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Zhang Y, Feng W. Impact of the coronavirus disease 2019 pandemic on the diversity of notifiable infectious diseases: a case study in Shanghai, China. PeerJ 2024; 12:e17124. [PMID: 38495754 PMCID: PMC10941765 DOI: 10.7717/peerj.17124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 02/26/2024] [Indexed: 03/19/2024] Open
Abstract
The outbreak of coronavirus disease 2019 (COVID-19) has not only posed significant challenges to public health but has also impacted every aspect of society and the environment. In this study, we propose an index of notifiable disease outbreaks (NDOI) to assess the impact of COVID-19 on other notifiable diseases in Shanghai, China. Additionally, we identify the critical factors influencing these diseases using multivariate statistical analysis. We collected monthly data on 34 notifiable infectious diseases (NIDs) and corresponding environmental and socioeconomic factors (17 indicators) from January 2017 to December 2020. The results revealed that the total number of cases and NDOI of all notifiable diseases decreased by 47.1% and 52.6%, respectively, compared to the period before the COVID-19 pandemic. Moreover, the COVID-19 pandemic has led to improved air quality as well as impacted the social economy and human life. Redundancy analysis (RDA) showed that population mobility, particulate matter (PM2.5), atmospheric pressure, and temperature were the primary factors influencing the spread of notifiable diseases. The NDOI is beneficial in establishing an early warning system for infectious disease epidemics at different scales. Furthermore, our findings also provide insight into the response mechanisms of notifiable diseases influenced by social and environmental factors.
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Affiliation(s)
- Yongfang Zhang
- School of Chemistry and Chemical Engineering, Zhoukou Normal University, Zhoukou, China
| | - Wenli Feng
- School of Chemistry and Chemical Engineering, Zhoukou Normal University, Zhoukou, China
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Li CY, Yin J, Chen L. Impact of social distancing on disease transmission risk in the context of a pandemic. Phys Rev E 2023; 108:054115. [PMID: 38115525 DOI: 10.1103/physreve.108.054115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Accepted: 10/12/2023] [Indexed: 12/21/2023]
Abstract
Changes in pedestrian dynamics caused by social distancing policies place new demands on pedestrian motion modeling during the pandemic. This study summarizes pedestrian movement characteristics during the pandemic, based on which, the traditional floor-field cellular automata model was improved by introducing two floor fields related to pedestrian density to simulate social distancing in crowded places. Especially, the cumulative density field guides pedestrians in route selection, thereby compensating for the limitation of the previous models in which only local repulsion was considered. By selecting an appropriate combination of parameters, the desired social distancing behavior can be observed. Then, the rationality of our model is verified by the fundamental diagram. Moreover, to assess the influences of social distancing on the risk of disease transmission, we considered both person-person transmission and environment-person transmission. The simulation results show that although social distancing is effective in preventing interpersonal transmission, an increase in environmental transmission may somewhat offset this effect. We also examined the influence of individual motion heterogeneity on infection spread and found that the containment was the best when only patients complied with the social distancing restriction. The trade-off between safety and efficiency associated with social distancing was also initially explored in this study.
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Affiliation(s)
- Chuan-Yao Li
- School of Traffic and Transportation Engineering, Central South University, Changsha 410075, China
| | - Jie Yin
- School of Traffic and Transportation Engineering, Central South University, Changsha 410075, China
| | - Liang Chen
- Beijing Key Laboratory of Traffic Engineering, Beijing University of Technology, Beijing 100124, China
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Zhu Y, Shen R, Dong H, Wang W. Spatial heterogeneity and infection patterns on epidemic transmission disclosed by a combined contact-dependent dynamics and compartmental model. PLoS One 2023; 18:e0286558. [PMID: 37310972 DOI: 10.1371/journal.pone.0286558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Accepted: 05/18/2023] [Indexed: 06/15/2023] Open
Abstract
Epidemics, such as COVID-19, have caused significant harm to human society worldwide. A better understanding of epidemic transmission dynamics can contribute to more efficient prevention and control measures. Compartmental models, which assume homogeneous mixing of the population, have been widely used in the study of epidemic transmission dynamics, while agent-based models rely on a network definition for individuals. In this study, we developed a real-scale contact-dependent dynamic (CDD) model and combined it with the traditional susceptible-exposed-infectious-recovered (SEIR) compartment model. By considering individual random movement and disease spread, our simulations using the CDD-SEIR model reveal that the distribution of agent types in the community exhibits spatial heterogeneity. The estimated basic reproduction number R0 depends on group mobility, increasing logarithmically in strongly heterogeneous cases and saturating in weakly heterogeneous conditions. Notably, R0 is approximately independent of virus virulence when group mobility is low. We also show that transmission through small amounts of long-term contact is possible due to short-term contact patterns. The dependence of R0 on environment and individual movement patterns implies that reduced contact time and vaccination policies can significantly reduce the virus transmission capacity in situations where the virus is highly transmissible (i.e., R0 is relatively large). This work provides new insights into how individual movement patterns affect virus spreading and how to protect people more efficiently.
