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Tack NB, Du Clos KT, Gemmell BJ. Fish can use coordinated fin motions to recapture their own vortex wake energy. ROYAL SOCIETY OPEN SCIENCE 2024; 11:231265. [PMID: 38179082 PMCID: PMC10762429 DOI: 10.1098/rsos.231265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Accepted: 12/01/2023] [Indexed: 01/06/2024]
Abstract
During swimming, many fishes use pectoral fins for propulsion and, in the process, move substantial amounts of water rearward. However, the effect that this upstream wake has on the caudal fin remains largely unexplored. By coordinating motions of the caudal fin with the pectoral fins, fishes have the potential to create constructive flow interactions which may act to partially recapture the upstream energy lost in the pectoral fin wake. Using experimentally derived velocity and pressure fields for the silver mojarra (Eucinostomus argenteus), we show that pectoral-caudal fin (PCF) coordination enables the circulation and interception of pectoral fin wake vortices by the caudal fin. This acts to transfer energy to the caudal fin and enhance its hydrodynamic efficiency at swimming speeds where this behaviour occurs. We also find that mojarras commonly use PCF coordination in nature. The results offer new insights into the evolutionary drivers and behavioural plasticity of fish swimming as well as for developing more capable bioinspired underwater vehicles.
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Affiliation(s)
- Nils B. Tack
- Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL 33620, USA
| | - Kevin T. Du Clos
- Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL 33620, USA
| | - Brad J. Gemmell
- Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL 33620, USA
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2
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Moroz LL. Brief History of Ctenophora. Methods Mol Biol 2024; 2757:1-26. [PMID: 38668961 DOI: 10.1007/978-1-0716-3642-8_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/04/2024]
Abstract
Ctenophores are the descendants of the earliest surviving lineage of ancestral metazoans, predating the branch leading to sponges (Ctenophore-first phylogeny). Emerging genomic, ultrastructural, cellular, and systemic data indicate that virtually every aspect of ctenophore biology as well as ctenophore development are remarkably different from what is described in representatives of other 32 animal phyla. The outcome of this reconstruction is that most system-level components associated with the ctenophore organization result from convergent evolution. In other words, the ctenophore lineage independently evolved as high animal complexities with the astonishing diversity of cell types and structures as bilaterians and cnidarians. Specifically, neurons, synapses, muscles, mesoderm, through gut, sensory, and integrative systems evolved independently in Ctenophora. Rapid parallel evolution of complex traits is associated with a broad spectrum of unique ctenophore-specific molecular innovations, including alternative toolkits for making an animal. However, the systematic studies of ctenophores are in their infancy, and deciphering their remarkable morphological and functional diversity is one of the hot topics in biological research, with many anticipated surprises.
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Affiliation(s)
- Leonid L Moroz
- Department of Neuroscience, McKnight Brain Institute, University of Florida, Gainesville, FL, USA.
- Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine, FL, USA.
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3
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Silakov MI, Kuznetsov AV, Temnykh AV, Anninsky BE. Effect of monochromatic light on the behavior of the ctenophore Mnemiopsis leidyi (A. Agassiz, 1865). Biosystems 2023; 231:104987. [PMID: 37516316 DOI: 10.1016/j.biosystems.2023.104987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 07/25/2023] [Accepted: 07/26/2023] [Indexed: 07/31/2023]
Abstract
Ctenophores are invertebrate, gelatinous predators that perform complex movements due to their numerous ciliary comb plates. We investigated the behavioral responses of the ctenophore Mnemiopsis leidyi A. Agassiz, 1865 to red, green, and blue lights of different powers and fluxes emitted by LEDs or lasers. White LEDs were used to mimic natural sunlight. When laser light was directed to the aboral organ, the animals tended to leave the illumination zone. The blue-light reaction was six times faster than the red-light reaction. The behavioral strategy of the animals changed significantly when their freedom of maneuvering was restricted. Typical locomotions were ranked according to the laser beam avoidance time from the beginning of exposure to going into darkness. The minimum reaction time was required for turning and moving the ctenophore, while moving along the laser beam and turning around required more time. Typical patterns of behavior of M. leidyi in the light flux were established using cluster analysis. Three preferential behavioral strategies were identified for avoiding laser irradiation: 1) body rotation; 2) shifting sideways; and 3) movement with deviation from the beam. The elementary ability of ctenophores to make decisions in situative conditions has been demonstrated.
