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Simons AL, Theroux S, Osborne M, Nuzhdin S, Mazor R, Steele J. Zeta diversity patterns in metabarcoded lotic algal assemblages as a tool for bioassessment. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2023; 33:e2812. [PMID: 36708145 DOI: 10.1002/eap.2812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Revised: 12/07/2022] [Accepted: 12/20/2022] [Indexed: 06/18/2023]
Abstract
Assessments of the ecological health of algal assemblages in streams typically focus on measures of their local diversity and classify individuals by morphotaxonomy. Such assemblages are often connected through various ecological processes, such as dispersal, and may be more accurately assessed as components of regional-, rather than local-scale assemblages. With recent declines in the costs of sequencing and computation, it has also become increasingly feasible to use metabarcoding to more accurately classify algal species and perform regional-scale bioassessments. Recently, zeta diversity has been explored as a novel method of constructing regional bioassessments for groups of streams. Here, we model the use of zeta diversity to investigate whether stream health can be determined by the landscape diversity of algal assemblages. We also compare the use of DNA metabarcoding and morphotaxonomy classifications in these zeta diversity-based bioassessments of regional stream health. From 96 stream samples in California, we used various orders of zeta diversity to construct models of biotic integrity for multiple assemblages of diatoms, as well as hybrid assemblages of diatoms in combination with soft-bodied algae, using taxonomy data generated with both DNA sequencing as well as traditional morphotaxonomic approaches. We compared our ability to evaluate the ecological health of streams with the performance of multiple algal indices of biological condition. Our zeta diversity-based models of regional biotic integrity were more strongly correlated with existing indices for algal assemblages classified using metabarcoding compared to morphotaxonomy. Metabarcoding for diatoms and hybrid algal assemblages involved rbcL and 18S V9 primers, respectively. Importantly, we also found that these algal assemblages, independent of the classification method, are more likely to be assembled under a process of niche differentiation rather than stochastically. Taken together, these results suggest the potential for zeta diversity patterns of algal assemblages classified using metabarcoding to inform stream bioassessments.
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Affiliation(s)
- Ariel Levi Simons
- Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Susanna Theroux
- Southern California Coastal Water Research Project, Costa Mesa, California, USA
| | - Melisa Osborne
- Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Sergey Nuzhdin
- Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Raphael Mazor
- Southern California Coastal Water Research Project, Costa Mesa, California, USA
| | - Joshua Steele
- Southern California Coastal Water Research Project, Costa Mesa, California, USA
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Brentjens ET, Bratt AR. Beneath the surface: spatial and temporal trends in water quality and its impacts on algal community composition in the Albemarle Sound, North Carolina. AQUATIC ECOLOGY 2023; 57:243-262. [PMID: 37223620 PMCID: PMC10016187 DOI: 10.1007/s10452-023-10008-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 02/11/2023] [Indexed: 05/25/2023]
Abstract
Urban and agricultural expansion and intensification pose a critical threat to water quality and aquatic ecosystems. Increased nutrient loading into waterways combined with warming temperatures due to climate change have increased eutrophication and algal blooms. The relationship between land use, nutrient availability, and algal growth can vary dramatically across space and time, but few studies have captured this variation. The goal of this research is to assess water quality across time and disparate land uses, and its influence on algal community composition in the Albemarle Sound, a brackish water estuary in North Carolina. We collected water quality data from 21 sites across the sound, visiting six sites in Chowan County biweekly and 15 other sites twice between June and August 2020. Water samples from each site were tested for nitrate, phosphate, ammonia, bicarbonate, and total phosphorus (TP). Preserved algal samples from the six Chowan County sites were enumerated under a microscope to estimate genus richness and biomass. In the Chowan County sites, phosphorus increased and nitrate decreased over the course of the summer. Across all sites, TP increased with development and agricultural land use. These results suggest that sources of nitrogen and phosphorus in the sound differ. Algal richness increased with nitrate concentration and decreased with precipitation while biomass increased with water temperature. Our results indicate that climate change impacts, particularly increasing temperatures and extreme precipitation, influence how land use, water quality, and algal community composition interact. These data demonstrate the co-benefits of mitigating climate change in developing management strategies to reduce algal blooms. Supplementary Information The online version contains supplementary material available at 10.1007/s10452-023-10008-y.
