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Park T, Burin G, Lazo-Cancino D, Rees JPG, Rule JP, Slater GJ, Cooper N. Charting the course of pinniped evolution: insights from molecular phylogeny and fossil record integration. Evolution 2024; 78:1212-1226. [PMID: 38644688 DOI: 10.1093/evolut/qpae061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 04/02/2024] [Accepted: 04/19/2024] [Indexed: 04/23/2024]
Abstract
Pinnipeds (seals, sea lions, walruses, and their fossil relatives) are one of the most successful mammalian clades to live in the oceans. Despite a well-resolved molecular phylogeny and a global fossil record, a complete understanding of their macroevolutionary dynamics remains hampered by a lack of formal analyses that combine these 2 rich sources of information. We used a meta-analytic approach to infer the most densely sampled pinniped phylogeny to date (36 recent and 93 fossil taxa) and used phylogenetic paleobiological methods to study their diversification dynamics and biogeographic history. Pinnipeds mostly diversified at constant rates. Walruses, however, experienced rapid turnover in which extinction rates ultimately exceeded speciation rates from 12 to 6 Ma, possibly due to changing sea levels and/or competition with otariids (eared seals). Historical biogeographic analyses, including fossil data, allowed us to confidently identify the North Pacific and the North Atlantic (plus or minus Paratethys) as the ancestral ranges of Otarioidea (eared seals + walrus) and crown phocids (earless seals), respectively. Yet, despite the novel addition of stem pan-pinniped taxa, the region of origin for Pan-Pinnipedia remained ambiguous. These results suggest further avenues of study in pinnipeds and provide a framework for investigating other groups with substantial extinct and extant diversity.
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Affiliation(s)
- Travis Park
- School of Biological Sciences, Monash University, Melbourne, Australia
- Science Group, Natural History Museum London, London, United Kingdom
- Sciences, Museums Victoria, Melbourne, Australia
| | - Gustavo Burin
- Science Group, Natural History Museum London, London, United Kingdom
| | - Daniela Lazo-Cancino
- Laboratorio de Mastozoología, Departamento de Zoología, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile
| | - Joseph P G Rees
- Science Group, Natural History Museum London, London, United Kingdom
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | - James P Rule
- School of Biological Sciences, Monash University, Melbourne, Australia
- Science Group, Natural History Museum London, London, United Kingdom
| | - Graham J Slater
- Department of the Geophysical Sciences, University of Chicago, Chicago, IL, United States
| | - Natalie Cooper
- Science Group, Natural History Museum London, London, United Kingdom
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Rule JP, Burin G, Park T. A quantitative test of the "Ecomorphotype Hypothesis" for fossil true seals (Family Phocidae). PeerJ 2024; 12:e17592. [PMID: 38912040 PMCID: PMC11193399 DOI: 10.7717/peerj.17592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Accepted: 05/28/2024] [Indexed: 06/25/2024] Open
Abstract
The fossil record of true seals (Family Phocidae) is mostly made up of isolated bones, some of which are type specimens. Previous studies have sought to increase referral of non-overlapping and unrelated fossils to these taxa using the 'Ecomorphotype Hypothesis', which stipulates that certain differences in morphology between taxa represent adaptations to differing ecology. On this basis, bulk fossil material could be lumped to a specific ecomorphotype, and then referred to species in that ecomorphotype, even if they are different bones. This qualitative and subjective method has been used often to expand the taxonomy of fossil phocids, but has never been quantitatively tested. We test the proposed ecomorphotypes using morphometric analysis of fossil and extant northern true seal limb bones, specifically principal components analysis and discriminant function analysis. A large amount of morphological overlap between ecomorphotypes, and poor discrimination between them, suggests that the 'Ecomorphotype Hypothesis' is not a valid approach. Further, the analysis failed to assign fossils to ecomorphotypes designated in previous studies, with some fossils from the same taxa being designated as different ecomorphotypes. The failure of this approach suggests that all fossils referred using this method should be considered to have unknown taxonomic status. In light of this, and previous findings that phocid limb bones have limited utility as type specimens, we revise the status of named fossil phocid species. We conclude that the majority of named fossil phocid taxa should be considered nomina dubia.
