• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4602591)   Today's Articles (72)   Subscriber (49368)
For: Costa IR, Prosdocimi F, Jennings WB. In silico phylogenomics using complete genomes: a case study on the evolution of hominoids. Genome Res 2016;26:1257-67. [PMID: 27435933 PMCID: PMC5052044 DOI: 10.1101/gr.203950.115] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2015] [Accepted: 07/14/2016] [Indexed: 01/30/2023]
Number Cited by Other Article(s)
1
Genome Evolution and the Future of Phylogenomics of Non-Avian Reptiles. Animals (Basel) 2023;13:ani13030471. [PMID: 36766360 PMCID: PMC9913427 DOI: 10.3390/ani13030471] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 01/13/2023] [Accepted: 01/15/2023] [Indexed: 02/01/2023]  Open
2
Schull JK, Turakhia Y, Hemker JA, Dally WJ, Bejerano G. OUP accepted manuscript. Genome Biol Evol 2022;14:6529394. [PMID: 35171243 PMCID: PMC8920512 DOI: 10.1093/gbe/evac013] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/10/2022] [Indexed: 11/14/2022]  Open
3
G Ribeiro P, Torres Jiménez MF, Andermann T, Antonelli A, Bacon CD, Matos-Maraví P. A bioinformatic platform to integrate target capture and whole genome sequences of various read depths for phylogenomics. Mol Ecol 2021;30:6021-6035. [PMID: 34674330 PMCID: PMC9298010 DOI: 10.1111/mec.16240] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 09/24/2021] [Accepted: 10/16/2021] [Indexed: 11/28/2022]
4
Forthman M, Braun EL, Kimball RT. Gene tree quality affects empirical coalescent branch length estimation. ZOOL SCR 2021. [DOI: 10.1111/zsc.12512] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
5
Adams RH, Castoe TA, DeGiorgio M. PhyloWGA: chromosome-aware phylogenetic interrogation of whole genome alignments. Bioinformatics 2021;37:1923-1925. [PMID: 33051672 DOI: 10.1093/bioinformatics/btaa884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 09/16/2020] [Accepted: 09/29/2020] [Indexed: 11/13/2022]  Open
6
Cloutier A, Sackton TB, Grayson P, Clamp M, Baker AJ, Edwards SV. Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone. Syst Biol 2020;68:937-955. [PMID: 31135914 PMCID: PMC6857515 DOI: 10.1093/sysbio/syz019] [Citation(s) in RCA: 59] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Revised: 03/06/2019] [Accepted: 04/09/2019] [Indexed: 01/17/2023]  Open
7
Sanderson MJ, Nicolae M, McMahon MM. Homology-Aware Phylogenomics at Gigabase Scales. Syst Biol 2018;66:590-603. [PMID: 28123115 PMCID: PMC5790135 DOI: 10.1093/sysbio/syw104] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2016] [Accepted: 11/25/2016] [Indexed: 11/13/2022]  Open
8
Edwards SV, Cloutier A, Baker AJ. Conserved Nonexonic Elements: A Novel Class of Marker for Phylogenomics. Syst Biol 2017;66:1028-1044. [PMID: 28637293 PMCID: PMC5790140 DOI: 10.1093/sysbio/syx058] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2016] [Revised: 06/03/2017] [Accepted: 06/06/2017] [Indexed: 01/12/2023]  Open
9
Jennings WB. On the independent gene trees assumption in phylogenomic studies. Mol Ecol 2017;26:4862-4871. [PMID: 28752599 DOI: 10.1111/mec.14274] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2016] [Revised: 07/13/2017] [Accepted: 07/24/2017] [Indexed: 11/28/2022]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA