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Tuttu U, Ulaş E, Gülçin D, Velázquez J, Çiçek K, Özcan AU. Assessment of Ecological Bridges at Wildlife Crossings in Türkiye: A Case Study of Wild Boar Crossings on the Izmir-Çeşme Motorway. Animals (Basel) 2023; 14:30. [PMID: 38200762 PMCID: PMC10778415 DOI: 10.3390/ani14010030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 12/13/2023] [Accepted: 12/15/2023] [Indexed: 01/12/2024] Open
Abstract
In this study, the use of an ecological bridge installed as a wildlife overpass and constructed in the Zeytinler neighborhood in 2020 was analyzed as a mitigating factor in wild-boar-vehicle collisions (WVCs) on the Izmir-Çeşme motorway. In this context, this study aimed to assess the use of the Zeytinler Ecological Bridge by wild boars (Sus scrofa Linnaeus, 1758). To this end, wildlife crossings were monitored, analyzed, and modeled with Bayesian networks. Between August 2020 and December 2022, a total of 686 instances of movement were observed among six medium to large wild mammal species. Wild boars accounted for approximately 87.5% of the recorded wildlife crossings, with foxes comprising 10%. The findings showed that the highest frequency of wildlife crossings occurred during the autumn season, particularly between 22:00 (10 p.m.) and 02:00 (2 a.m.), coinciding with the Waxing Gibbous and Waxing Crescent phases of the moon. The model outcomes highlighted that during the autumn season with a full pond, wild boar crossings increased by one and a half times in comparison to regular herd crossings. Throughout the observation period, there were no instances of wild boar fatalities subsequent to the completion of the bridge.
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Affiliation(s)
- Uğur Tuttu
- Department of Wildlife, Institute of Natural and Applied Sciences, Çankırı Karatekin University, Çankırı 18200, Türkiye; (U.T.); (A.U.Ö.)
| | - Efehan Ulaş
- Department of Statistics, Science Faculty, Çankırı Karatekin University, Çankırı 18200, Türkiye
| | - Derya Gülçin
- Faculty of Agriculture, Department of Landscape Architecture, Aydın Adnan Menderes University, Aydın 09100, Türkiye
- TEMSUS Research Group, Catholic University of Ávila, 05005 Ávila, Spain; (J.V.); (K.Ç.)
| | - Javier Velázquez
- TEMSUS Research Group, Catholic University of Ávila, 05005 Ávila, Spain; (J.V.); (K.Ç.)
- Faculty of Sciences and Arts, Department of Environment and Agroforestry, Catholic University of Ávila, 05005 Ávila, Spain
- Tecnatura Research Group, Technical University of Madrid, 28040 Madrid, Spain
| | - Kerim Çiçek
- TEMSUS Research Group, Catholic University of Ávila, 05005 Ávila, Spain; (J.V.); (K.Ç.)
- Faculty of Science, Department of Biology, Section of Zoology, Ege University, Izmir 35100, Türkiye
- Natural History Application and Research Centre, Ege University, Izmir 35100, Türkiye
| | - Ali Uğur Özcan
- Department of Wildlife, Institute of Natural and Applied Sciences, Çankırı Karatekin University, Çankırı 18200, Türkiye; (U.T.); (A.U.Ö.)
- TEMSUS Research Group, Catholic University of Ávila, 05005 Ávila, Spain; (J.V.); (K.Ç.)