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Affiliation(s)
- James Patrick Rule
- Sciences Group, Natural History Museum, London, United Kingdom
- School of Biological Sciences, Monash University, Clayton, Victoria, Australia
| | - Gustavo Burin
- Sciences Group, Natural History Museum, London, United Kingdom
| | - Travis Park
- Sciences Group, Natural History Museum, London, United Kingdom
- School of Biological Sciences, Monash University, Clayton, Victoria, Australia
- Sciences, Museums Victoria Research Institute, Museums Victoria, Melbourne, Victoria, Australia
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Wilenzik IV, Barger BB, Pyron RA. Fossil-informed biogeographic analysis suggests Eurasian regionalization in crown Squamata during the early Jurassic. PeerJ 2024; 12:e17277. [PMID: 38708352 PMCID: PMC11067913 DOI: 10.7717/peerj.17277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Accepted: 04/01/2024] [Indexed: 05/07/2024] Open
Abstract
Background Squamata (lizards, snakes, and amphisbaenians) is a Triassic lineage with an extensive and complex biogeographic history, yet no large-scale study has reconstructed the ancestral range of early squamate lineages. The fossil record indicates a broadly Pangaean distribution by the end- Cretaceous, though many lineages (e.g., Paramacellodidae, Mosasauria, Polyglyphanodontia) subsequently went extinct. Thus, the origin and occupancy of extant radiations is unclear and may have been localized within Pangaea to specific plates, with potential regionalization to distinct Laurasian and Gondwanan landmasses during the Mesozoic in some groups. Methods We used recent tectonic models to code extant and fossil squamate distributions occurring on nine discrete plates for 9,755 species, with Jurassic and Cretaceous fossil constraints from three extinct lineages. We modeled ancestral ranges for crown Squamata from an extant-only molecular phylogeny using a suite of biogeographic models accommodating different evolutionary processes and fossil-based node constraints from known Jurassic and Cretaceous localities. We hypothesized that the best-fit models would not support a full Pangaean distribution (i.e., including all areas) for the origin of crown Squamata, but would instead show regionalization to specific areas within the fragmenting supercontinent, likely in the Northern Hemisphere where most early squamate fossils have been found. Results Incorporating fossil data reconstructs a localized origin within Pangaea, with early regionalization of extant lineages to Eurasia and Laurasia, while Gondwanan regionalization did not occur until the middle Cretaceous for Alethinophidia, Scolecophidia, and some crown Gekkotan lineages. While the Mesozoic history of extant squamate biogeography can be summarized as a Eurasian origin with dispersal out of Laurasia into Gondwana, their Cenozoic history is complex with multiple events (including secondary and tertiary recolonizations) in several directions. As noted by previous authors, squamates have likely utilized over-land range expansion, land-bridge colonization, and trans-oceanic dispersal. Tropical Gondwana and Eurasia hold more ancient lineages than the Holarctic (Rhineuridae being a major exception), and some asymmetries in colonization (e.g., to North America from Eurasia during the Cenozoic through Beringia) deserve additional study. Future studies that incorporate fossil branches, rather than as node constraints, into the reconstruction can be used to explore this history further.
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Affiliation(s)
- Ian V. Wilenzik
- Department of Biology, George Washington University, Washington D.C., United States of America
| | - Benjamin B. Barger
- Department of Biology, George Washington University, Washington D.C., United States of America
| | - R. Alexander Pyron
- Department of Biology, George Washington University, Washington D.C., United States of America
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Rule JP, Duncan RJ, Marx FG, Pollock TI, Evans AR, Fitzgerald EM. Giant baleen whales emerged from a cold southern cradle. Proc Biol Sci 2023; 290:20232177. [PMID: 38113937 PMCID: PMC10730287 DOI: 10.1098/rspb.2023.2177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 11/22/2023] [Indexed: 12/21/2023] Open
Abstract
Baleen whales (mysticetes) include the largest animals on the Earth. How they achieved such gigantic sizes remains debated, with previous research focusing primarily on when mysticetes became large, rather than where. Here, we describe an edentulous baleen whale fossil (21.12-16.39 mega annum (Ma)) from South Australia. With an estimated body length of 9 m, it is the largest mysticete from the Early Miocene. Analysing body size through time shows that ancient baleen whales from the Southern Hemisphere were larger than their northern counterparts. This pattern seemingly persists for much of the Cenozoic, even though southern specimens contribute only 19% to the global mysticete fossil record. Our findings contrast with previous ideas of a single abrupt shift towards larger size during the Plio-Pleistocene, which we here interpret as a glacially driven Northern Hemisphere phenomenon. Our results highlight the importance of incorporating Southern Hemisphere fossils into macroevolutionary patterns, especially in light of the high productivity of Southern Ocean environments.