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Affiliation(s)
- M I Silakov
- A.O. Kovalevsky Institute of Biology of the Southern Seas, RAS, Leninsky Avenue 38, Moscow, 119991, Russia
| | - A V Kuznetsov
- A.O. Kovalevsky Institute of Biology of the Southern Seas, RAS, Leninsky Avenue 38, Moscow, 119991, Russia.
| | - A V Temnykh
- A.O. Kovalevsky Institute of Biology of the Southern Seas, RAS, Leninsky Avenue 38, Moscow, 119991, Russia
| | - B E Anninsky
- A.O. Kovalevsky Institute of Biology of the Southern Seas, RAS, Leninsky Avenue 38, Moscow, 119991, Russia
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4
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Potter B, Corrales-Ugalde M, Townsend JP, Colin SP, Sutherland KR, Costello JH, Collins R, Gemmell BJ. Quantifying the feeding behavior and trophic impact of a widespread oceanic ctenophore. Sci Rep 2023; 13:2292. [PMID: 36759558 PMCID: PMC9911642 DOI: 10.1038/s41598-023-27955-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 01/10/2023] [Indexed: 02/11/2023] Open
Abstract
Oceanic ctenophores are widespread predators on pelagic zooplankton. While data on coastal ctenophores often show strong top-down predatory impacts in their ecosystems, differing morphologies, prey capture mechanisms and behaviors of oceanic species preclude the use of coastal data to draw conclusion on oceanic species. We used high-resolution imaging methods both in situ and in the laboratory to quantify interactions of Ocyropsis spp. with natural copepod prey. We confirmed that Ocyropsis spp. uses muscular lobe contraction and a prehensile mouth to capture prey, which is unique amongst ctenophores. This feeding mechanism results in high overall capture success whether encountering single or multiple prey between the lobes (71 and 81% respectively). However, multiple prey require several attempts for successful capture whereas single prey are often captured on the first attempt. Digestion of adult copepods takes 44 min at 25 °C and does not vary with ctenophore size. At high natural densities, we estimate that Ocyropsis spp. consume up to 40% of the daily copepod standing stock. This suggests that, when numerous, Ocyropsis spp. can exert strong top-down control on oceanic copepod populations. At more common densities, these animals consume only a small proportion of the daily copepod standing stock. However, compared to data from pelagic fishes and oceanic medusae, Ocyropsis spp. appears to be the dominant copepod predator in this habitat.
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Affiliation(s)
- Betsy Potter
- Integrative Biology, University of South Florida, Tampa, FL, USA
| | - Marco Corrales-Ugalde
- Atmospheric and Oceanic Sciences, Princeton University, Princeton, NJ, USA.,Oregon Institute of Marine Biology, University of Oregon, Eugene, OR, USA
| | | | - Sean P Colin
- Marine Biology, Roger Williams University, Bristol, RI, USA
| | - Kelly R Sutherland
- Oregon Institute of Marine Biology, University of Oregon, Eugene, OR, USA
| | | | | | - Brad J Gemmell
- Integrative Biology, University of South Florida, Tampa, FL, USA.