- Faculty of Forestry, Department of Landscape Architecture, Çankırı Karatekin University, Çankırı 18200, Türkiye
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Zhang H, Zhang X, Yao X, Wang Q. Exploring factors related to heart attack complicated with hypertension using a Bayesian network model: a study based on the China Health and Retirement Longitudinal Study. Front Public Health 2023; 11:1259718. [PMID: 37780426 PMCID: PMC10534983 DOI: 10.3389/fpubh.2023.1259718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Accepted: 08/28/2023] [Indexed: 10/03/2023] Open
Abstract
Objectives While Bayesian networks (BNs) represents a good approach to discussing factors related to many diseases, little attention has been poured into heart attack combined with hypertension (HAH) using BNs. This study aimed to explore the complex network relationships between HAH and its related factors, and to achieve the Bayesian reasoning for HAH, thereby, offering a scientific reference for the prevention and treatment of HAH. Methods The data was downloaded from the Online Open Database of CHARLS 2018, a population-based longitudinal survey. In this study, we included 16 variables from data on demographic background, health status and functioning, and lifestyle. First, Elastic Net was first used to make a feature selection for highly-related variables for HAH, which were then included into BN model construction. The structural learning of BNs was achieved using Tabu algorithm and the parameter learning was conducted using maximum likelihood estimation. Results Among 19,752 individuals (9,313 men and 10,439 women) aged 64.73 ± 10.32 years, Among 19,752 individuals (9,313 men and 10,439 women), there are 8,370 ones without HAH (42.4%) and 11,382 ones with HAH (57.6%). What's more, after feature selection using Elastic Net, Physical activity, Residence, Internet access, Asset, Marital status, Sleep duration, Social activity, Educational levels, Alcohol consumption, Nap, BADL, IADL, Self report on health, and age were included into BN model establishment. BNs were constructed with 15 nodes and 25 directed edges. The results showed that age, sleep duration, physical activity and self-report on health are directly associated with HAH. Besides, educational levels and IADL could indirectly connect to HAH through physical activity; IADL and BADL could indirectly connect to HAH through Self report on health. Conclusion BNs could graphically reveal the complex network relationship between HAH and its related factors. Besides, BNs allows for risk reasoning for HAH through Bayesian reasoning, which is more consistent with clinical practice and thus holds some application prospects.
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Affiliation(s)
- Haifen Zhang
- Department of General Practice, Shanxi Provincial People’s Hospital, The Fifth Clinical Medical College of Shanxi Medical University, Taiyuan, China
| | - Xiaotong Zhang
- Department of Respiratory and Critical Care Medicine, Shanxi Provincial People’s Hospital, The Fifth Clinical Medical College of Shanxi Medical University, Taiyuan, China
| | - Xiaodong Yao
- Department of General Practice, Shanxi Provincial People’s Hospital, The Fifth Clinical Medical College of Shanxi Medical University, Taiyuan, China
| | - Qiang Wang
- Department of Infectious Disease, Shanxi Provincial People’s Hospital, The Fifth Clinical Medical College of Shanxi Medical University, Taiyuan, China
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Yuan X, Song W, Li Y, Wang Q, Qing J, Zhi W, Han H, Qin Z, Gong H, Hou G, Li Y. Using Bayesian networks with tabu algorithm to explore factors related to chronic kidney disease with mental illness: A cross-sectional study. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:16194-16211. [PMID: 37920009 DOI: 10.3934/mbe.2023723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/04/2023]
Abstract
While Bayesian networks (BNs) offer a promising approach to discussing factors related to many diseases, little attention has been poured into chronic kidney disease with mental illness (KDMI) using BNs. This study aimed to explore the complex network relationships between KDMI and its related factors and to apply Bayesian reasoning for KDMI, providing a scientific reference for its prevention and treatment. Data was downloaded from the online open database of CHARLS 2018, a population-based longitudinal survey. Missing values were first imputed using Random Forest, followed by propensity score matching (PSM) for class balancing regarding KDMI. Elastic Net was then employed for variable selection from 18 variables. Afterwards, the remaining variables were included in BNs model construction. Structural learning of BNs was achieved using tabu algorithm and the parameter learning was conducted using maximum likelihood estimation. After PSM, 427 non-KDMI cases and 427 KDMI cases were included in this study. Elastic Net identified 11 variables significantly associated with KDMI. The BNs model comprised 12 nodes and 24 directed edges. The results suggested that diabetes, physical activity, education levels, sleep duration, social activity, self-report on health and asset were directly related factors for KDMI, whereas sex, age, residence and Internet access represented indirect factors for KDMI. BN model not only allows for the exploration of complex network relationships between related factors and KDMI, but also could enable KDMI risk prediction through Bayesian reasoning. This study suggests that BNs model holds great prospects in risk factor detection for KDMI.
