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For: Lake JA, Skophammer RG, Herbold CW, Servin JA. Genome beginnings: rooting the tree of life. Philos Trans R Soc Lond B Biol Sci 2009;364:2177-85. [PMID: 19571238 DOI: 10.1098/rstb.2009.0035] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
Number Cited by Other Article(s)
1
Mahendrarajah TA, Moody ERR, Schrempf D, Szánthó LL, Dombrowski N, Davín AA, Pisani D, Donoghue PCJ, Szöllősi GJ, Williams TA, Spang A. ATP synthase evolution on a cross-braced dated tree of life. Nat Commun 2023;14:7456. [PMID: 37978174 PMCID: PMC10656485 DOI: 10.1038/s41467-023-42924-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Accepted: 10/25/2023] [Indexed: 11/19/2023]  Open
2
Spang A, Mahendrarajah TA, Offre P, Stairs CW. Evolving perspective on the origin and diversification of cellular life and the virosphere. Genome Biol Evol 2022;14:6537539. [PMID: 35218347 PMCID: PMC9169541 DOI: 10.1093/gbe/evac034] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/18/2022] [Indexed: 11/14/2022]  Open
3
Devos DP. Reconciling Asgardarchaeota Phylogenetic Proximity to Eukaryotes and Planctomycetes Cellular Features in the Evolution of Life. Mol Biol Evol 2021;38:3531-3542. [PMID: 34229349 PMCID: PMC8382908 DOI: 10.1093/molbev/msab186] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
4
Coleman GA, Davín AA, Mahendrarajah TA, Szánthó LL, Spang A, Hugenholtz P, Szöllősi GJ, Williams TA. A rooted phylogeny resolves early bacterial evolution. Science 2021;372:372/6542/eabe0511. [PMID: 33958449 DOI: 10.1126/science.abe0511] [Citation(s) in RCA: 89] [Impact Index Per Article: 29.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 11/05/2020] [Accepted: 04/01/2021] [Indexed: 12/17/2022]
5
Katz LA. Illuminating the first bacteria. Science 2021;372:574-575. [PMID: 33958464 DOI: 10.1126/science.abh2814] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
6
Heaps SE, Nye TMW, Boys RJ, Williams TA, Cherlin S, Embley TM. Generalizing rate heterogeneity across sites in statistical phylogenetics. STAT MODEL 2020. [DOI: 10.1177/1471082x19829937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
7
Long X, Xue H, Wong JTF. Descent of Bacteria and Eukarya From an Archaeal Root of Life. Evol Bioinform Online 2020;16:1176934320908267. [PMID: 32636606 PMCID: PMC7313328 DOI: 10.1177/1176934320908267] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Accepted: 01/30/2020] [Indexed: 02/05/2023]  Open
8
Cavalier-Smith T, Chao EEY. Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria). PROTOPLASMA 2020. [PMID: 31900730 DOI: 10.1007/s00709-019-01442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
9
Cavalier-Smith T, Chao EEY. Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria). PROTOPLASMA 2020;257:621-753. [PMID: 31900730 PMCID: PMC7203096 DOI: 10.1007/s00709-019-01442-7] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Accepted: 09/19/2019] [Indexed: 05/02/2023]
10
Williams TA, Cox CJ, Foster PG, Szöllősi GJ, Embley TM. Phylogenomics provides robust support for a two-domains tree of life. Nat Ecol Evol 2020;4:138-147. [PMID: 31819234 PMCID: PMC6942926 DOI: 10.1038/s41559-019-1040-x] [Citation(s) in RCA: 119] [Impact Index Per Article: 29.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2019] [Accepted: 10/15/2019] [Indexed: 11/09/2022]
11
Zhu Q, Mai U, Pfeiffer W, Janssen S, Asnicar F, Sanders JG, Belda-Ferre P, Al-Ghalith GA, Kopylova E, McDonald D, Kosciolek T, Yin JB, Huang S, Salam N, Jiao JY, Wu Z, Xu ZZ, Cantrell K, Yang Y, Sayyari E, Rabiee M, Morton JT, Podell S, Knights D, Li WJ, Huttenhower C, Segata N, Smarr L, Mirarab S, Knight R. Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nat Commun 2019;10:5477. [PMID: 31792218 PMCID: PMC6889312 DOI: 10.1038/s41467-019-13443-4] [Citation(s) in RCA: 148] [Impact Index Per Article: 29.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2019] [Accepted: 11/06/2019] [Indexed: 11/10/2022]  Open
12
