1 gene. Specificity of the assay was tested using purified DNA from 67 species and subspecies of Fusarium as well as 50 species comprising 22 genera of other filamentous fungi and yeasts. The assay detected 21 of the 23 F. tricinctum strains tested. Cross reactivity was observed with eight out of 13 strains in F. acuminatum but with none of 17 F. avenaceum strains tested. Specificity was further confirmed by conventional PCR with primers designed from the same gene. Detection of F. tricinctum from culture scrapings directly added to the reaction master mix, in DNA extracts from wheat, in single barley grains or in washings of bulk grain samples are proposed as possible applications showing the suitability of the method for food analysis. Finally it was demonstrated that the LAMP reaction can be run using simple lab equipment such as a heating block, water bath, hybridization oven or household equipment, e.g. a microwave oven.
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Affiliation(s)
- Ludwig Niessen
- Lehrstuhl für Technische Mikrobiologie, Technische Universität München, Weihenstephaner Steig 16, D-85350 Freising, Germany.
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Luo Y, Gao W, Doster M, Michailides TJ. Quantification of conidial density of Aspergillus flavus and A. parasiticus in soil from almond orchards using real-time PCR. J Appl Microbiol 2009; 106:1649-60. [PMID: 19226388 DOI: 10.1111/j.1365-2672.2008.04132.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
AIMS To design the Aspergillus flavus and Aspergillus parasiticus-specific primers and a real-time PCR assay for quantification of the conidial density in soil. METHODS AND RESULTS Aspergillus flavus and A. parasiticus-specific DNA primers were designed based on internal transcribed spacer sequences to distinguish these two species and from other Aspergillus and other fungal species. A method of pathogen DNA extraction directly from soil samples was developed. Using the designed primers, a real-time PCR assay was developed to quantitatively determine the conidial density of each A. flavus and A. parasiticus in soil, after generating corresponding standard curves. Known conidial densities of each A. flavus or A. parasiticus in soil significantly correlated with those tested with the real-time PCR. CONCLUSIONS This study demonstrated the applicability of the real-time PCR assay in studies of quantifying A. flavus and A. parasiticus in soil as inoculum sources. SIGNIFICANCE AND IMPACT OF THE STUDY The A. flacus and A. parasitic-specific primers can be widely used in aflatoxin research. The real-time PCR assay developed in this study provides a potential approach to quantify the plant pathogen density from not only soil but also other sources in relation to aflatoxin contamination from environment, food and feed commodities.
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Affiliation(s)
- Y Luo
- Department of Plant Pathology, University of California-Davis, Kearney Agricultural Center, Parlier, CA 93648, USA.
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A PCR-based tool for the cultivation-independent monitoring of Pandora neoaphidis. J Invertebr Pathol 2008; 99:49-56. [DOI: 10.1016/j.jip.2008.03.013] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2007] [Revised: 03/19/2008] [Accepted: 03/20/2008] [Indexed: 11/18/2022]
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Cullen DW, Lees AK. Detection of the nec1 virulence gene and its correlation with pathogenicity in Streptomyces species on potato tubers and in soil using conventional and real-time PCR. J Appl Microbiol 2007; 102:1082-94. [PMID: 17381752 DOI: 10.1111/j.1365-2672.2006.03146.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
AIMS To evaluate the virulence gene nec1 as a reliable marker for the detection of pathogenic Streptomyces species on potato tubers and in soil samples using conventional and real-time quantitative PCR assays. METHODS AND RESULTS Two pairs of conventional primers (outer and nested) and one set of primers/probe for use in real-time PCR were designed to detect the necrogenic protein encoding nec1 gene of Streptomyces scabiei strain ATCC 49173(T). The conventional PCR primers were also incorporated into a multiplex PCR assay to simultaneously detect the nec1 gene in conjunction with the potato pathogens Helminthosporium solani and Colletotrichum coccodes. The specificity of each PCR assay was confirmed by testing 32 pathogenic and nonpathogenic reference strains of Streptomyces representing 12 different species and 74 uncharacterized streptomycete strains isolated from diseased tubers. A clear correlation between pathogenicity and the detection of nec1 by PCR was demonstrated. The sensitivity and specificity of both the conventional and real-time PCR assays allowed the detection of nec1 on potato tubers in the absence of visible symptoms of common scab, and in seeded soil down to a level equivalent to three S. scabiei spores per gram soil. CONCLUSIONS Reliable and quantitative PCR techniques were developed in this study for the specific detection of the virulence gene nec1 of pathogenic Streptomyces species on potato tubers and in soil samples, and the data demonstrated a clear correlation between pathogenicity in Streptomyces species and the presence of the nec1 gene. SIGNIFICANCE AND IMPACT OF THE STUDY Together with the DNA extraction protocols, these diagnostic methods will allow a rapid and accurate assessment of tuber and soil contamination by pathogenic Streptomyces species.
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Affiliation(s)
- D W Cullen
- Scottish Crop Research Institute, Invergowrie, Dundee, Scotland, UK.
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