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5
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Ren Z, Zhang M, Song S, Liu Z, Hong C, Wang T, Dong X, Hu W, Sitti M. Soft-robotic ciliated epidermis for reconfigurable coordinated fluid manipulation. SCIENCE ADVANCES 2022; 8:eabq2345. [PMID: 36026449 PMCID: PMC9417179 DOI: 10.1126/sciadv.abq2345] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Accepted: 07/13/2022] [Indexed: 06/08/2023]
Abstract
The fluid manipulation capabilities of current artificial cilia are severely handicapped by the inability to reconfigure near-surface flow on various static or dynamically deforming three-dimensional (3D) substrates. To overcome this challenge, we propose an electrically driven soft-robotic ciliated epidermis with multiple independently controlled polypyrrole bending actuators. The beating kinematics and the coordination of multiple actuators can be dynamically reconfigured to control the strength and direction of fluid transportation. We achieve fluid transportation along and perpendicular to the beating directions of the actuator arrays, and toward or away from the substrate. The ciliated epidermises are bendable and stretchable and can be deployed on various static or dynamically deforming 3D surfaces. They enable previously difficult to obtain fluid manipulation functionalities, such as transporting fluid in tubular structures or enhancing fluid transportation near dynamically bending and expanding surfaces.
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Affiliation(s)
- Ziyu Ren
- Physical Intelligence Department, Max Planck Institute for Intelligent Systems, Stuttgart 70569, Germany
- Department of Information Technology and Electrical Engineering, ETH Zurich, Zurich 8092, Switzerland
| | - Mingchao Zhang
- Physical Intelligence Department, Max Planck Institute for Intelligent Systems, Stuttgart 70569, Germany
| | - Shanyuan Song
- Physical Intelligence Department, Max Planck Institute for Intelligent Systems, Stuttgart 70569, Germany
| | - Zemin Liu
- Physical Intelligence Department, Max Planck Institute for Intelligent Systems, Stuttgart 70569, Germany
| | - Chong Hong
- Physical Intelligence Department, Max Planck Institute for Intelligent Systems, Stuttgart 70569, Germany
| | - Tianlu Wang
- Physical Intelligence Department, Max Planck Institute for Intelligent Systems, Stuttgart 70569, Germany
| | - Xiaoguang Dong
- Physical Intelligence Department, Max Planck Institute for Intelligent Systems, Stuttgart 70569, Germany
| | - Wenqi Hu
- Physical Intelligence Department, Max Planck Institute for Intelligent Systems, Stuttgart 70569, Germany
| | - Metin Sitti
- Physical Intelligence Department, Max Planck Institute for Intelligent Systems, Stuttgart 70569, Germany
- Department of Information Technology and Electrical Engineering, ETH Zurich, Zurich 8092, Switzerland
- School of Medicine and College of Engineering, Koç University, Istanbul 34450, Turkey
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Multigenerational laboratory culture of pelagic ctenophores and CRISPR-Cas9 genome editing in the lobate Mnemiopsis leidyi. Nat Protoc 2022; 17:1868-1900. [PMID: 35697825 DOI: 10.1038/s41596-022-00702-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Accepted: 03/23/2022] [Indexed: 11/08/2022]
Abstract
Despite long-standing experimental interest in ctenophores due to their unique biology, ecological influence and evolutionary status, previous work has largely been constrained by the periodic seasonal availability of wild-caught animals and difficulty in reliably closing the life cycle. To address this problem, we have developed straightforward protocols that can be easily implemented to establish long-term multigenerational cultures for biological experimentation in the laboratory. In this protocol, we describe the continuous culture of the Atlantic lobate ctenophore Mnemiopsis leidyi. A rapid 3-week egg-to-egg generation time makes Mnemiopsis suitable for a wide range of experimental genetic, cellular, embryological, physiological, developmental, ecological and evolutionary studies. We provide recommendations for general husbandry to close the life cycle of Mnemiopsis in the laboratory, including feeding requirements, light-induced spawning, collection of embryos and rearing of juveniles to adults. These protocols have been successfully applied to maintain long-term multigenerational cultures of several species of pelagic ctenophores, and can be utilized by laboratories lacking easy access to the ocean. We also provide protocols for targeted genome editing via microinjection with CRISPR-Cas9 that can be completed within ~2 weeks, including single-guide RNA synthesis, early embryo microinjection, phenotype assessment and sequence validation of genome edits. These protocols provide a foundation for using Mnemiopsis as a model organism for functional genomic analyses in ctenophores.
