Nonchemical management of soilborne pests in fresh market vegetable production systems

Low Temperature Biodisinfection Effectiveness for Phytophthora capsici Control of Protected Sweet Pepper Crops in the Southeast of Spain

Biodisinfection using fresh sheep manure in August is effective in controlling Phytophthora root rot in greenhouses in southeast Spain, but this is not the case after the beginning of September. The effectiveness of biodisinfection of new amendments has been evaluated beginning in October in sweet pepper greenhouses to control Phytophthora capsici. The amendments used were: T1: wheat husk + fresh sheep manure (FSM), 3.5 kg m−2; T2: sunflower pellets 3.5 kg m−2; T3: FSM: 3.5 kg m−2; T4: Control. Temperatures above 40°C were obtained in some amendments; anoxic conditions were found in all amendments, and also a reduction of the viability of P. capsici oospores with respect to the control, as well as a higher yield. The contribution of fresh sheep manure to the amendments did not lead to an improvement in their effectiveness. Autumn biodisinfection under low temperature conditions using fresh organic amendments that enhance soil anaerobic conditions may be a promising strategy for the control of P. capsici in pepper greenhouses in southeastern Spain.

Morphological and Pathogenic Characterization of Sclerotium rolfsii, the Causal Agent of Southern Blight Disease on Common Bean in Uganda

Over the last 5 years, Southern blight caused by Sclerotium rolfsii Sacc. has superseded root rots caused by pathogens such as Fusarium and Pythium spp. as a major constraint of common bean (Phaseolus vulgaris L.) production in Uganda. Although S. rolfsii is prevalent in all bean-growing regions of Uganda, there is a lack of information about its diversity and pathogenicity to guide the development of effective management strategies. In total, 348 S. rolfsii isolates were obtained from bean fields in seven agroecological zones of Uganda, with the following objectives: to characterize their morphology, based on mycelial growth rate, mycelium texture, and number of sclerotia; and to determine the pathogenicity of 75 selected isolates on five common bean varieties in artificially inoculated soils in a screenhouse. We found that mycelial growth rate and the number of sclerotia produced on artificial media varied among agroecological zones but not within a zone. The five bean varieties tested were found to be susceptible to S. rolfsii, including varieties MLB49-89A and RWR719 that are resistant to Fusarium and Pythium root rots, respectively. Preemergence damping-off ranged between 0 and 100%, and disease severity index ranged between 4.4 and 100%. The widespread and high levels of S. rolfsii virulence on varieties of common bean indicate that management intervention is urgently required to help reduce losses incurred by Ugandan smallholder farmers.[Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.

Plant disease management in organic farming systems

Organic farming (OF) has significantly increased in importance in recent decades. Disease management in OF is largely based on the maintenance of biological diversity and soil health by balanced crop rotations, including nitrogen-fixing and cover crops, intercrops, additions of manure and compost and reductions in soil tillage. Most soil-borne diseases are naturally suppressed, while foliar diseases can sometimes be problematic. Only when a severe disease outbreak is expected are pesticides used that are approved for OF. A detailed overview is given of cultural and biological control measures. Attention is also given to regulated pesticides. We conclude that a systems approach to disease management is required, and that interdisciplinary research is needed to solve lingering disease problems, especially for OF in the tropics. Some of the organic regulations are in need of revision in close collaboration with various stakeholders.

Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing

Application of the plant associated bacterium Bacillus amyloliquefaciens FZB42 on lettuce (Lactuca sativa) confirmed its capability to promote plant growth and health by reducing disease severity (DS) caused by the phytopathogenic fungus Rhizoctonia solani. Therefore this strain is commercially applied as an eco-friendly plant protective agent. It is able to produce cyclic lipopeptides (CLP) and polyketides featuring antifungal and antibacterial properties. Production of these secondary metabolites led to the question of a possible impact of strain FZB42 on the composition of microbial rhizosphere communities after its application. Rating of DS and lettuce growth during a field trial confirmed the positive impact of strain FZB42 on the health of the host plant. To verify B. amyloliquefaciens as an environmentally compatible plant protective agent, its effect on the indigenous rhizosphere community was analyzed by metagenome sequencing. Rhizosphere microbial communities of lettuce treated with B. amyloliquefaciens FZB42 and non-treated plants were profiled by high-throughput metagenome sequencing of whole community DNA. Fragment recruitments of metagenome sequence reads on the genome sequence of B. amyloliquefaciens FZB42 proved the presence of the strain in the rhizosphere over 5 weeks of the field trial. Comparison of taxonomic community profiles only revealed marginal changes after application of strain FZB42. The orders Burkholderiales, Actinomycetales and Rhizobiales were most abundant in all samples. Depending on plant age a general shift within the composition of the microbial communities that was independent of the application of strain FZB42 was observed. In addition to the taxonomic profiling, functional analysis of annotated sequences revealed no major differences between samples regarding application of the inoculant strain.

Defining the core Arabidopsis thaliana root microbiome

Land plants associate with a root microbiota distinct from the complex microbial community present in surrounding soil. The microbiota colonizing the rhizosphere (immediately surrounding the root) and the endophytic compartment (within the root) contribute to plant growth, productivity, carbon sequestration and phytoremediation. Colonization of the root occurs despite a sophisticated plant immune system, suggesting finely tuned discrimination of mutualists and commensals from pathogens. Genetic principles governing the derivation of host-specific endophyte communities from soil communities are poorly understood. Here we report the pyrosequencing of the bacterial 16S ribosomal RNA gene of more than 600 Arabidopsis thaliana plants to test the hypotheses that the root rhizosphere and endophytic compartment microbiota of plants grown under controlled conditions in natural soils are sufficiently dependent on the host to remain consistent across different soil types and developmental stages, and sufficiently dependent on host genotype to vary between inbred Arabidopsis accessions. We describe different bacterial communities in two geochemically distinct bulk soils and in rhizosphere and endophytic compartments prepared from roots grown in these soils. The communities in each compartment are strongly influenced by soil type. Endophytic compartments from both soils feature overlapping, low-complexity communities that are markedly enriched in Actinobacteria and specific families from other phyla, notably Proteobacteria. Some bacteria vary quantitatively between plants of different developmental stage and genotype. Our rigorous definition of an endophytic compartment microbiome should facilitate controlled dissection of plant-microbe interactions derived from complex soil communities.

Grafting Tomato to Manage Bacterial Wilt Caused by Ralstonia solanacearum in the Southeastern United States

Bacterial wilt, caused by Ralstonia solanacearum, can result in severe losses to tomato (Solanum lycopersicum) growers in the southeastern United States, and grafting with resistant rootstocks may be an effective strategy for managing this disease. However, R. solanacearum populations maintain considerable diversity, and little information is known regarding the efficacy of commercially available rootstocks to reduce bacterial wilt incidence and subsequent crop loss in the United States. In this study, tomato plants grafted onto 'Dai Honmei' and 'RST-04-105-T' rootstocks had significantly lower area under the disease progress curve (AUDPC) values compared with nongrafted plants (P < 0.05). Across three locations in North Carolina, final bacterial wilt incidence for non- and self-grafted plants was 82 ± 14 to 100%. In contrast, bacterial wilt incidence for the grafted plants was 0 to 65 ± 21%. Final bacterial wilt incidence of plants grafted with Dai Honmei rootstock was 0 and 13 ± 3% at two locations in western North Carolina but 50 ± 3% at a third site in eastern North Carolina. Similarly, grafting onto RST-04-105-T rootstock significantly reduced AUDPC values at two of the three locations (P < 0.05) compared with that of the nongrafted plants, but performed poorly at the third site. Total fruit yields were significantly increased by grafting onto resistant rootstocks at all three sites (P < 0.05). Regression analyses indicated that yield was significantly negatively correlated with bacterial wilt AUDPC values (R² was 0.4048 to 0.8034), and the use of resistant rootstocks enabled economically viable tomato production in soils naturally infested with R. solanacearum.