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Affiliation(s)
- James P. Rule
- School of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia
- Sciences, Museums Victoria Research Institute, Museums Victoria, Melbourne, Victoria 3001, Australia
- Department of Life Sciences, Natural History Museum, London SW7 5BD, UK
| | - Ruairidh J. Duncan
- School of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia
- Sciences, Museums Victoria Research Institute, Museums Victoria, Melbourne, Victoria 3001, Australia
| | - Felix G. Marx
- Museum of New Zealand Te Papa Tongarewa, Wellington 6011, New Zealand
- Department of Geology, University of Otago, Dunedin 9016, New Zealand
| | - Tahlia I. Pollock
- School of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia
- Department of Anatomy and Developmental Biology, Monash University, Victoria, Australia
| | - Alistair R. Evans
- School of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia
- Sciences, Museums Victoria Research Institute, Museums Victoria, Melbourne, Victoria 3001, Australia
| | - Erich M.G. Fitzgerald
- School of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia
- Sciences, Museums Victoria Research Institute, Museums Victoria, Melbourne, Victoria 3001, Australia
- Department of Life Sciences, Natural History Museum, London SW7 5BD, UK
- National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA
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Benites-Palomino A, Vélez-Juarbe J, De Gracia C, Jaramillo C. Bridging two oceans: small toothed cetaceans (Odontoceti) from the Late Miocene Chagres Formation, eastern Caribbean (Colon, Panama). Biol Lett 2023; 19:20230124. [PMID: 37340808 PMCID: PMC10282590 DOI: 10.1098/rsbl.2023.0124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 05/30/2023] [Indexed: 06/22/2023] Open
Abstract
Fossil cetaceans are often found in Miocene marine outcrops across the globe. However, because this record is not homogeneous, the dissimilar increase in occurrences, along with the sampling bias has created regions with extensive records and others with great scarcity. Among these, the Caribbean has remained enigmatic due to the lack of well-preserved cetacean fossils. Here, we report new Caribbean fossil cetaceans from the Upper Miocene Chagres Formation exposed along Piña beach, Eastern Panama, including a scaphokogiine kogiid, an Acrophyseter-like physeteroid and the phocoenid Piscolithax. Along with previous records of the iniid Isthminia panamensis and the kogiine Nanokogia isthmia, the Chagres cetacean fauna shows some similarities with other Late Miocene cetacean communities such as the Californias in the North Pacific, although their closest affinities lie with the eastern South Pacific Pisco Formation, Peru. Such findings indicate that though deep and intermediate Caribbean-Pacific water interchange was reduced by the Middle Miocene due to the shallowing of the Central American Seaway, shallow waters marine connection that persisted until the Pliocene might have facilitated the dispersal of coastal species across both sides of the Isthmus.
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Affiliation(s)
- Aldo Benites-Palomino
- Paläontologisches Institut und Museum, Universität Zürich, Karl-Schmid-Strasse 4, 8006 Zürich, Switzerland
- Center for Tropical Paleoecology and Archeology, Smithsonian Tropical Research Institute, Balboa, Ancón 0843-03092, Panama
- Departamento de Paleontología de Vertebrados, Museo de Historia Natural-Universidad Nacional Mayor de San Marcos, Avenida Arenales 1256, Lima 11, Perú
| | - Jorge Vélez-Juarbe
- Department of Mammalogy, Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, CA 90007, USA
| | - Carlos De Gracia
- Center for Tropical Paleoecology and Archeology, Smithsonian Tropical Research Institute, Balboa, Ancón 0843-03092, Panama
- Department of Palaeontology, Faculty of Earth Sciences, Geography and Astronomy, University of Vienna, Josef Holaubek Platz 2 (UZA II)/2A323, 1090 Vienna, Austria
- Vienna Doctoral School of Ecology and Evolution (VDSEE), University of Vienna, Djerassiplatz 1, 1030 Vienna, Austria
| | - Carlos Jaramillo
- Center for Tropical Paleoecology and Archeology, Smithsonian Tropical Research Institute, Balboa, Ancón 0843-03092, Panama
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Wüster W, Thomson SA, O’shea M, Kaiser H. Confronting taxonomic vandalism in biology: conscientious community self-organization can preserve nomenclatural stability. Biol J Linn Soc Lond 2021. [DOI: 10.1093/biolinnean/blab009] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
Self-published taxon descriptions, bereft of a basis of evidence, are a long-standing problem in taxonomy. The problem derives in part from the Principle of Priority in the International Code of Zoological Nomenclature, which forces the use of the oldest available nomen irrespective of scientific merit. This provides a route to ‘immortality’ for unscrupulous individuals through the mass-naming of taxa without scientific basis, a phenomenon referred to as taxonomic vandalism. Following a flood of unscientific taxon namings, in 2013 a group of concerned herpetologists organized a widely supported, community-based campaign to treat these nomina as lying outside the permanent scientific record, and to ignore and overwrite them as appropriate. Here, we review the impact of these proposals over the past 8 years. We identified 59 instances of unscientific names being set aside and overwritten with science-based names (here termed aspidonyms), and 1087 uses of these aspidonyms, compared to one instance of preference for the overwritten names. This shows that when there is widespread consultation and agreement across affected research communities, setting aside certain provisions of the Code can constitute an effective last resort defence against taxonomic vandalism and enhance the universality and stability of the scientific nomenclature.