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Sahadevan V, Panigrahi B, Chen CY. Microfluidic Applications of Artificial Cilia: Recent Progress, Demonstration, and Future Perspectives. MICROMACHINES 2022; 13:735. [PMID: 35630202 PMCID: PMC9147031 DOI: 10.3390/mi13050735] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 04/19/2022] [Accepted: 04/19/2022] [Indexed: 02/06/2023]
Abstract
Artificial cilia-based microfluidics is a promising alternative in lab-on-a-chip applications which provides an efficient way to manipulate fluid flow in a microfluidic environment with high precision. Additionally, it can induce favorable local flows toward practical biomedical applications. The endowment of artificial cilia with their anatomy and capabilities such as mixing, pumping, transporting, and sensing lead to advance next-generation applications including precision medicine, digital nanofluidics, and lab-on-chip systems. This review summarizes the importance and significance of the artificial cilia, delineates the recent progress in artificial cilia-based microfluidics toward microfluidic application, and provides future perspectives. The presented knowledge and insights are envisaged to pave the way for innovative advances for the research communities in miniaturization.
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Affiliation(s)
- Vignesh Sahadevan
- Department of Mechanical Engineering, National Cheng Kung University, Tainan 701, Taiwan;
| | - Bivas Panigrahi
- Department of Refrigeration, Air Conditioning and Energy Engineering, National Chin-Yi University of Technology, Taichung 411, Taiwan;
| | - Chia-Yuan Chen
- Department of Mechanical Engineering, National Cheng Kung University, Tainan 701, Taiwan;
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8
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Herrera-Amaya A, Seber EK, Murphy DW, Patry WL, Knowles TS, Bubel MM, Maas AE, Byron ML. Spatiotemporal Asymmetry in Metachronal Rowing at Intermediate Reynolds Numbers. Integr Comp Biol 2021; 61:1579-1593. [PMID: 34410363 DOI: 10.1093/icb/icab179] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 06/15/2021] [Accepted: 08/17/2021] [Indexed: 11/13/2022] Open
Abstract
In drag-based swimming, individual propulsors operating at low Reynolds numbers (where viscous forces dominate over inertial forces) must execute a spatially asymmetric stroke to produce net fluid displacement. Temporal asymmetry (that is, differing duration between the power vs. recovery stroke) does not affect the overall generated thrust in this time-reversible regime. Metachronal rowing, in which multiple appendages beat sequentially, is used by a wide variety of organisms from low to intermediate Reynolds numbers. At the upper end of this range, inertia becomes important, and increasing temporal asymmetry can be an effective way to increase thrust. However, the combined effects of spatial and temporal asymmetry are not fully understood in the context of metachronal rowing. To explore the role of spatiotemporal asymmetry in metachronal rowing, we combine laboratory experiments and reduced-order analytical modeling. We measure beat kinematics and generated flows in two species of lobate ctenophores across a range of body sizes, from 7 mm to 40 mm in length. We observe characteristically different flows in ctenophores of differing body size and Reynolds number, and a general decrease in spatial asymmetry and increase in temporal asymmetry with increasing Reynolds number. We also construct a one-dimensional mathematical model consisting of a row of oscillating flat plates whose flow-normal areas change with time, and use it to explore the propulsive forces generated across a range of Reynolds numbers and kinematic parameters. The model results show that while both types of asymmetry increase force production, they have different effects in different regions of the parameter space. These results may have strong biological implications, as temporal asymmetry can be actively controlled while spatial asymmetry is likely to be partially or entirely driven by passive fluid-structure interaction.
