Selectivity mechanism of magnesium and calcium in cation-binding pocket structures of phosphotyrosine

A theoretical study on hydrated sodium ion-phenylalanine clusters Na+(Phe)(H2O)n (n = 0-6; Phe = phenylalanine)

The cation-π interaction is of importance in many chemical and biological processes such as those involving protein geometries and functionals and ion channels. In this study, to understand the cation-π interaction between essential ions and protein in the water-aqueous environment, geometries, electronic structures, bonding properties, and dynamic stabilities of hydrated Na+-phenylalanine clusters Na+(Phe)(H2O)n (n = 0-6) were studied using density functional theory calculations and ab initio molecular dynamics simulations. After the addition of water molecules, Na+(Phe)(H2O)n structures change from a tridentate complex to quadridentate or pentadentate complexes while the cation-π interaction always exists. The fluctuation between quadridentate and pentadentate complexes results from the competition between cation-O bonding and hydrogen bonding. The charge analysis reveals that the positive charge is mainly located on the Na ion, whereas the further addition of water reduces the binding energy of water, electron affinity, and ionization potential. As the number of water molecules increases, the bonding interactions between the sodium ion and the remaining phenylalanine-water complex increase and correlate with the coordination number, in which the electrostatic interaction contributes more than the orbital interaction. The important orbital interaction terms come from the donation of the carboxyl and amino groups and water to the Na+ ion. Molecular dynamic simulations revealed that Na+(Phe)(H2O)6 is stable at 300 K.

Enhancement of the Water Affinity of Histidine by Zinc and Copper Ions

Histidine (His) is widely involved in the structure and function of biomolecules. Transition-metal ions, such as Zn²⁺ and Cu²⁺, widely exist in biological environments, and they are crucial to many life-sustaining physiological processes. Herein, by employing density function calculations, we theoretically show that the water affinity of His can be enhanced by the strong cation–π interaction between His and Zn²⁺ and Cu²⁺. Further, the solubility of His is experimentally demonstrated to be greatly enhanced in ZnCl₂ and CuCl₂ solutions. The existence of cation–π interaction is demonstrated by fluorescence, ultraviolet (UV) spectroscopy and nuclear magnetic resonance (NMR) experiments. These findings are of great importance for the bioavailability of aromatic drugs and provide new insight for understanding the physiological functions of transition metal ions.