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Affiliation(s)
- Xiaoli Yuan
- Department of Nephrology, Shanxi Provincial People's Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan 030012, China
| | - Wenzhu Song
- School of Public Health, Shanxi Medical University, No.56 Xinjian South Road, Taiyuan 030001, China
| | - Yaheng Li
- Shanxi Provincial Key Laboratory of Kidney Disease, Taiyuan 030012, China
| | - Qili Wang
- School of Public Health, Shanxi Medical University, No.56 Xinjian South Road, Taiyuan 030001, China
| | - Jianbo Qing
- Department of Nephrology, Shanxi Provincial People's Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan 030012, China
| | - Wenqiang Zhi
- Department of Nephrology, Shanxi Provincial People's Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan 030012, China
| | - Huimin Han
- Department of Nephrology, Shanxi Provincial People's Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan 030012, China
| | - Zhiqi Qin
- Department of Biochemistry & Molecular Biology, Shanxi Medical University, Taiyuan, Shanxi, China
| | - Hao Gong
- Department of Biochemistry & Molecular Biology, Shanxi Medical University, Taiyuan, Shanxi, China
| | - Guohua Hou
- Department of Nephrology, Hejin People's hospital, Yuncheng 043300, China
| | - Yafeng Li
- Department of Nephrology, Shanxi Provincial People's Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan 030012, China
- Department of Nephrology, Hejin People's hospital, Yuncheng 043300, China
- Core Laboratory, Shanxi Provincial People's Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan 030012, China
- Academy of Microbial Ecology, Shanxi Medical University, Taiyuan 030012, China
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Using Bayesian networks with Tabu-search algorithm to explore risk factors for hyperhomocysteinemia. Sci Rep 2023; 13:1610. [PMID: 36709366 PMCID: PMC9884210 DOI: 10.1038/s41598-023-28123-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Accepted: 01/13/2023] [Indexed: 01/30/2023] Open
Abstract
Hyperhomocysteinemia (HHcy) is a condition closely associated with cardiovascular and cerebrovascular diseases. Detecting its risk factors and taking some relevant interventions still represent the top priority to lower its prevalence. Yet, in discussing risk factors, Logistic regression model is usually adopted but accompanied by some defects. In this study, a Tabu Search-based BNs was first constructed for HHcy and its risk factors, and the conditional probability between nodes was calculated using Maximum Likelihood Estimation. Besides, we tried to compare its performance with Hill Climbing-based BNs and Logistic regression model in risk factor detection and discuss its prospect in clinical practice. Our study found that Age, sex, α1-microgloblobumin to creatinine ratio, fasting plasma glucose, diet and systolic blood pressure represent direct risk factors for HHcy, and smoking, glycosylated hemoglobin and BMI constitute indirect risk factors for HHcy. Besides, the performance of Tabu Search-based BNs is better than Hill Climbing-based BNs. Accordingly, BNs with Tabu Search algorithm could be a supplement for Logistic regression, allowing for exploring the complex network relationship and the overall linkage between HHcy and its risk factors. Besides, Bayesian reasoning allows for risk prediction of HHcy, which is more reasonable in clinical practice and thus should be promoted.
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Song W, Qiu L, Qing J, Zhi W, Zha Z, Hu X, Qin Z, Gong H, Li Y. Using Bayesian network model with MMHC algorithm to detect risk factors for stroke. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2022; 19:13660-13674. [PMID: 36654062 DOI: 10.3934/mbe.2022637] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Stroke is a major chronic non-communicable disease with high incidence, high mortality, and high recurrence. To comprehensively digest its risk factors and take some relevant measures to lower its prevalence is of great significance. This study aimed to employ Bayesian Network (BN) model with Max-Min Hill-Climbing (MMHC) algorithm to explore the risk factors for stroke. From April 2019 to November 2019, Shanxi Provincial People's Hospital conducted opportunistic screening for stroke in ten rural areas in Shanxi Province. First, we employed propensity score matching (PSM) for class balancing for stroke. Afterwards, we used Chi-square testing and Logistic regression model to conduct a preliminary analysis of risk factors for stroke. Statistically significant variables were incorporated into BN model construction. BN structure learning was achieved using MMHC algorithm, and its parameter learning was achieved with Maximum Likelihood Estimation. After PSM, 748 non-stroke cases and 748 stroke cases were included in this study. BN was built with 10 nodes and 12 directed edges. The results suggested that age, fasting plasma glucose, systolic blood pressure, and family history of stroke constitute direct risk factors for stroke, whereas sex, educational levels, high density lipoprotein cholesterol, diastolic blood pressure, and urinary albumin-to-creatinine ratio represent indirect risk factors for stroke. BN model with MMHC algorithm not only allows for a complicated network relationship between risk factors and stroke, but also could achieve stroke risk prediction through Bayesian reasoning, outshining traditional Logistic regression model. This study suggests that BN model boasts great prospects in risk factor detection for stroke.