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Affiliation(s)
- Wolfgang Wüster
- Molecular Ecology and Fisheries Genetics Laboratory, School of Natural Sciences, Bangor University, Bangor LL57 2UW, UK
| | - Scott A Thomson
- Museu de Zoologia da Universidade de São Paulo, Divisão de Vertebrados (Herpetologia), Avenida Nazaré, 481, Ipiranga, 04263-000, São Paulo, SP, Brazil
- Chelonian Research Institute, 401 South Central Avenue, Oviedo, FL 32765, USA
| | - Mark O’shea
- Faculty of Science and Engineering, University of Wolverhampton, Wulfruna Street, Wolverhampton WV1 1LY, UK
| | - Hinrich Kaiser
- Department of Vertebrate Zoology, Zoologisches Forschungsmuseum Alexander Koenig, Adenauerallee 160, 53113 Bonn, Germany
- Department of Biology, Victor Valley College, 18422 Bear Valley Road, Victorville, CA 92395, USA
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Rule JP, Adams JW, Marx FG, Evans AR, Tennyson AJD, Scofield RP, Fitzgerald EMG. First monk seal from the Southern Hemisphere rewrites the evolutionary history of true seals. Proc Biol Sci 2020; 287:20202318. [PMID: 33171079 DOI: 10.1098/rspb.2020.2318] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Living true seals (phocids) are the most widely dispersed semi-aquatic marine mammals, and comprise geographically separate northern (phocine) and southern (monachine) groups. Both are thought to have evolved in the North Atlantic, with only two monachine lineages-elephant seals and lobodontins-subsequently crossing the equator. The third and most basal monachine tribe, the monk seals, have hitherto been interpreted as exclusively northern and (sub)tropical throughout their entire history. Here, we describe a new species of extinct monk seal from the Pliocene of New Zealand, the first of its kind from the Southern Hemisphere, based on one of the best-preserved and richest samples of seal fossils worldwide. This unanticipated discovery reveals that all three monachine tribes once coexisted south of the equator, and forces a profound revision of their evolutionary history: rather than primarily diversifying in the North Atlantic, monachines largely evolved in the Southern Hemisphere, and from this southern cradle later reinvaded the north. Our results suggest that true seals crossed the equator over eight times in their history. Overall, they more than double the age of the north-south dichotomy characterizing living true seals and confirms a surprisingly recent major change in southern phocid diversity.
