Human mobility networks and persistence of rapidly mutating pathogens

Online bilateral matching methodology for anti-epidemic resources based on spatial transmission risk

This paper focuses on the online anti-epidemic resource allocation between demanders and suppliers considering the epidemic spatial spread. The spatial crowdsourcing with sharing platform is an effective way for anti-epidemic resource allocation, and a reasonable online matching strategy can improve the efficiency of resource utilization. The paper proposes online matching heuristic strategy (HSTRF-LRLUF strategy) and designs an online batch bilateral matching algorithm for anti-epidemic resources, which considers the impact of grid spatial aggregation and diffusion risk of emerging infectious diseases. The population distribution within grids and the commuting patterns between grids can provide decision support for selecting online matching strategies of anti-epidemic resources. A larger matching time window focusing on the spatial transmission risk (TR) of the epidemic can obtain better matching results. However, with a smaller matching time window, the decision makers can focus on spatial agglomeration risk (OR) or spatial diffusion risk (IR). The paper effectively combines the spatial crowdsourcing model with the anti-epidemic resource allocation to achieve the allocation of emergency resources to individuals. A combined anti-epidemic resource online matching heuristic strategies is designed from the spatial agglomeration risk and the spatial diffusion risk. Decision makers can dynamically adjust the online matching strategies of anti-epidemic resources by evaluating the spatial agglomeration risk, the spatial diffusion risk, and the overall spatial transmission risk based on the real-time spread of the epidemic and the supply of anti-epidemic resources.

Causality Network of Infectious Disease Revealed With Causal Decomposition

Causal inference in the field of infectious disease attempts to gain insight into the potential causal nature of an association between risk factors and diseases. Simulated causality inference experiments have shown preliminary promise in improving understanding of the transmission of infectious diseases but still lack sufficient quantitative causal inference studies based on real-world data. Here, we investigate the causal interactions between three different infectious diseases and related factors, using causal decomposition analysis, to characterize the nature of infectious disease transmission. We show that the complex interactions between infectious disease and human behavior have a quantifiable impact on transmission efficiency of infectious diseases. Our findings, by shedding light on the underlying transmission mechanism of infectious diseases, suggest that causal inference analysis is a promising approach to determine epidemiological interventions.

Generic approach for mathematical model of multi-strain pandemics

Multi-strain pandemics have emerged as a major concern. We introduce a new model for assessing the connection between multi-strain pandemics and mortality rate, basic reproduction number, and maximum infected individuals. The proposed model provides a general mathematical approach for representing multi-strain pandemics, generalizing for an arbitrary number of strains. We show that the proposed model fits well with epidemiological historical world health data over a long time period. From a theoretical point of view, we show that the increasing number of strains increases logarithmically the maximum number of infected individuals and the mean mortality rate. Moreover, the mean basic reproduction number is statistically identical to the single, most aggressive pandemic strain for multi-strain pandemics.

Mixing protocols in the public goods game

If interaction partners in social dilemma games are not selected randomly from the population but are instead determined by a network of contacts, it has far reaching consequences for the evolutionary dynamics. Selecting partners randomly leads to a well-mixed population, where pattern formation is essentially impossible. This rules out important mechanisms that can facilitate cooperation, most notably network reciprocity. In contrast, if interactions are determined by a lattice or a network, then the population is said to be structured, where cooperators can form compact clusters that protect them from invading defectors. Between these two extremes, however, there is ample middle ground that can be brought about by the consideration of temporal networks, mobility, or other coevolutionary processes. The question that we here seek to answer is, when does mixing on a lattice actually lead to well-mixed conditions? To that effect, we use the public goods game on a square lattice, and we consider nearest-neighbor and random mixing with different frequencies, as well as a mix of both mixing protocols. Not surprisingly, we find that nearest-neighbor mixing requires a higher frequency than random mixing to arrive at the well-mixed limit. The differences between the two mixing protocols are most expressed at intermediate mixing frequencies, whilst at very low and very high mixing frequencies the two almost converge. We also find a near universal exponential growth of the average size of cooperator clusters as their fraction increases from zero to one, regardless of whether this increase is due to increasing the multiplication factor of the public goods, decreasing the frequency of mixing, or gradually shifting the mixing from random to nearest neighbors.