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Affiliation(s)
- Emma T. Brentjens
- Department of Environmental Studies, Davidson College, Davidson, NC USA
| | - Anika R. Bratt
- Department of Environmental Studies, Davidson College, Davidson, NC USA
- Department of Environmental Studies, Macalester College, Saint Paul, MN USA
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Passy SI. Framework for community functioning: synthesis of stress gradient and resource partitioning concepts. PeerJ 2017; 5:e3885. [PMID: 29018618 PMCID: PMC5628606 DOI: 10.7717/peerj.3885] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2017] [Accepted: 09/13/2017] [Indexed: 11/20/2022] Open
Abstract
To understand how communities function and generate abundance, I develop a framework integrating elements from the stress gradient and resource partitioning concepts. The framework suggests that guild abundance depends on environmental and spatial factors but also on inter-guild interactions (competitor or facilitator richness), which can alter the fundamental niche of constituent species in negative (competition) or positive direction (facilitation). Consequently, the environmental and spatial mechanisms driving guild abundance would differ across guilds and interaction modes. Using continental data on stream diatoms and physico-chemistry, the roles of these mechanisms were tested under three interaction modes—shared preference, distinct preference, and facilitative, whereby pairs of guilds exhibited, respectively, a dominance-tolerance tradeoff along a eutrophication gradient, specialization along a pH gradient, or a donor-recipient relationship along a nitrogen gradient. Representative of the shared preference mode were the motile (dominant) and low profile (tolerant) guilds, of the distinct preference mode—the acidophilous and alkaliphilous (low profile) guilds, and of the facilitative mode—nitrogen fixers (donors) and motile species (recipients). In each mode, the influences of environment, space (latitude and longitude), and competitor or facilitator richness on guild density were assessed by variance partitioning. Pure environment constrained most strongly the density of the dominant, the acidophilous, and the recipient guild in the shared preference, distinct preference, and facilitative mode, respectively, while spatial effects were important only for the low profile guild. Higher competitor richness was associated with lower density of the tolerant guild in the shared preference mode, both guilds in the distinct preference mode, and the donor guild in the facilitative mode. Conversely, recipient density in the facilitative mode increased with donor richness in stressful nitrogen-poor environments. Thus, diatom guild abundance patterns were determined primarily by biotic and/or environmental impacts and, with the exception of the low profile guild, were insensitive to spatial effects. This framework identifies major sources of variability in diatom guild abundance with implications for the understanding of biodiversity-ecosystem functioning.
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Affiliation(s)
- Sophia I Passy
- Department of Biology, University of Texas at Arlington, Arlington, TX, United States of America
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Török P, T‐Krasznai E, B‐Béres V, Bácsi I, Borics G, Tóthmérész B. Functional diversity supports the biomass–diversity humped‐back relationship in phytoplankton assemblages. Funct Ecol 2016. [DOI: 10.1111/1365-2435.12631] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Péter Török
- MTA‐DE Biodiversity and Ecosystem Services Research Group PO Box 71 H‐4010 Debrecen Hungary
| | - Enikő T‐Krasznai
- Environmental Laboratory Department of Environment and Conservation Hajdú‐Bihar County Government Office Hatvan street 16 H‐4025 Debrecen Hungary
| | - Viktória B‐Béres
- Environmental Laboratory Department of Environment and Conservation Hajdú‐Bihar County Government Office Hatvan street 16 H‐4025 Debrecen Hungary
| | - István Bácsi
- Department of Hydrobiology University of Debrecen PO Box 57 H‐4010 Debrecen Hungary
| | - Gábor Borics
- Department of Tisza Research MTA Centre for Ecological Research 18/c., Bem square H‐4026 Debrecen Hungary
| | - Béla Tóthmérész
- MTA‐DE Biodiversity and Ecosystem Services Research Group PO Box 71 H‐4010 Debrecen Hungary
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Pound KL, Lawrence GB, Passy SI. Wetlands serve as natural sources for improvement of stream ecosystem health in regions affected by acid deposition. GLOBAL CHANGE BIOLOGY 2013; 19:2720-2728. [PMID: 23704070 DOI: 10.1111/gcb.12265] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2013] [Accepted: 05/06/2013] [Indexed: 06/02/2023]
Abstract
For over 40 years, acid deposition has been recognized as a serious international environmental problem, but efforts to restore acidified streams and biota have had limited success. The need to better understand the effects of different sources of acidity on streams has become more pressing with the recent increases in surface water organic acids, or 'brownification,' associated with climate change and decreased inorganic acid deposition. Here, we carried out a large scale multi-seasonal investigation in the Adirondacks, one of the most acid-impacted regions in the United States, to assess how acid stream producers respond to local and watershed influences and whether these influences can be used in acidification remediation. We explored the pathways of wetland control on aluminum chemistry and diatom taxonomic and functional composition. We demonstrate that streams with larger watershed wetlands have higher organic content, lower concentrations of acidic anions, and lower ratios of inorganic to organic monomeric aluminum, all beneficial for diatom biodiversity and guilds producing high biomass. Although brownification has been viewed as a form of pollution, our results indicate that it may be a stimulating force for biofilm producers with potentially positive consequences for higher trophic levels. Our research also reveals that the mechanism of watershed control of local stream diatom biodiversity through wetland export of organic matter is universal in running waters, operating not only in hard streams, as previously reported, but also in acid streams. Our findings that the negative impacts of acid deposition on Adirondack stream chemistry and biota can be mitigated by wetlands have important implications for biodiversity conservation and stream ecosystem management. Future acidification research should focus on the potential for wetlands to improve stream ecosystem health in acid-impacted regions and their direct use in stream restoration, for example, through stream rechanneling or wetland construction in appropriate hydrologic settings.