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Affiliation(s)
- James P Rule
- Department of Anatomy and Developmental Biology, Victoria 3800, Australia.,Geosciences, Museums Victoria, Melbourne, Victoria 3001, Australia
| | - Justin W Adams
- Department of Anatomy and Developmental Biology, Victoria 3800, Australia
| | - Felix G Marx
- Museum of New Zealand Te Papa Tongarewa, Wellington 6011, New Zealand.,Department of Geology, University of Otago, Dunedin 9016, New Zealand
| | - Alistair R Evans
- School of Biological Sciences, Monash University, Victoria 3800, Australia.,Geosciences, Museums Victoria, Melbourne, Victoria 3001, Australia
| | - Alan J D Tennyson
- Museum of New Zealand Te Papa Tongarewa, Wellington 6011, New Zealand
| | | | - Erich M G Fitzgerald
- School of Biological Sciences, Monash University, Victoria 3800, Australia.,Geosciences, Museums Victoria, Melbourne, Victoria 3001, Australia.,National Museum of Natural History, Smithsonian Institution, Washington DC 20013-7012, USA
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Rule JP, Adams JW, Rovinsky DS, Hocking DP, Evans AR, Fitzgerald EMG. A new large-bodied Pliocene seal with unusual cutting teeth. ROYAL SOCIETY OPEN SCIENCE 2020; 7:201591. [PMID: 33391813 PMCID: PMC7735334 DOI: 10.1098/rsos.201591] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Accepted: 10/14/2020] [Indexed: 05/24/2023]
Abstract
Today, monachine seals display the largest body sizes in pinnipeds. However, the evolution of larger body sizes has been difficult to assess due to the murky taxonomic status of fossil seals, including fossils referred to Callophoca obscura, a species thought to be present on both sides of the North Atlantic during the Neogene. Several studies have recently called into question the taxonomic validity of these fossils, especially those from the USA, as the fragmentary lectotype specimen from Belgium is of dubious diagnostic value. We find that the lectotype isolated humerus of C. obscura is too uninformative; thus, we designate C. obscura as a nomen dubium. More complete cranial and postcranial specimens from the Pliocene Yorktown Formation are described as a new taxon, Sarcodectes magnus. The cranial specimens display adaptations towards an enhanced ability to cut or chew prey that are unique within Phocidae, and estimates indicate S. magnus to be around 2.83 m in length. A parsimony phylogenetic analysis found S. magnus is a crown monachine. An ancestral state estimation of body length indicates that monachines did not have a remarkable size increase until the evolution of the lobodontins and miroungins.
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Affiliation(s)
- James P. Rule
- Department of Anatomy and Developmental Biology, Melbourne, Victoria 3800, Australia
- Palaeontology, Museums Victoria, Melbourne, Victoria 3001, Australia
| | - Justin W. Adams
- Department of Anatomy and Developmental Biology, Melbourne, Victoria 3800, Australia
| | - Douglass S. Rovinsky
- Department of Anatomy and Developmental Biology, Melbourne, Victoria 3800, Australia
| | - David P. Hocking
- School of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia
- Palaeontology, Museums Victoria, Melbourne, Victoria 3001, Australia
| | - Alistair R. Evans
- School of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia
- Palaeontology, Museums Victoria, Melbourne, Victoria 3001, Australia
| | - Erich M. G. Fitzgerald
- School of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia
- Palaeontology, Museums Victoria, Melbourne, Victoria 3001, Australia
- National Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA
- Department of Life Sciences, Natural History Museum, London SW7 5BD, UK
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Rule JP, Adams JW, Fitzgerald EMG. Colonization of the ancient southern oceans by small-sized Phocidae: new evidence from Australia. Zool J Linn Soc 2020. [DOI: 10.1093/zoolinnean/zlaa075] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Abstract
Most of the diversity of extant southern true seals (Phocidae: Monachinae) is present in the Southern Ocean, but a poor fossil record means that the origin of this fauna remains unknown. Australia represents a large gap in the record bordering the Southern Ocean that could possibly inform on the origins of the extant Antarctic monachines, with most known fossils remaining undescribed. Here we describe the oldest Australian fossil pinniped assemblage, from the Late Miocene to the Early Pliocene of Beaumaris. Two fossils are referrable to Pinnipedia, five (possibly six) to Phocidae and a humerus is referrable to Monachinae. The humerus is not referrable to any extant tribe, potentially representing an archaic monachine. The description of this assemblage is consistent with the Neogene pinniped fauna of Australia being exclusively monachine before the arrival of otariids (fur seals and sea lions). The Beaumaris humerus, along with other Neogene phocids from the Southern Ocean margins, were smaller than their extant Antarctic relatives, possibly driven by longer food chains with less energy efficiency between trophic levels. This suggests that small archaic phocids potentially used the Southern Ocean as a means of dispersal before the arrival of extant Antarctic monachines.
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Affiliation(s)
- James P Rule
- Department of Anatomy and Developmental Biology, Biomedicine Discovery Institute, Monash University, Melbourne, Victoria, Australia
- Vertebrate Palaeontology, Museums Victoria, Melbourne, Victoria, Australia
| | - Justin W Adams
- Department of Anatomy and Developmental Biology, Biomedicine Discovery Institute, Monash University, Melbourne, Victoria, Australia
| | - Erich M G Fitzgerald
- Vertebrate Palaeontology, Museums Victoria, Melbourne, Victoria, Australia
- School of Biological Sciences, Monash University, Melbourne, Victoria, Australia
- National Museum of Natural History, Smithsonian Institution, Washington DC, USA
- Department of Life Sciences, Natural History Museum, London, UK
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