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Affiliation(s)
- Wenzhu Song
- School of Public Health, Shanxi Medical University, Taiyuan, China
| | - Lixia Qiu
- School of Public Health, Shanxi Medical University, Taiyuan, China
| | - Jianbo Qing
- Department of Nephrology, Shanxi Provincial People's Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan, China
| | - Wenqiang Zhi
- Department of Nephrology, Shanxi Provincial People's Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan, China
| | - Zhijian Zha
- Chinese Internal Medicine, Shanxi University of Chinese Medicine, Taiyuan, China
| | - Xueli Hu
- School of Public Health, Shanxi Medical University, Taiyuan, China
| | - Zhiqi Qin
- Department of Biochemistry & Molecular Biology, Shanxi Medical University, Taiyuan, China
| | - Hao Gong
- Department of Biochemistry & Molecular Biology, Shanxi Medical University, Taiyuan, China
| | - Yafeng Li
- Department of Nephrology, Shanxi Provincial People's Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan, China
- Core Laboratory, Shanxi Provincial People's Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan, China
- Shanxi Provincial Key Laboratory of Kidney Disease, Taiyuan, China
- Academy of Microbial Ecology, Shanxi Medical University, Taiyuan, China
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Song W, Gong H, Wang Q, Zhang L, Qiu L, Hu X, Han H, Li Y, Li R, Li Y. Using Bayesian networks with Max-Min Hill-Climbing algorithm to detect factors related to multimorbidity. Front Cardiovasc Med 2022; 9:984883. [PMID: 36110415 PMCID: PMC9468216 DOI: 10.3389/fcvm.2022.984883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 08/11/2022] [Indexed: 11/23/2022] Open
Abstract
Objectives Multimorbidity (MMD) is a medical condition that is linked with high prevalence and closely related to many adverse health outcomes and expensive medical costs. The present study aimed to construct Bayesian networks (BNs) with Max-Min Hill-Climbing algorithm (MMHC) algorithm to explore the network relationship between MMD and its related factors. We also aimed to compare the performance of BNs with traditional multivariate logistic regression model. Methods The data was downloaded from the Online Open Database of CHARLS 2018, a population-based longitudinal survey. In this study, we included 10 variables from data on demographic background, health status and functioning, and lifestyle. Missing value imputation was first performed using Random Forest. Afterward, the variables were included into logistic regression model construction and BNs model construction. The structural learning of BNs was achieved using MMHC algorithm and the parameter learning was conducted using maximum likelihood estimation. Results Among 19,752 individuals (9,313 men and 10,439 women) aged 64.73 ± 10.32 years, there are 9,129 ones without MMD (46.2%) and 10,623 ones with MMD (53.8%). Logistic regression model suggests that physical activity, sex, age, sleep duration, nap, smoking, and alcohol consumption are associated with MMD (P < 0.05). BNs, by establishing a complicated network relationship, reveals that age, sleep duration, and physical activity have a direct connection with MMD. It also shows that education levels are indirectly connected to MMD through sleep duration and residence is indirectly linked to MMD through sleep duration. Conclusion BNs could graphically reveal the complex network relationship between MMD and its related factors, outperforming traditional logistic regression model. Besides, BNs allows for risk reasoning for MMD through Bayesian reasoning, which is more consistent with clinical practice and thus holds some application prospects.