Use of Poultry Manure Combined with Soil Solarization as a Control Method for Meloidogyne incognita in Carnation

The effectiveness of a combination of soil solarization and poultry manure (raw or pelletized) amendments for the control of root-knot nematode (Meloidogyne incognita) was tested in carnation (Dianthus caryophyllus) crops grown in in-ground beds under plastic-covered greenhouse conditions in southern Spain. Our trials demonstrated that soil solarization alone did not provide sufficient control of root-knot nematode, because the carnation growing season in this region only partly coincides with the most effective period for solarization, resulting in an insufficient duration of treatment during a key period for effectiveness. Chemical fumigation with 1,3-dichloropropene + chloropicrin prior to planting was effective in reducing nematode population densities in soil. Its effects spanned 9 months after planting, resulting in acceptable crop yields. In comparison, the combination of soil solarization and raw or pelletized poultry manure was slightly less effective than chemical fumigation for control of this pathogen but crop yields after 9 months were similar. However, the higher root gall indices observed after 9 months, in comparison with chemically fumigated plots, indicated the need for a reapplication of the organic manure treatment at the start of each successive growing season.

Aminopyralid soil residues affect rotational vegetable crops in Florida

BACKGROUND

Bahiagrass (Paspalum notatum Flueggé) is a poor host of several soilborne pests of vegetable crops; therefore vegetable crops are commonly grown in a rotation with bahiagrass pastures in Florida. The herbicide aminopyralid provides foliar and soil residual weed control and increases forage production in bahiagrass pastures; however, the soil residual activity of aminopyralid makes carryover injury likely in subsequent sensitive vegetable crops. Field research was conducted to determine the sensitivity of five vegetable crops to soil residues of aminopyralid.

RESULTS

At an aminopyralid soil concentration of 0.2 µg kg(-1) (the limit of quantitation for aminopyralid in this research), crop injury ratings were 48% (bell pepper), 67% (eggplant), 71% (tomato), 3% (muskmelon) and 3% (watermelon), and fruit yield losses (relative to the untreated control) at that concentration were 61, 64, 95, 8 and 14% in those respective crops.

CONCLUSIONS

The crops included in this research were negatively affected by aminopyralid at soil concentrations less than the limit of quantitation (0.2 µg kg(-1) ). Therefore, it was concluded that a field bioassay must be used to determine whether carryover injury will occur when these crops are planted on a site where aminopyralid has been previously applied.

Selection of genetically diverse Trichoderma spp. isolates for suppression of Phytophthora capsici on bell pepper

Environmentally compatible control measures are needed for suppression of Phytophthora capsici on pepper. Twenty-three isolates of Trichoderma were screened for suppression of a mixture of 4 genetically distinct isolates of this pathogen on bell pepper (Capsicum anuum) in greenhouse pot assays. Of these 23 isolates, GL12, GL13, and Th23 provided significant suppression of P. capsici in at least 2 assays. These isolates were then compared with Trichoderma virens isolates GL3 and GL21 for suppression of this disease in the presence and absence of the harpin-based natural product Messenger. Isolates GL3 and Th23 provided significant disease suppression (P ≤ 0.05) in 3 of 4 assays, while GL12, GL13, and GL21 provided significant suppression in 2 of 4 assays. There was no apparent benefit from the application of Messenger. Phylogenetic analysis of these 5 isolates (based on the ITS1 region of the nuclear rDNA cluster and tef1), and an additional 9 isolates that suppressed P. capsici in at least 1 assay, separated isolates into 2 clades, with 1 clade containing GL3, GL12, GL13, and GL21. There were also 2 more distantly related isolates, one of which was Th23. We report here the identification of genetically distinct Trichoderma isolates for potential use in disease management strategies employing isolate combinations directed at suppression of P. capsici on pepper.