Richardson TT, Stevens D, Pelliciari S, Harran O, Sperlea T, Murray H. Identification of a basal system for unwinding a bacterial chromosome origin. EMBO J 2019;38:e101649. [PMID: 31267560 PMCID: PMC6669920 DOI: 10.15252/embj.2019101649] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Revised: 06/06/2019] [Accepted: 06/07/2019] [Indexed: 01/03/2023]  Open
13
Coleman GA, Pancost RD, Williams TA. Investigating the Origins of Membrane Phospholipid Biosynthesis Genes Using Outgroup-Free Rooting. Genome Biol Evol 2019;11:883-898. [PMID: 30753429 PMCID: PMC6431249 DOI: 10.1093/gbe/evz034] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/07/2019] [Indexed: 12/16/2022]  Open
14
Heaps SE, Nye TMW, Boys RJ, Williams TA, Cherlin S, Embley TM. Generalizing rate heterogeneity across sites in statistical phylogenetics. STAT MODEL 2019. [DOI: 10.1177/1471082x18829937] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
15
Genome size evolution in the Archaea. Emerg Top Life Sci 2018;2:595-605. [PMID: 33525826 PMCID: PMC7289037 DOI: 10.1042/etls20180021] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Revised: 09/26/2018] [Accepted: 09/28/2018] [Indexed: 11/17/2022]
16
Caetano-Anollés G, Nasir A, Kim KM, Caetano-Anollés D. Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions. Evol Bioinform Online 2018;14:1176934318805101. [PMID: 30364468 PMCID: PMC6196624 DOI: 10.1177/1176934318805101] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2018] [Accepted: 09/05/2018] [Indexed: 12/25/2022]  Open
17
Levasseur A, Merhej V, Baptiste E, Sharma V, Pontarotti P, Raoult D. The Rhizome of Lokiarchaeota Illustrates the Mosaicity of Archaeal Genomes. Genome Biol Evol 2018;9:2635-2639. [PMID: 29048529 PMCID: PMC5737619 DOI: 10.1093/gbe/evx208] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/26/2017] [Indexed: 12/23/2022]  Open
18
Miller JM, Chaudhary H, Marsee JD. Phylogenetic analysis predicts structural divergence for proteobacterial ClpC proteins. J Struct Biol 2017;201:52-62. [PMID: 29129755 DOI: 10.1016/j.jsb.2017.11.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Revised: 11/06/2017] [Accepted: 11/08/2017] [Indexed: 12/29/2022]
19
Akanuma S. Characterization of Reconstructed Ancestral Proteins Suggests a Change in Temperature of the Ancient Biosphere. Life (Basel) 2017;7:life7030033. [PMID: 28783077 PMCID: PMC5617958 DOI: 10.3390/life7030033] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Revised: 08/02/2017] [Accepted: 08/03/2017] [Indexed: 01/02/2023]  Open
20
Williams TA, Szöllősi GJ, Spang A, Foster PG, Heaps SE, Boussau B, Ettema TJG, Embley TM. Integrative modeling of gene and genome evolution roots the archaeal tree of life. Proc Natl Acad Sci U S A 2017;114:E4602-E4611. [PMID: 28533395 PMCID: PMC5468678 DOI: 10.1073/pnas.1618463114] [Citation(s) in RCA: 146] [Impact Index Per Article: 20.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
21
Tocheva EI, Ortega DR, Jensen GJ. Sporulation, bacterial cell envelopes and the origin of life. Nat Rev Microbiol 2016;14:535-542. [PMID: 28232669 DOI: 10.1038/nrmicro.2016.85] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
22
Akanuma S, Yokobori SI, Nakajima Y, Bessho M, Yamagishi A. Robustness of predictions of extremely thermally stable proteins in ancient organisms. Evolution 2015;69:2954-62. [PMID: 26404857 DOI: 10.1111/evo.12779] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2015] [Revised: 09/08/2015] [Accepted: 09/10/2015] [Indexed: 01/06/2023]
23
Williams TA, Heaps SE, Cherlin S, Nye TMW, Boys RJ, Embley TM. New substitution models for rooting phylogenetic trees. Philos Trans R Soc Lond B Biol Sci 2015;370:20140336. [PMID: 26323766 PMCID: PMC4571574 DOI: 10.1098/rstb.2014.0336] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/04/2015] [Indexed: 12/23/2022]  Open
24
Genome Diversity of Spore-Forming Firmicutes. Microbiol Spectr 2015;1. [PMID: 26184964 DOI: 10.1128/microbiolspectrum.tbs-0015-2012] [Citation(s) in RCA: 101] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]  Open