A data-driven assessment of early travel restrictions related to the spreading of the novel COVID-19 within mainland China

Two months after it was firstly reported, the novel coronavirus disease COVID-19 spread worldwide. However, the vast majority of reported infections until February occurred in China. To assess the effect of early travel restrictions adopted by the health authorities in China, we have implemented an epidemic metapopulation model that is fed with mobility data corresponding to 2019 and 2020. This allows to compare two radically different scenarios, one with no travel restrictions and another in which mobility is reduced by a travel ban. Our findings indicate that i) travel restrictions might be an effective measure in the short term, however, ii) they are ineffective when it comes to completely eliminate the disease. The latter is due to the impossibility of removing the risk of seeding the disease to other regions. Furthermore, our study highlights the importance of developing more realistic models of behavioral changes when a disease outbreak is unfolding.

Evaluation of the potential incidence of COVID-19 and effectiveness of containment measures in Spain: a data-driven approach

BACKGROUND

We are currently experiencing an unprecedented challenge, managing and containing an outbreak of a new coronavirus disease known as COVID-19. While China-where the outbreak started-seems to have been able to contain the growth of the epidemic, different outbreaks are nowadays present in multiple countries. Nonetheless, authorities have taken action and implemented containment measures, even if not everything is known.

METHODS

To facilitate this task, we have studied the effect of different containment strategies that can be put into effect. Our work referred initially to the situation in Spain as of February 28, 2020, where a few dozens of cases had been detected, but has been updated to match the current situation as of 13 April. We implemented an SEIR metapopulation model that allows tracing explicitly the spatial spread of the disease through data-driven stochastic simulations.

RESULTS

Our results are in line with the most recent recommendations from the World Health Organization, namely, that the best strategy is the early detection and isolation of individuals with symptoms, followed by interventions and public recommendations aimed at reducing the transmissibility of the disease, which, although might not be sufficient for disease eradication, would produce as a second order effect a delay of several days in the raise of the number of infected cases.

CONCLUSIONS

Many quantitative aspects of the natural history of the disease are still unknown, such as the amount of possible asymptomatic spreading or the role of age in both the susceptibility and mortality of the disease. However, preparedness plans and mitigation interventions should be ready for quick and efficacious deployment globally. The scenarios evaluated here through data-driven simulations indicate that measures aimed at reducing individuals' flow are much less effective than others intended for early case identification and isolation. Therefore, resources should be directed towards detecting as many and as fast as possible the new cases and isolate them.

Mechanisms for lyssavirus persistence in non-synanthropic bats in Europe: insights from a modeling study

Bats are natural reservoirs of the largest proportion of viral zoonoses among mammals, thus understanding the conditions for pathogen persistence in bats is essential to reduce human risk. Focusing on the European Bat Lyssavirus subtype 1 (EBLV-1), causing rabies disease, we develop a data-driven spatially explicit metapopulation model to investigate EBLV-1 persistence in Myotis myotis and Miniopterus schreibersii bat species in Catalonia. We find that persistence relies on host spatial structure through the migratory nature of M. schreibersii, on cross-species mixing with M. myotis, and on survival of infected animals followed by temporary immunity. The virus would not persist in the single colony of M. myotis. Our study provides for the first time epidemiological estimates for EBLV-1 progression in M. schreibersii. Our approach can be readily adapted to other zoonoses of public health concern where long-range migration and habitat sharing may play an important role.

Multinational patterns of seasonal asymmetry in human movement influence infectious disease dynamics

Seasonal variation in human mobility is globally ubiquitous and affects the spatial spread of infectious diseases, but the ability to measure seasonality in human movement has been limited by data availability. Here, we use mobile phone data to quantify seasonal travel and directional asymmetries in Kenya, Namibia, and Pakistan, across a spectrum from rural nomadic populations to highly urbanized communities. We then model how the geographic spread of several acute pathogens with varying life histories could depend on country-wide connectivity fluctuations through the year. In all three countries, major national holidays are associated with shifts in the scope of travel. Within this broader pattern, the relative importance of particular routes also fluctuates over the course of the year, with increased travel from rural to urban communities after national holidays, for example. These changes in travel impact how fast communities are likely to be reached by an introduced pathogen.