Evaluation of the effect of ecologic on root knot nematode, Meloidogyne incognita, and tomato plant, Lycopersicon esculenum

Nonchemical methods and strategies for nematode management including cultural methods and engineered measures have been recommended as an alternative to methyl bromide (a major soil fumigant), due to its role in the depletion of the ozone layer. Hence, an international agreement has recently been reached calling for its reduced consumption and complete phasing out. This present research evaluates the potential of Ecologic, a biological, marine shell meal chitin material, as a soil amendment management agent for root knot nematode, Meloidogyne incognita, control, and its effect on the growth of Floradel tomato plant, Lycopersicon esculentum. To accomplish this goal, studies were conducted during which, experimental pots were set up in greenhouse environments using sterilized soil inoculated with 5,000 root-knot eggs per 1500 g soil. There were 4 treatments and 5 replications. Treatments were: No chitin; 50 g chitin; 100 g chitin; and 200 g chitin. A two-week wait period following Ecologic amendment preceded Floradel tomato planting to allow breakdown of the chitin material into the soil. Fresh and dry weights of shoot and root materials were taken as growth end-points. A statistically significant difference (p ≤ 0.05) was obtained with regard to the growth rate of L. esculentum at 100 g chitin treatment compared to the control with no chitin. Mean fresh weights of Floradel tomato were 78.0 ± 22.3g, 81.0 ± 20.3g, 109.0 ± 25.4g and 102.0 ± 33.3g at 0, 50, 100 and 200g chitin, respectively. The analysis of root knot nematode concentrations indicated a substantial effect on reproduction rate associated with chitin amendment. Study results showed a significant decrease in both root knot nematode eggs and juveniles (J2) at 100g and 200g Ecologic chitin levels, however, an increase in nematode concentrations was recorded at the 50g Ecologic chitin level (p ≤ 0.05). The mean amounts of J2 population, as expressed per 1500cm³ soil, were 49,933 ± 38,819, 86,050 ± 25248, 103 ± 133 and 103 ± 133 for 0, 50, 100 and 200g chitin, respectively. Similarly, the mean numbers of root knot nematode eggs (per 1500cm³ of soil) were 40,759 ± 36,712, 66,048 ± 39,730, 9,904 ± 16,591 and 9,257 ± 17,204. Root gall rating was also significantly lower (p ≤ 0.05) at the 100g and 200g chitin levels compared to the control. Percent gall ratings were 3.3 ± 1.0%, 3.2 ± 1.0%, 1.0 ± 0.5%, and 1.0% ± 0.6% for amendment levels of 0, 50, 100, and 200g chitin, respectively.

Sequential Sampling for Estimation and Classification of the Incidence of Hop Powdery Mildew I: Leaf Sampling

Hop powdery mildew (caused by Podosphaera macularis) is an important disease of hops (Humulus lupulus) in the Pacific Northwest. Sequential sampling models for estimation and classification of the incidence of powdery mildew on leaves of hop were developed based on the beta-binomial distribution, using parameter estimates of the binary power law determined in previous studies. Stop lines, models that indicate that enough information has been collected to estimate disease incidence and cease sampling, for sequential estimation were validated by bootstrap simulations of a select group of 18 data sets (out of a total of 198 data sets) from the model-construction data, and through simulated sampling of 104 data sets collected independently (i.e., validation data sets). The achieved coefficient of variation (C) approached prespecified C values as the achieved disease incidence ( ) increased. Achieving a C of 0.1 was not possible for data sets in which < 0.10. The 95% confidence interval of the median difference between the true p and included zero for 16 of 18 data sets evaluated at C = 0.2 and all data sets when C = 0.1. For sequential classification, Monte-Carlo simulations were used to determine the probability of classifying mean disease incidence as less than a threshold incidence, p_t (operating characteristic [OC]), and average sample number (ASN) curves for 16 combinations of candidate stop lines and error levels (α and β). Four pairs of stop lines were selected for further evaluation based on the results of the Monte-Carlo simulations. Bootstrap simulations of the 18 selected data sets indicated that the OC and ASN curves of the sequential sampling plans for each of the four sets of stop lines were similar to OC and ASN values determined by Monte Carlo simulation. Correct classification of disease incidence as being above or below preselected thresholds was 2.0 to 7.7% higher when stop lines were determined by the beta-binomial approximation than when stop lines were calculated using the binomial distribution. Correct decision rates differed depending on the location where sampling was initiated in the hop yard; however, in all instances were greater than 86% when stop lines were determined using the beta-binomial approximation. The sequential sampling plans evaluated in this study should allow for rapid and accurate estimation and classification of the incidence of hop leaves with powdery mildew, and aid in sampling for pest management decision making.

Movement and biological activity of drip-applied 1,3-dichloropropene and chloropicrin in raised mulched beds in the southeastern USA

Movement and biological activity of 1,3-dichloropropene (1,3-D) and chloropicrin applied through drip irrigation in raised beds was investigated at three locations in the southeastern USA. Tests were conducted in fields with dense populations of nutsedge (Cyperus spp), with one location also having a high level of soil nematodes, both of which served as biological indicators of the distribution of effective concentrations of 1,3-D and chloropicrin. Objectives were (1) to gain a better understanding of 1,3-D and chloropicrin movement and the extent of biological activity outside of the wetted bed area, and (2) to examine the effect of application rate, application concentration and subsequent irrigation events on movement and activity of 1,3-D and chloropicrin. InLine, an emulsifiable concentrate containing 60.8% w/w 1,3-D and 33.3% w/w chloropicrin, was injected into polyethylene mulched beds through the drip tubes and water movement in the beds was visualized by adding a blue dye to the injection system. Gas concentrations of 1,3-D and chloropicrin in soil were measured using Gastec detection tubes at different positions relative to the drip tube at 1-4 days after InLine application. After one week, mulch was removed and nutsedge survival evaluated at different positions in the bed. High concentrations of 1,3-D and chloropicrin were measured at the bed center and midway between the bed center and the shoulder, but concentrations were low at the bed shoulder. Width of nutsedge control was significantly greater than width of water movement. Plant-parasitic nematodes were controlled over the entire bed width, but nutsedge re-emerged at the bed shoulders regardless of treatment. Higher application rates and concentrations of 1,3-D + chloropicrin resulted in higher fumigant concentrations in soil air. Irrigations subsequent to application reduced soil air concentrations of 1,3-D and chloropicrin and increased water movement, as did the use of two drip tubes instead of one. The data show that the pesticidal activity of 1,3-D + chloropicrin extends beyond the waterfront and indicate a significant degree of fumigant activity of emulsifiable 1,3-D + chloropicrin. However, unlike plant-parasitic nematodes, nutsedge could not be controlled over the entire bed width, regardless of rate, concentration and volume of water applied.

Chemical Alternatives to Methyl Bromide in Spanish Strawberry Nurseries

Strawberry runners are a high-value cash crop in Spain that requires vigorous transplants free of pathogens. Preplant soil fumigation with methyl bromide, or with mixtures of methyl bromide and chloropicrin, is a standard practice for controlling soilborne diseases. Soil fumigants chloropicrin, 1,3-dichloropropene, dazomet, metam-sodium, metam potassium, and dimethyl disulfide were evaluated in combination with different plastic films as alternatives for methyl bromide soil fumigation of strawberry nurseries. The studies were conducted over a 4-year period, with fumigant applications prior to planting. Verticillium wilt (caused by Verticillium spp.) and crown rot (caused by Phytophthora cactorum) were the main diseases. Chloropicrin, 1,3-dichloropropene, and dazomet compared well with methyl bromide fumigation for control of strawberry nursery diseases. Furthermore, 1,3-dichloropropene and methyl bromide, applied at 50% rate under virtually impermeable film, provided effective disease control in strawberry nurseries. Fumigant effects on fungal soil populations are discussed.