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Affiliation(s)
- Wenzhu Song
- School of Public Health, Shanxi Medical University, Taiyuan, China
| | - Hao Gong
- Department of Biochemistry and Molecular Biology, Basic Medical College, Shanxi Medical University, Taiyuan, China
| | - Qili Wang
- School of Public Health, Shanxi Medical University, Taiyuan, China
| | - Lijuan Zhang
- The Second Clinical Medical College, Shanxi Medical University, Taiyuan, China
| | - Lixia Qiu
- School of Public Health, Shanxi Medical University, Taiyuan, China
| | - Xueli Hu
- School of Public Health, Shanxi Medical University, Taiyuan, China
| | - Huimin Han
- Department of Nephrology, Shanxi Provincial People’s Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan, China
| | - Yaheng Li
- Shanxi Provincial Key Laboratory of Kidney Disease, Taiyuan, China
| | - Rongshan Li
- Department of Nephrology, Shanxi Provincial People’s Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan, China
- Shanxi Provincial Key Laboratory of Kidney Disease, Taiyuan, China
| | - Yafeng Li
- Department of Nephrology, Shanxi Provincial People’s Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan, China
- Shanxi Provincial Key Laboratory of Kidney Disease, Taiyuan, China
- Core Laboratory, Shanxi Provincial People’s Hospital (Fifth Hospital) of Shanxi Medical University, Taiyuan, China
- Shanxi Medical University, Academy of Microbial Ecology, Taiyuan, China
- *Correspondence: Yafeng Li,
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Wang X, Pan J, Ren Z, Zhai M, Zhang Z, Ren H, Song W, He Y, Li C, Yang X, Li M, Quan D, Chen L, Qiu L. Application of a novel hybrid algorithm of Bayesian network in the study of hyperlipidemia related factors: a cross-sectional study. BMC Public Health 2021; 21:1375. [PMID: 34247609 PMCID: PMC8273956 DOI: 10.1186/s12889-021-11412-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 06/29/2021] [Indexed: 12/27/2022] Open
Abstract
Background This article aims to understand the prevalence of hyperlipidemia and its related factors in Shanxi Province. On the basis of multivariate Logistic regression analysis to find out the influencing factors closely related to hyperlipidemia, the complex network connection between various variables was presented through Bayesian networks(BNs). Methods Logistic regression was used to screen for hyperlipidemia-related variables, and then the complex network connection between various variables was presented through BNs. Since some drawbacks stand out in the Max-Min Hill-Climbing (MMHC) hybrid algorithm, extra hybrid algorithms are proposed to construct the BN structure: MMPC-Tabu, Fast.iamb-Tabu and Inter.iamb-Tabu. To assess their performance, we made a comparison between these three hybrid algorithms with the widely used MMHC hybrid algorithm on randomly generated datasets. Afterwards, the optimized BN was determined to explore to study related factors for hyperlipidemia. We also make a comparison between the BN model with logistic regression model. Results The BN constructed by Inter.iamb-Tabu hybrid algorithm had the best fitting degree to the benchmark networks, and was used to construct the BN model of hyperlipidemia. Multivariate logistic regression analysis suggested that gender, smoking, central obesity, daily average salt intake, daily average oil intake, diabetes mellitus, hypertension and physical activity were associated with hyperlipidemia. BNs model of hyperlipidemia further showed that gender, BMI, and physical activity were directly related to the occurrence of hyperlipidemia, hyperlipidemia was directly related to the occurrence of diabetes mellitus and hypertension; the average daily salt intake, daily average oil consumption, smoking, and central obesity were indirectly related to hyperlipidemia. Conclusions The BN of hyperlipidemia constructed by the Inter.iamb-Tabu hybrid algorithm is more reasonable, and allows for the overall linking effect between factors and diseases, revealing the direct and indirect factors associated with hyperlipidemia and correlation between related variables, which can provide a new approach to the study of chronic diseases and their associated factors. Supplementary Information The online version contains supplementary material available at 10.1186/s12889-021-11412-5.
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Affiliation(s)
- Xuchun Wang
- Department of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, 030001, Shanxi, China
| | - Jinhua Pan
- Key Laboratory of Public Health Safety of Ministry of Education, School of Public Health, Fudan University, Shanghai, 200032, China
| | - Zeping Ren
- Shanxi Centre for Disease Control and Prevention, Taiyuan, 030012, Shanxi, China
| | - Mengmeng Zhai
- Department of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, 030001, Shanxi, China
| | - Zhuang Zhang
- Department of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, 030001, Shanxi, China
| | - Hao Ren
- Department of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, 030001, Shanxi, China
| | - Weimei Song
- Department of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, 030001, Shanxi, China
| | - Yuling He
- Shanxi Centre for Disease Control and Prevention, Taiyuan, 030012, Shanxi, China
| | - Chenglian Li
- Shanxi Centre for Disease Control and Prevention, Taiyuan, 030012, Shanxi, China
| | - Xiaojuan Yang
- Shanxi Centre for Disease Control and Prevention, Taiyuan, 030012, Shanxi, China
| | - Meichen Li
- Department of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, 030001, Shanxi, China
| | - Dichen Quan
- Department of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, 030001, Shanxi, China
| | - Limin Chen
- Shanxi Provincial People's Hospital, Taiyuan city, Shanxi Province, China.
| | - Lixia Qiu
- Department of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, 030001, Shanxi, China.
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