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Affiliation(s)
- Katrina L Pound
- Department of Biology, University of Texas, Arlington, TX 76019-0498, USA
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Abstract
For over 200 years, scientists have recognized the nearly ubiquitous poleward decline of species richness, but none of the theories explaining its occurrence has been widely accepted. In this continental study of U.S. running waters, I report an exception to this general pattern, i.e., a U-shaped latitudinal distribution of diatom richness (DR), equally high in subtropical and temperate regions. This gradient is linked unequivocally to corresponding trends in basin and stream properties with impact on resource supply. Specifically, DR distribution was related to wetland area, soil composition, and forest cover in the watershed, which affected iron, manganese, and macronutrient fluxes into streams. These results imply that the large-scale biodiversity patterns of freshwater protists, which are seasonal, highly dispersive, and sheltered by their environment from extreme temperature fluctuations, are resource driven in contrast to more advanced, perennial, and terrestrial organisms with biogeography strongly influenced by climate. The finding that wetlands, through iron export, control DR in streams has important environmental implications. It suggests that wetlands loss, already exceeding 52 million hectares in the conterminous United States alone, poses a threat not only to local biota, but also to biodiversity of major stream producers with potentially harmful consequences for the entire ecosystem.
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Affiliation(s)
- Sophia I Passy
- Department of Biology, University of Texas at Arlington, Box 19498, Arlington, Texas 76019-0498, USA.
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Passy SI. Continental diatom biodiversity in stream benthos declines as more nutrients become limiting. Proc Natl Acad Sci U S A 2008; 105:9663-7. [PMID: 18599459 PMCID: PMC2474509 DOI: 10.1073/pnas.0802542105] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2008] [Indexed: 11/18/2022] Open
Abstract
Biodiversity of both terrestrial ecosystems and lacustrine phytoplankton increases with niche dimensionality, which can be determined by the number of limiting resources (NLR) in the environment. In the present continental study, I tested whether niche dimensionality and, with this species, richness scale positively with NLR in running waters. Diatom richness in 2,426 benthic and 383 planktonic communities from 760 and 127 distinct localities, respectively, was examined as a function of NLR, including basic cations, silica, iron, ammonia, nitrate, and dissolved phosphorus. The patterns found in the two communities were opposite: as more resources became limiting, diatom richness declined in the benthos but increased in the phytoplankton. The divergence of benthic from both planktonic and terrestrial communities is attributed to the complex spatial organization of the benthos, generating strong internal resource gradients. Differential stress tolerance among benthic diatoms allows substantial overgrowth, which greatly reduces nutrient transport to the biofilm base and can be supported only by high ambient resource levels. Therefore, niche dimensionality in the benthos increases with the number of resources at high supply. These findings provide a mechanistic explanation of the well documented phenomenon of increased species richness after fertilization in freshwater as opposed to terrestrial ecosystems. Clearly, however, new theoretical approaches, retaining resource availability as an environmental constraint but incorporating a trade-off between tolerance and spatial positioning, are necessary to address coexistence in one of the major producer communities in streams, the algae.
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Affiliation(s)
- Sophia I Passy
- Department of Biology, University of Texas at Arlington, Box 19498, Arlington, TX 76019-0498, USA.
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Passy SI. SPECIES SIZE AND DISTRIBUTION JOINTLY AND DIFFERENTIALLY DETERMINE DIATOM DENSITIES IN U.S. STREAMS. Ecology 2008; 89:475-84. [DOI: 10.1890/07-0405.1] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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