25
Bevans CG, Krettler C, Reinhart C, Watzka M, Oldenburg J. Phylogeny of the Vitamin K 2,3-Epoxide Reductase (VKOR) Family and Evolutionary Relationship to the Disulfide Bond Formation Protein B (DsbB) Family. Nutrients 2015;7:6224-49. [PMID: 26230708 PMCID: PMC4555120 DOI: 10.3390/nu7085281] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Revised: 06/25/2015] [Accepted: 07/09/2015] [Indexed: 12/04/2022]  Open
26
Williams TA, Embley TM. Archaeal "dark matter" and the origin of eukaryotes. Genome Biol Evol 2014;6:474-81. [PMID: 24532674 PMCID: PMC3971582 DOI: 10.1093/gbe/evu031] [Citation(s) in RCA: 73] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
27
Cavalier-Smith T. The neomuran revolution and phagotrophic origin of eukaryotes and cilia in the light of intracellular coevolution and a revised tree of life. Cold Spring Harb Perspect Biol 2014;6:a016006. [PMID: 25183828 PMCID: PMC4142966 DOI: 10.1101/cshperspect.a016006] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
28
Kim KM, Nasir A, Hwang K, Caetano-Anollés G. A tree of cellular life inferred from a genomic census of molecular functions. J Mol Evol 2014;79:240-62. [PMID: 25128982 DOI: 10.1007/s00239-014-9637-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2014] [Accepted: 08/05/2014] [Indexed: 10/24/2022]
29
Lake JA, Sinsheimer JS. The deep roots of the rings of life. Genome Biol Evol 2014;5:2440-8. [PMID: 24281049 PMCID: PMC3879980 DOI: 10.1093/gbe/evt194] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
30
Caetano-Anollés G, Nasir A, Zhou K, Caetano-Anollés D, Mittenthal JE, Sun FJ, Kim KM. Archaea: the first domain of diversified life. ARCHAEA (VANCOUVER, B.C.) 2014;2014:590214. [PMID: 24987307 PMCID: PMC4060292 DOI: 10.1155/2014/590214] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2013] [Revised: 02/15/2014] [Accepted: 03/25/2014] [Indexed: 01/23/2023]
31
Williams TA, Foster PG, Cox CJ, Embley TM. An archaeal origin of eukaryotes supports only two primary domains of life. Nature 2014;504:231-6. [PMID: 24336283 DOI: 10.1038/nature12779] [Citation(s) in RCA: 316] [Impact Index Per Article: 31.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2013] [Accepted: 10/14/2013] [Indexed: 02/07/2023]
32
Close encounters of the third domain: the emerging genomic view of archaeal diversity and evolution. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL 2013;2013:202358. [PMID: 24348093 PMCID: PMC3852633 DOI: 10.1155/2013/202358] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2013] [Accepted: 09/21/2013] [Indexed: 01/06/2023]
33
Romance of the three domains: how cladistics transformed the classification of cellular organisms. Protein Cell 2013;4:664-76. [PMID: 23873078 PMCID: PMC4875529 DOI: 10.1007/s13238-013-3050-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2013] [Accepted: 07/01/2013] [Indexed: 11/23/2022]  Open
34
Marakushev SA, Belonogova OV. The divergence and natural selection of autocatalytic primordial metabolic systems. ORIGINS LIFE EVOL B 2013;43:263-81. [PMID: 23860777 DOI: 10.1007/s11084-013-9340-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Accepted: 06/28/2013] [Indexed: 11/24/2022]
35
Lasek-Nesselquist E, Gogarten JP. The effects of model choice and mitigating bias on the ribosomal tree of life. Mol Phylogenet Evol 2013;69:17-38. [PMID: 23707703 DOI: 10.1016/j.ympev.2013.05.006] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2013] [Revised: 04/26/2013] [Accepted: 05/08/2013] [Indexed: 01/03/2023]
36
Dey A, Adithi V, Chatterji D. Co-evolution of RNA polymerase with RbpA in the phylum Actinobacteria. Appl Transl Genom 2012;1:9-20. [PMID: 27896048 PMCID: PMC5121209 DOI: 10.1016/j.atg.2012.03.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2011] [Revised: 02/21/2012] [Accepted: 03/16/2012] [Indexed: 11/17/2022]
37