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Affiliation(s)
- Youyuan Zhu
- Kuang Yaming Honors School, Nanjing University, Nanjing, China
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Nanjing, China
- Department of Physics, Nanjing University, Nanjing, China
| | - Ruizhe Shen
- Kuang Yaming Honors School, Nanjing University, Nanjing, China
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Nanjing, China
- Department of Physics, Nanjing University, Nanjing, China
| | - Hao Dong
- Kuang Yaming Honors School, Nanjing University, Nanjing, China
- Department of Physics, Nanjing University, Nanjing, China
- State Key Laboratory of Analytical Chemistry for Life Science, Nanjing University, Nanjing, China
| | - Wei Wang
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Nanjing, China
- Department of Physics, Nanjing University, Nanjing, China
- Institute for Brain Sciences, Nanjing University, Nanjing, China
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Benson J, Bessonov M, Burke K, Cassani S, Ciocanel MV, Cooney DB, Volkening A. How do classroom-turnover times depend on lecture-hall size? MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:9179-9207. [PMID: 37161239 DOI: 10.3934/mbe.2023403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Academic spaces in colleges and universities span classrooms for 10 students to lecture halls that hold over 600 people. During the break between consecutive classes, students from the first class must leave and the new class must find their desks, regardless of whether the room holds 10 or 600 people. Here we address the question of how the size of large lecture halls affects classroom-turnover times, focusing on non-emergency settings. By adapting the established social-force model, we treat students as individuals who interact and move through classrooms to reach their destinations. We find that social interactions and the separation time between consecutive classes strongly influence how long it takes entering students to reach their desks, and that these effects are more pronounced in larger lecture halls. While the median time that individual students must travel increases with decreased separation time, we find that shorter separation times lead to shorter classroom-turnover times overall. This suggests that the effects of scheduling gaps and lecture-hall size on classroom dynamics depends on the perspective-individual student or whole class-that one chooses to take.
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Affiliation(s)
- Joseph Benson
- Mathematics, Statistics, and Computer Science, Macalester College, Saint Paul, MN 55105, USA
| | - Mariya Bessonov
- Department of Mathematics, NYC College of Technology, Brooklyn, NY 11201
| | - Korana Burke
- Department of Mathematics, University of California Davis, Davis, CA 95616
| | - Simone Cassani
- Department of Mathematics, University at Buffalo, Buffalo, NY 14260
| | | | - Daniel B Cooney
- Department of Mathematics and Center for Mathematical Biology, University of Pennsylvania, Philadelphia, PA 19104
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Cui H, Xie J, Zhu M, Tian X, Wan C. Virus transmission risk of college students in railway station during Post-COVID-19 era: Combining the social force model and the virus transmission model. PHYSICA A 2022; 608:128284. [PMID: 36340745 PMCID: PMC9624064 DOI: 10.1016/j.physa.2022.128284] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Revised: 09/28/2022] [Indexed: 06/16/2023]
Abstract
In the post-epidemic era, people's lives are gradually returning to normal, and travel is gradually resuming. The safe evacuation of cross-regional travelers in railway station has also attracted more and more attention, especially the evacuation behavior of college students in railway station. In this paper, considering the pedestrian dynamics mechanism in the emergency evacuation process during the COVID-19 normalized epidemic prevention and control, an Agent-based social force model was established to simulate the activities of college students in railway station. Combined with the virus infection transmission model, Monte Carlo simulation was used to calculate the total exposure time and the number of high-risk exposed people in the railway station evacuation process. In addition, sensitivity analysis was conducted on the total exposure time and the number of high-risk exposed people under 180 combinations of the number of initial infections, social distance, and the proportion of people wearing masks incorrectly. The results show that with the increase of social distances, the total exposure time and the number of high-risk exposures do not always decrease, but increase in some cases. The presence or absence of obstacles in the evacuation scene has no significant difference in the effects on total exposure time and the number of high-risk exposures. During the evacuation behavior of college students in railway station, choosing the appropriate number of lines can effectively reduce the total exposure time and the number of high-risk exposures. Finally, some policy suggestions are proposed to reduce the risk of virus transmission in the railway station evacuation process, such as choosing dynamic and reasonable social distance and the number of queues, and reducing obstacles.
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Affiliation(s)
- Hongjun Cui
- School of Civil and Transportation, Hebei University of Technology, Xiping Road 5340, Tianjin, China
| | - Jinping Xie
- School of Civil and Transportation, Hebei University of Technology, Xiping Road 5340, Tianjin, China
| | - Minqing Zhu
- School of Architecture and Art Design, Hebei University of Technology, Xiping Road 5340, Tianjin, China
| | - Xiaoyong Tian
- School of Architecture and Art Design, Hebei University of Technology, Xiping Road 5340, Tianjin, China
| | - Ce Wan
- School of Architecture and Art Design, Hebei University of Technology, Xiping Road 5340, Tianjin, China
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Hiraoka T, Rizi AK, Kivelä M, Saramäki J. Herd immunity and epidemic size in networks with vaccination homophily. Phys Rev E 2022; 105:L052301. [PMID: 35706197 DOI: 10.1103/physreve.105.l052301] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 04/26/2022] [Indexed: 06/15/2023]
Abstract
We study how the herd immunity threshold and the expected epidemic size depend on homophily with respect to vaccine adoption. We find that the presence of homophily considerably increases the critical vaccine coverage needed for herd immunity and that strong homophily can push the threshold entirely out of reach. The epidemic size monotonically increases as a function of homophily strength for a perfect vaccine, while it is maximized at a nontrivial level of homophily when the vaccine efficacy is limited. Our results highlight the importance of vaccination homophily in epidemic modeling.
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Affiliation(s)
- Takayuki Hiraoka
- Department of Computer Science, Aalto University, 00076 Espoo, Finland
| | - Abbas K Rizi
- Department of Computer Science, Aalto University, 00076 Espoo, Finland
| | - Mikko Kivelä
- Department of Computer Science, Aalto University, 00076 Espoo, Finland
| | - Jari Saramäki
- Department of Computer Science, Aalto University, 00076 Espoo, Finland
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