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9
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Byron ML, Murphy DW, Katija K, Hoover AP, Daniels J, Garayev K, Takagi D, Kanso E, Gemmell BJ, Ruszczyk M, Santhanakrishnan A. Metachronal motion across scales: current challenges and future directions. Integr Comp Biol 2021; 61:1674-1688. [PMID: 34048537 DOI: 10.1093/icb/icab105] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Metachronal motion is used across a wide range of organisms for a diverse set of functions. However, despite its ubiquity, analysis of this behavior has been difficult to generalize across systems. Here we provide an overview of known commonalities and differences between systems that use metachrony to generate fluid flow. We also discuss strategies for standardizing terminology and defining future investigative directions that are analogous to other established subfields of biomechanics. Lastly, we outline key challenges that are common to many metachronal systems, opportunities that have arisen due to the advent of new technology (both experimental and computational), and next steps for community development and collaboration across the nascent network of metachronal researchers.
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Affiliation(s)
| | - David W Murphy
- University of South Florida, 4202 E. Fowler Ave, Tampa, FL, 33620, USA
| | - Kakani Katija
- Monterey Bay Aquarium Research Institute, 7700 Sandholdt Rd, Moss Landing, CA, 95039, USA
| | | | - Joost Daniels
- Monterey Bay Aquarium Research Institute, 7700 Sandholdt Rd, Moss Landing, CA, 95039, USA
| | - Kuvvat Garayev
- University of South Florida, 4202 E. Fowler Ave, Tampa, FL, 33620, USA
| | - Daisuke Takagi
- University of Hawaii at Manoa, 2500 Campus Rd, Honolulu, HI, 96822
| | - Eva Kanso
- University of Southern California, University Park, Los Angeles, CA, 90007
| | | | - Melissa Ruszczyk
- Georgia Institute of Technology, 310 Ferst Dr, Atlanta, GA, 30332, USA
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10
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Gemmell BJ, Du Clos KT, Colin SP, Sutherland KR, Costello JH. The most efficient metazoan swimmer creates a 'virtual wall' to enhance performance. Proc Biol Sci 2021; 288:20202494. [PMID: 33402068 DOI: 10.1098/rspb.2020.2494] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
It has been well documented that animals (and machines) swimming or flying near a solid boundary get a boost in performance. This ground effect is often modelled as an interaction between a mirrored pair of vortices represented by a true vortex and an opposite sign 'virtual vortex' on the other side of the wall. However, most animals do not swim near solid surfaces and thus near body vortex-vortex interactions in open-water swimmers have been poorly investigated. In this study, we examine the most energetically efficient metazoan swimmer known to date, the jellyfish Aurelia aurita, to elucidate the role that vortex interactions can play in animals that swim away from solid boundaries. We used high-speed video tracking, laser-based digital particle image velocimetry (dPIV) and an algorithm for extracting pressure fields from flow velocity vectors to quantify swimming performance and the effect of near body vortex-vortex interactions. Here, we show that a vortex ring (stopping vortex), created underneath the animal during the previous swim cycle, is critical for increasing propulsive performance. This well-positioned stopping vortex acts in the same way as a virtual vortex during wall-effect performance enhancement, by helping converge fluid at the underside of the propulsive surface and generating significantly higher pressures which result in greater thrust. These findings advocate that jellyfish can generate a wall-effect boost in open water by creating what amounts to a 'virtual wall' between two real, opposite sign vortex rings. This explains the significant propulsive advantage jellyfish possess over other metazoans and represents important implications for bio-engineered propulsion systems.
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Affiliation(s)
- Brad J Gemmell
- Department of Integrative Biology, University of South Florida, Tampa, FL 33620, USA
| | - Kevin T Du Clos
- Department of Integrative Biology, University of South Florida, Tampa, FL 33620, USA
| | - Sean P Colin
- Whitman Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.,Marine Biology/Environmental Sciences, Roger Williams University, Bristol, RI 02809, USA
| | - Kelly R Sutherland
- Oregon Institute of Marine Biology, University of Oregon, Eugene, OR, USA
| | - John H Costello
- Whitman Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.,Biology Department, Providence College, Providence, RI 02908, USA
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