Budd A, Devos DP. Evaluating the Evolutionary Origins of Unexpected Character Distributions within the Bacterial Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum. Front Microbiol 2012;3:401. [PMID: 23189077 PMCID: PMC3505017 DOI: 10.3389/fmicb.2012.00401] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2012] [Accepted: 10/31/2012] [Indexed: 12/26/2022]  Open
38
Sinsheimer JS, Little RJA, Lake JA. Rooting gene trees without outgroups: EP rooting. Genome Biol Evol 2012;4:709-19. [PMID: 22593551 PMCID: PMC3509888 DOI: 10.1093/gbe/evs047] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
39
The falsifiability of the models for the origin of eukaryotes. Curr Genet 2011;57:367-90. [DOI: 10.1007/s00294-011-0357-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2011] [Revised: 09/29/2011] [Accepted: 09/30/2011] [Indexed: 01/13/2023]
40
Marakushev SA, Belonogova OV. Emergence of the chemoautotrophic metabolism in hydrothermal environments and the origin of ancestral bacterial taxa. DOKL BIOCHEM BIOPHYS 2011;439:161-6. [PMID: 21928135 DOI: 10.1134/s1607672911040041] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2011] [Indexed: 12/26/2022]
41
Rooting phylogenies using gene duplications: An empirical example from the bees (Apoidea). Mol Phylogenet Evol 2011;60:295-304. [DOI: 10.1016/j.ympev.2011.05.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2010] [Revised: 04/26/2011] [Accepted: 05/03/2011] [Indexed: 12/23/2022]
42
O'Malley MA, Koonin EV. How stands the Tree of Life a century and a half after The Origin? Biol Direct 2011;6:32. [PMID: 21714936 PMCID: PMC3158114 DOI: 10.1186/1745-6150-6-32] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2011] [Accepted: 06/30/2011] [Indexed: 12/21/2022]  Open
43
McDonald GD, Storrie-Lombardi MC. Biochemical constraints in a protobiotic earth devoid of basic amino acids: the "BAA(-) world". ASTROBIOLOGY 2010;10:989-1000. [PMID: 21162678 DOI: 10.1089/ast.2010.0484] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
44
Evolution of the Kdo2-lipid A biosynthesis in bacteria. BMC Evol Biol 2010;10:362. [PMID: 21106097 PMCID: PMC3087551 DOI: 10.1186/1471-2148-10-362] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2010] [Accepted: 11/24/2010] [Indexed: 11/21/2022]  Open
45
Fournier GP, Dick AA, Williams D, Gogarten JP. Evolution of the Archaea: emerging views on origins and phylogeny. Res Microbiol 2010;162:92-8. [PMID: 21034818 DOI: 10.1016/j.resmic.2010.09.016] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2010] [Accepted: 09/10/2010] [Indexed: 01/04/2023]
46
Sutcliffe IC. Cell envelope architecture in the Chloroflexi: a shifting frontline in a phylogenetic turf war. Environ Microbiol 2010;13:279-82. [PMID: 20860732 DOI: 10.1111/j.1462-2920.2010.02339.x] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Dagan T, Roettger M, Bryant D, Martin W. Genome networks root the tree of life between prokaryotic domains. Genome Biol Evol 2010;2:379-92. [PMID: 20624742 PMCID: PMC2997548 DOI: 10.1093/gbe/evq025] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
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Mathews S, Clements MD, Beilstein MA. A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants. Philos Trans R Soc Lond B Biol Sci 2010;365:383-95. [PMID: 20047866 PMCID: PMC2838261 DOI: 10.1098/rstb.2009.0233] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
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Cavalier-Smith T. Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution. Biol Direct 2010;5:7. [PMID: 20132544 PMCID: PMC2837639 DOI: 10.1186/1745-6150-5-7] [Citation(s) in RCA: 139] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2009] [Accepted: 02/04/2010] [Indexed: 12/18/2022]  Open
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Dagan T, Martin W. Getting a better picture of microbial evolution en route to a network of genomes. Philos Trans R Soc Lond B Biol Sci 2009;364:2187-96. [PMID: 19571239 DOI: 10.1098/rstb.2009.0040] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
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